RNA–Protein interactions for RNA: ENST00000503945.2

MED28-203, Transcript of mediator complex subunit 28, humanhuman

TSL 1 (best)

Gene MED28, Length 879 nt, Biotype nonsense mediated decay, Subcellular localisation Endoplasmic reticulum, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
MED28-203ENST00000503945 C7orf31Q8N865 590 aa13.8□□□□□ -0.2
MED28-203ENST00000503945 FANCBQ8NB91 859 aa13.8□□□□□ -0.2
MED28-203ENST00000503945 SMARCC2Q8TAQ2 1214 aa13.8□□□□□ -0.2
MED28-203ENST00000503945 NEK1Q96PY6 1258 aa13.8□□□□□ -0.2
MED28-203ENST00000503945 SPZ1Q9BXG8 430 aa13.8□□□□□ -0.2
MED28-203ENST00000503945 MLXIPQ9HAP2 919 aa13.8□□□□□ -0.2
MED28-203ENST00000503945 CHD7Q9P2D1 2997 aa13.79□□□□□ -0.2
MED28-203ENST00000503945 ZBBXA8MT70 800 aa13.79□□□□□ -0.2
MED28-203ENST00000503945 SH2B2O14492 632 aaPredicted RBP13.79□□□□□ -0.2
MED28-203ENST00000503945 STAM2O75886 525 aa13.79□□□□□ -0.2
MED28-203ENST00000503945 PFKMP08237 780 aa13.79□□□□□ -0.2
MED28-203ENST00000503945 COL9A1P20849 921 aa13.79□□□□□ -0.2
MED28-203ENST00000503945 GNPTABQ3T906 1256 aa13.79□□□□□ -0.2
MED28-203ENST00000503945 CELF3Q5SZQ8 465 aaKnown RBP13.79□□□□□ -0.2
MED28-203ENST00000503945 MYSM1Q5VVJ2 828 aa13.79□□□□□ -0.2
MED28-203ENST00000503945 DEFB128Q7Z7B8 93 aa13.79□□□□□ -0.2
MED28-203ENST00000503945 SRBD1Q8N5C6 995 aaKnown RBP13.79□□□□□ -0.2
MED28-203ENST00000503945 PPTC7Q8NI37 304 aa13.79□□□□□ -0.2
MED28-203ENST00000503945 ADAMTS19Q8TE59 1207 aa13.79□□□□□ -0.2
MED28-203ENST00000503945 PPP1R13LQ8WUF5 828 aa13.79□□□□□ -0.2
MED28-203ENST00000503945 CCDC136Q96JN2 1154 aa13.79□□□□□ -0.2
MED28-203ENST00000503945 SPATA33Q96N06 139 aa13.79□□□□□ -0.2
MED28-203ENST00000503945 KATNAL1Q9BW62 490 aa13.79□□□□□ -0.2
MED28-203ENST00000503945 PSTPIP2Q9H939 334 aa13.79□□□□□ -0.2
MED28-203ENST00000503945 RTEL1Q9NZ71 1219 aa13.79□□□□□ -0.2
MED28-203ENST00000503945 PCDHA11Q9Y5I1 949 aa13.79□□□□□ -0.2
MED28-203ENST00000503945 RFXAPO00287 272 aa13.78□□□□□ -0.2
MED28-203ENST00000503945 PITPNM1O00562 1244 aa13.78□□□□□ -0.2
MED28-203ENST00000503945 RGS20O76081 388 aa13.78□□□□□ -0.2
MED28-203ENST00000503945 IQCF3P0C7M6 154 aa13.78□□□□□ -0.2
MED28-203ENST00000503945 ACTN1P12814 892 aa13.78□□□□□ -0.2
MED28-203ENST00000503945 ATP2A2P16615 1042 aaKnown RBP13.78□□□□□ -0.2
MED28-203ENST00000503945 RFC2P35250 354 aa13.78□□□□□ -0.2
