RNA–Protein interactions for RNA: ENST00000509769.5

USP53-205, Transcript of ubiquitin specific peptidase 53, humanhuman

TSL 1 (best)

Gene USP53, Length 4,803 nt, Biotype nonsense mediated decay, Subcellular localisation Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP53-205ENST00000509769 INTS9Q9NV88 658 aaKnown RBP3.87□□□□□ -1.79
USP53-205ENST00000509769 PKD2L2Q9NZM6 624 aa3.87□□□□□ -1.79
USP53-205ENST00000509769 CEP126Q9P2H0 1117 aa3.87□□□□□ -1.79
USP53-205ENST00000509769 ZNF229Q9UJW7 825 aa3.87□□□□□ -1.79
USP53-205ENST00000509769 CDC23Q9UJX2 597 aa3.87□□□□□ -1.79
USP53-205ENST00000509769 TMEM131LA2VDJ0 1609 aa3.87□□□□□ -1.79
USP53-205ENST00000509769 TULP4Q9NRJ4 1543 aa3.87□□□□□ -1.79
USP53-205ENST00000509769 MINK1Q8N4C8 1332 aaPredicted RBP3.87□□□□□ -1.79
USP53-205ENST00000509769 PNMA8CA0A1B0GUJ8 204 aa3.87□□□□□ -1.79
USP53-205ENST00000509769 IQCJ-SCHIP1C9J366 451 aaPredicted RBP3.87□□□□□ -1.79
USP53-205ENST00000509769 P4HA2O15460 535 aa3.87□□□□□ -1.79
USP53-205ENST00000509769 STX10O60499 249 aa3.87□□□□□ -1.79
USP53-205ENST00000509769 COBLO75128 1261 aa3.87□□□□□ -1.79
USP53-205ENST00000509769 PARNO95453 639 aaKnown RBP3.87□□□□□ -1.79
USP53-205ENST00000509769 TBC1D8O95759 1140 aa3.87□□□□□ -1.79
USP53-205ENST00000509769 BAG2O95816 211 aa3.87□□□□□ -1.79
USP53-205ENST00000509769 MX2P20592 715 aa3.87□□□□□ -1.79
USP53-205ENST00000509769 CYP2C19P33261 490 aa3.87□□□□□ -1.79
USP53-205ENST00000509769 NUP62P37198 522 aaPredicted RBP3.87□□□□□ -1.79
USP53-205ENST00000509769 EVA1CP58658 441 aa3.87□□□□□ -1.79
USP53-205ENST00000509769 MDM2Q00987 491 aaPredicted RBP3.87□□□□□ -1.79
USP53-205ENST00000509769 CAV1Q03135 178 aa3.87□□□□□ -1.79
USP53-205ENST00000509769 SEMA3FQ13275 785 aa3.87□□□□□ -1.79
USP53-205ENST00000509769 LONRF3Q496Y0 759 aa3.87□□□□□ -1.79
USP53-205ENST00000509769 FAM133BQ5BKY9 247 aaKnown RBP3.87□□□□□ -1.79
USP53-205ENST00000509769 DDI2Q5TDH0 399 aa3.87□□□□□ -1.79
USP53-205ENST00000509769 NEK10Q6ZWH5 1172 aa3.87□□□□□ -1.79
USP53-205ENST00000509769 SND1Q7KZF4 910 aaKnown RBP eCLIP3.87□□□□□ -1.79
USP53-205ENST00000509769 GSTA5Q7RTV2 222 aa3.87□□□□□ -1.79
USP53-205ENST00000509769 NANOGNBQ7Z5D8 188 aa3.87□□□□□ -1.79
USP53-205ENST00000509769 USP48Q86UV5 1035 aa3.87□□□□□ -1.79
