RNA–Protein interactions for RNA: ENST00000507257.5

NUP54-205, Transcript of nucleoporin 54, humanhuman

TSL 5

Gene NUP54, Length 1,938 nt, Biotype nonsense mediated decay, Subcellular localisation Cytoplasm, Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
NUP54-205ENST00000507257 PLAAQ9Y263 795 aa19.57■□□□□ 0.72
NUP54-205ENST00000507257 BCL9O00512 1426 aa19.56■□□□□ 0.72
NUP54-205ENST00000507257 GMNCA6NCL1 334 aa19.56■□□□□ 0.72
NUP54-205ENST00000507257 H0YGN5 161 aa19.56■□□□□ 0.72
NUP54-205ENST00000507257 GCOM1H8Y6P7 765 aaPredicted RBP19.56■□□□□ 0.72
NUP54-205ENST00000507257 STXBP3O00186 592 aa19.56■□□□□ 0.72
NUP54-205ENST00000507257 MYZAPP0CAP1 466 aa19.56■□□□□ 0.72
NUP54-205ENST00000507257 PSMD2Q13200 908 aa19.56■□□□□ 0.72
NUP54-205ENST00000507257 LACTB2Q53H82 288 aaPredicted RBP19.56■□□□□ 0.72
NUP54-205ENST00000507257 CACNA2D4Q7Z3S7 1137 aa19.56■□□□□ 0.72
NUP54-205ENST00000507257 EEF2KMTQ96G04 330 aa19.56■□□□□ 0.72
NUP54-205ENST00000507257 CALML4Q96GE6 196 aa19.56■□□□□ 0.72
NUP54-205ENST00000507257 SLC4A9Q96Q91 983 aa19.56■□□□□ 0.72
NUP54-205ENST00000507257 KRT12Q99456 494 aa19.56■□□□□ 0.72
NUP54-205ENST00000507257 PLIN2Q99541 437 aa19.56■□□□□ 0.72
NUP54-205ENST00000507257 LZTS2Q9BRK4 669 aa19.56■□□□□ 0.72
NUP54-205ENST00000507257 CRNKL1Q9BZJ0 848 aaKnown RBP19.56■□□□□ 0.72
NUP54-205ENST00000507257 SLC40A1Q9NP59 571 aa19.56■□□□□ 0.72
NUP54-205ENST00000507257 DCP1AQ9NPI6 582 aaPredicted RBP19.56■□□□□ 0.72
NUP54-205ENST00000507257 CEP83Q9Y592 693 aa19.56■□□□□ 0.72
NUP54-205ENST00000507257 NFS1Q9Y697 457 aa19.56■□□□□ 0.72
NUP54-205ENST00000507257 TRAPPC3O43617 180 aa19.55■□□□□ 0.72
NUP54-205ENST00000507257 BUB1O43683 1085 aa19.55■□□□□ 0.72
NUP54-205ENST00000507257 PALMO75781 387 aa19.55■□□□□ 0.72
NUP54-205ENST00000507257 SEC24CP53992 1094 aa19.55■□□□□ 0.72
NUP54-205ENST00000507257 IFT88Q13099 833 aa19.55■□□□□ 0.72
NUP54-205ENST00000507257 CEP85LQ5SZL2 805 aa19.55■□□□□ 0.72
NUP54-205ENST00000507257 CCDC121Q6ZUS5 278 aa19.55■□□□□ 0.72
NUP54-205ENST00000507257 SV2BQ7L1I2 683 aa19.55■□□□□ 0.72
NUP54-205ENST00000507257 ZNF384Q8TF68 577 aa19.55■□□□□ 0.72
NUP54-205ENST00000507257 CALR3Q96L12 384 aaKnown RBP19.55■□□□□ 0.72
NUP54-205ENST00000507257 ZMYND12Q9H0C1 365 aa19.55■□□□□ 0.72
NUP54-205ENST00000507257 ATP8B3O60423 1300 aa19.55■□□□□ 0.72
NUP54-205ENST00000507257 ZSCAN5CA6NGD5 496 aaPredicted RBP19.55■□□□□ 0.72
NUP54-205ENST00000507257 E7EVH7 732 aa19.55■□□□□ 0.72
NUP54-205ENST00000507257 CDR1P51861 262 aa19.55■□□□□ 0.72
NUP54-205ENST00000507257 C10orf76Q5T2E6 689 aa19.55■□□□□ 0.72
NUP54-205ENST00000507257 RNF187Q5TA31 235 aaPredicted RBP19.55■□□□□ 0.72
NUP54-205ENST00000507257 MMTAG2Q9BU76 263 aaKnown RBP19.55■□□□□ 0.72
NUP54-205ENST00000507257 ATP6V0A2Q9Y487 856 aa19.55■□□□□ 0.72
NUP54-205ENST00000507257 ESYT3A0FGR9 886 aa19.54■□□□□ 0.72
NUP54-205ENST00000507257 TSPY2A6NKD2 308 aa19.54■□□□□ 0.72
NUP54-205ENST00000507257 RAD51CO43502 376 aa19.54■□□□□ 0.72
NUP54-205ENST00000507257 ECHS1P30084 290 aa19.54■□□□□ 0.72
NUP54-205ENST00000507257 GUCY2FP51841 1108 aa19.54■□□□□ 0.72
NUP54-205ENST00000507257 IFFO1Q0D2I5 559 aa19.54■□□□□ 0.72
NUP54-205ENST00000507257 KCNMA1Q12791 1236 aa19.54■□□□□ 0.72
NUP54-205ENST00000507257 MTMR3Q13615 1198 aa19.54■□□□□ 0.72