USP53-205ENST00000509769 MINDY2Q8NBR6 621 aa3.87□□□□□ -1.79
USP53-205ENST00000509769 B4GALNT2Q8NHY0 566 aa3.87□□□□□ -1.79
USP53-205ENST00000509769 WDR60Q8WVS4 1066 aa3.87□□□□□ -1.79
USP53-205ENST00000509769 DDX17Q92841 729 aaKnown RBP3.87□□□□□ -1.79
USP53-205ENST00000509769 RFT1Q96AA3 541 aa3.87□□□□□ -1.79
USP53-205ENST00000509769 NR1H4Q96RI1 486 aaPredicted RBP3.87□□□□□ -1.79
USP53-205ENST00000509769 CARD10Q9BWT7 1032 aa3.87□□□□□ -1.79
USP53-205ENST00000509769 CARD6Q9BX69 1037 aa3.87□□□□□ -1.79
USP53-205ENST00000509769 FAM204AQ9H8W3 233 aa3.87□□□□□ -1.79
USP53-205ENST00000509769 COG4Q9H9E3 785 aa3.87□□□□□ -1.79
USP53-205ENST00000509769 EHD2Q9NZN4 543 aa3.87□□□□□ -1.79
USP53-205ENST00000509769 UBA2Q9UBT2 640 aaPredicted RBP3.87□□□□□ -1.79
USP53-205ENST00000509769 ADGRA3Q8IWK6 1321 aa3.87□□□□□ -1.79
USP53-205ENST00000509769 SBNO1A3KN83 1393 aa3.87□□□□□ -1.79
USP53-205ENST00000509769 CRTAPO75718 401 aaPredicted RBP3.87□□□□□ -1.79
USP53-205ENST00000509769 ROR2Q01974 943 aaKnown RBP3.87□□□□□ -1.79
USP53-205ENST00000509769 EIF2B5Q13144 721 aaKnown RBP3.87□□□□□ -1.79
USP53-205ENST00000509769 MFSD4BQ5TF39 518 aa3.87□□□□□ -1.79
USP53-205ENST00000509769 LIN9Q5TKA1 542 aa3.87□□□□□ -1.79
USP53-205ENST00000509769 NFRKBQ6P4R8 1299 aa3.87□□□□□ -1.79
USP53-205ENST00000509769 ANGPTL8Q6UXH0 198 aa3.87□□□□□ -1.79
USP53-205ENST00000509769 KRT74Q7RTS7 529 aa3.87□□□□□ -1.79
USP53-205ENST00000509769 PATL1Q86TB9 770 aaKnown RBP3.87□□□□□ -1.79
USP53-205ENST00000509769 FLCNQ8NFG4 579 aa3.87□□□□□ -1.79
USP53-205ENST00000509769 ATL2Q8NHH9 583 aa3.87□□□□□ -1.79
USP53-205ENST00000509769 EVI5LQ96CN4 794 aa3.87□□□□□ -1.79
USP53-205ENST00000509769 TRIM47Q96LD4 638 aa3.87□□□□□ -1.79
USP53-205ENST00000509769 CRNKL1Q9BZJ0 848 aaKnown RBP3.87□□□□□ -1.79
USP53-205ENST00000509769 TRIM31Q9BZY9 425 aa3.87□□□□□ -1.79
USP53-205ENST00000509769 SLC24A3Q9HC58 644 aa3.87□□□□□ -1.79
USP53-205ENST00000509769 CCDC87Q9NVE4 849 aa3.87□□□□□ -1.79
USP53-205ENST00000509769 AATFQ9NY61 560 aaKnown RBP eCLIP3.87□□□□□ -1.79
USP53-205ENST00000509769 RPL26L1Q9UNX3 145 aaKnown RBP3.87□□□□□ -1.79
USP53-205ENST00000509769 SLC12A7Q9Y666 1083 aa3.87□□□□□ -1.79
USP53-205ENST00000509769 RGPD3A6NKT7 1758 aaPredicted RBP3.87□□□□□ -1.79
USP53-205ENST00000509769 RGPD4Q7Z3J3 1758 aa3.87□□□□□ -1.79
USP53-205ENST00000509769 CHD2O14647 1828 aaKnown RBP3.87□□□□□ -1.79
USP53-205ENST00000509769 C1orf167Q5SNV9 1468 aa3.87□□□□□ -1.79
USP53-205ENST00000509769 TET3O43151 1660 aa3.87□□□□□ -1.79
USP53-205ENST00000509769 A8MXQ7 604 aa3.87□□□□□ -1.79
USP53-205ENST00000509769 MEIS1O00470 390 aa3.87□□□□□ -1.79
USP53-205ENST00000509769 TADA3O75528 432 aa3.87□□□□□ -1.79
USP53-205ENST00000509769 KRT38O76015 456 aa3.87□□□□□ -1.79
USP53-205ENST00000509769 F13A1P00488 732 aa3.87□□□□□ -1.79
USP53-205ENST00000509769 PARP1P09874 1014 aaKnown RBP3.87□□□□□ -1.79
USP53-205ENST00000509769 ESRRAP11474 423 aaPredicted RBP3.87□□□□□ -1.79
USP53-205ENST00000509769 IFNA8P32881 189 aa3.87□□□□□ -1.79
USP53-205ENST00000509769 CA8P35219 290 aa3.87□□□□□ -1.79
USP53-205ENST00000509769 IGBP1P78318 339 aa3.87□□□□□ -1.79
USP53-205ENST00000509769 MYBPC2Q14324 1141 aa3.87□□□□□ -1.79
USP53-205ENST00000509769 TRIM71Q2Q1W2 868 aaKnown RBP3.87□□□□□ -1.79
USP53-205ENST00000509769 ATF7IPQ6VMQ6 1270 aa3.87□□□□□ -1.79
USP53-205ENST00000509769 TOGARAM2Q6ZUX3 1019 aa3.87□□□□□ -1.79
USP53-205ENST00000509769 MYLK4Q86YV6 388 aaPredicted RBP3.87□□□□□ -1.79
USP53-205ENST00000509769 LRRC49Q8IUZ0 686 aa3.87□□□□□ -1.79
USP53-205ENST00000509769 SAMD3Q8N6K7 520 aa3.87□□□□□ -1.79
USP53-205ENST00000509769 BEST2Q8NFU1 509 aa3.87□□□□□ -1.79
USP53-205ENST00000509769 ENKURQ8TC29 256 aa3.87□□□□□ -1.79
USP53-205ENST00000509769 DPF3Q92784 378 aa3.87□□□□□ -1.79
USP53-205ENST00000509769 MCRS1Q96EZ8 462 aa3.87□□□□□ -1.79
USP53-205ENST00000509769 LLPHQ9BRT6 129 aaKnown RBP3.87□□□□□ -1.79
USP53-205ENST00000509769 FBXO28Q9NVF7 368 aa3.87□□□□□ -1.79
USP53-205ENST00000509769 PKD2L1Q9P0L9 805 aa3.87□□□□□ -1.79
USP53-205ENST00000509769 SENP1Q9P0U3 644 aa3.87□□□□□ -1.79
USP53-205ENST00000509769 TRMT6Q9UJA5 497 aaKnown RBP3.87□□□□□ -1.79
USP53-205ENST00000509769 NSD3Q9BZ95 1437 aa3.87□□□□□ -1.79
USP53-205ENST00000509769 ZNF644Q9H582 1327 aaPredicted RBP3.87□□□□□ -1.79
USP53-205ENST00000509769 CROCC2H7BZ55 1655 aa3.86□□□□□ -1.79
USP53-205ENST00000509769 ZFP91-CNTFA0A0A6YYC7 529 aaPredicted RBP3.86□□□□□ -1.79
Retrieved 100 of 20,778 RNA–protein pairs in 21.4 ms