NUP54-205ENST00000507257 SLC18A3Q16572 532 aa19.54■□□□□ 0.72
NUP54-205ENST00000507257 FAM47AQ5JRC9 791 aa19.54■□□□□ 0.72
NUP54-205ENST00000507257 SFMBT2Q5VUG0 894 aa19.54■□□□□ 0.72
NUP54-205ENST00000507257 ANKRD13CQ8N6S4 541 aa19.54■□□□□ 0.72
NUP54-205ENST00000507257 PNMA1Q8ND90 353 aa19.54■□□□□ 0.72
NUP54-205ENST00000507257 GIMAP7Q8NHV1 300 aa19.54■□□□□ 0.72
NUP54-205ENST00000507257 SCFD2Q8WU76 684 aa19.54■□□□□ 0.72
NUP54-205ENST00000507257 PBKQ96KB5 322 aa19.54■□□□□ 0.72
NUP54-205ENST00000507257 LRRC27Q9C0I9 530 aa19.54■□□□□ 0.72
NUP54-205ENST00000507257 ABCA3Q99758 1704 aa19.54■□□□□ 0.72
NUP54-205ENST00000507257 ADAMTS2O95450 1211 aa19.53■□□□□ 0.72
NUP54-205ENST00000507257 HSD17B3P37058 310 aa19.53■□□□□ 0.72
NUP54-205ENST00000507257 EHHADHQ08426 723 aa19.53■□□□□ 0.72
NUP54-205ENST00000507257 TDRD12Q587J7 1177 aaKnown RBP19.53■□□□□ 0.72
NUP54-205ENST00000507257 MAATS1Q7Z4T9 603 aa19.53■□□□□ 0.72
NUP54-205ENST00000507257 ACTRT1Q8TDG2 376 aa19.53■□□□□ 0.72
NUP54-205ENST00000507257 TSG101Q99816 390 aa19.53■□□□□ 0.72
NUP54-205ENST00000507257 MAD2L2Q9UI95 211 aa19.53■□□□□ 0.72
NUP54-205ENST00000507257 CCDC88AQ3V6T2 1871 aa19.53■□□□□ 0.72
NUP54-205ENST00000507257 GHRP10912 638 aa19.53■□□□□ 0.72
NUP54-205ENST00000507257 SPDYCQ5MJ68 293 aa19.53■□□□□ 0.72
NUP54-205ENST00000507257 NSUN4Q96CB9 384 aaKnown RBP19.53■□□□□ 0.72
NUP54-205ENST00000507257 SGSM3Q96HU1 749 aa19.53■□□□□ 0.72
NUP54-205ENST00000507257 SLC39A2Q9NP94 309 aa19.53■□□□□ 0.72
NUP54-205ENST00000507257 DDX20Q9UHI6 824 aaKnown RBP19.53■□□□□ 0.72
NUP54-205ENST00000507257 TLR2O60603 784 aa19.52■□□□□ 0.72
NUP54-205ENST00000507257 KLRC1P26715 233 aa19.52■□□□□ 0.72
NUP54-205ENST00000507257 MARSP56192 900 aaKnown RBP19.52■□□□□ 0.72
NUP54-205ENST00000507257 NONOQ15233 471 aaKnown RBP eCLIP19.52■□□□□ 0.72
NUP54-205ENST00000507257 SNCBQ16143 134 aa19.52■□□□□ 0.72
NUP54-205ENST00000507257 STAG2Q8N3U4 1231 aa19.52■□□□□ 0.72
NUP54-205ENST00000507257 CCDC114Q96M63 670 aa19.52■□□□□ 0.72
NUP54-205ENST00000507257 CD248Q9HCU0 757 aa19.52■□□□□ 0.72
NUP54-205ENST00000507257 BLOC1S4Q9NUP1 217 aa19.52■□□□□ 0.72
NUP54-205ENST00000507257 AIPL1Q9NZN9 384 aa19.52■□□□□ 0.72
NUP54-205ENST00000507257 NOL4O94818 638 aa19.51■□□□□ 0.71
NUP54-205ENST00000507257 ELF1P32519 619 aa19.51■□□□□ 0.71
NUP54-205ENST00000507257 MRPL12P52815 198 aaKnown RBP19.51■□□□□ 0.71
NUP54-205ENST00000507257 XRCC4Q13426 336 aa19.51■□□□□ 0.71
NUP54-205ENST00000507257 ZCWPW2Q504Y3 356 aa19.51■□□□□ 0.71
NUP54-205ENST00000507257 CAVIN4Q5BKX8 364 aa19.51■□□□□ 0.71
NUP54-205ENST00000507257 ANKRD20A8PQ5CZ79 823 aa19.51■□□□□ 0.71
NUP54-205ENST00000507257 FAM83BQ5T0W9 1011 aa19.51■□□□□ 0.71
NUP54-205ENST00000507257 NEK8Q86SG6 692 aa19.51■□□□□ 0.71
NUP54-205ENST00000507257 FUKQ8N0W3 1084 aa19.51■□□□□ 0.71
NUP54-205ENST00000507257 KIF13BQ9NQT8 1826 aa19.51■□□□□ 0.71
NUP54-205ENST00000507257 ROBO3Q96MS0 1386 aa19.51■□□□□ 0.71
NUP54-205ENST00000507257 CCDC188H7C350 402 aa19.51■□□□□ 0.71
NUP54-205ENST00000507257 GNA14O95837 355 aa19.51■□□□□ 0.71
NUP54-205ENST00000507257 FXR2P51116 673 aaKnown RBP eCLIP19.51■□□□□ 0.71
NUP54-205ENST00000507257 ERVK-9P63128 1117 aa19.51■□□□□ 0.71
NUP54-205ENST00000507257 ZNF844Q08AG5 666 aa19.51■□□□□ 0.71
Retrieved 100 of 20,778 RNA–protein pairs in 34.9 ms