MED28-203ENST00000503945 SP2Q02086 613 aa13.78□□□□□ -0.2
MED28-203ENST00000503945 PPP2R2DQ66LE6 453 aa13.78□□□□□ -0.2
MED28-203ENST00000503945 DHX32Q7L7V1 743 aaKnown RBP13.78□□□□□ -0.2
MED28-203ENST00000503945 SESTD1Q86VW0 696 aa13.78□□□□□ -0.2
MED28-203ENST00000503945 SKAP1Q86WV1 359 aa13.78□□□□□ -0.2
MED28-203ENST00000503945 CMTR1Q8N1G2 835 aaKnown RBP13.78□□□□□ -0.2
MED28-203ENST00000503945 CCDC82Q8N4S0 544 aa13.78□□□□□ -0.2
MED28-203ENST00000503945 CCDC155Q8N6L0 562 aa13.78□□□□□ -0.2
MED28-203ENST00000503945 KAT2BQ92831 832 aa13.78□□□□□ -0.2
MED28-203ENST00000503945 ZFP91Q96JP5 570 aaPredicted RBP13.78□□□□□ -0.2
MED28-203ENST00000503945 ALG1Q9BT22 464 aa13.78□□□□□ -0.2
MED28-203ENST00000503945 LRRC2Q9BYS8 371 aa13.78□□□□□ -0.2
MED28-203ENST00000503945 FTOQ9C0B1 505 aaKnown RBP eCLIP13.78□□□□□ -0.2
MED28-203ENST00000503945 RAPGEFL1Q9UHV5 662 aa13.78□□□□□ -0.2
MED28-203ENST00000503945 REV3LO60673 3130 aa13.78□□□□□ -0.2
MED28-203ENST00000503945 SCN10AQ9Y5Y9 1956 aa13.78□□□□□ -0.2
MED28-203ENST00000503945 TET1Q8NFU7 2136 aa13.78□□□□□ -0.2
MED28-203ENST00000503945 PIK3CDO00329 1044 aa13.77□□□□□ -0.21
MED28-203ENST00000503945 NCOR1O75376 2440 aa13.77□□□□□ -0.21
MED28-203ENST00000503945 CDC45O75419 566 aa13.77□□□□□ -0.21
MED28-203ENST00000503945 GGPS1O95749 300 aa13.77□□□□□ -0.21
MED28-203ENST00000503945 PSEN2P49810 448 aa13.77□□□□□ -0.21
MED28-203ENST00000503945 MUC3AQ02505 3323 aa13.77□□□□□ -0.21
MED28-203ENST00000503945 NEDD9Q14511 834 aa13.77□□□□□ -0.21
MED28-203ENST00000503945 KRT32Q14532 448 aa13.77□□□□□ -0.21
MED28-203ENST00000503945 MFSD10Q14728 455 aa13.77□□□□□ -0.21
MED28-203ENST00000503945 KIAA0753Q2KHM9 967 aa13.77□□□□□ -0.21
MED28-203ENST00000503945 TSGA10IPQ3SY00 556 aa13.77□□□□□ -0.21
MED28-203ENST00000503945 XRRA1Q6P2D8 792 aa13.77□□□□□ -0.21
MED28-203ENST00000503945 USP17L6PQ6QN14 398 aa13.77□□□□□ -0.21
MED28-203ENST00000503945 MICALL1Q8N3F8 863 aa13.77□□□□□ -0.21
MED28-203ENST00000503945 UHRF1Q96T88 793 aaPredicted RBP13.77□□□□□ -0.21
MED28-203ENST00000503945 HDAC6Q9UBN7 1215 aa13.77□□□□□ -0.21
MED28-203ENST00000503945 PRRC2BQ5JSZ5 2229 aaKnown RBP13.76□□□□□ -0.21
MED28-203ENST00000503945 SPATA31C2B4DYI2 1134 aa13.76□□□□□ -0.21
MED28-203ENST00000503945 RBAK-RBAKDNI3L0D1 243 aa13.76□□□□□ -0.21
MED28-203ENST00000503945 SORBS3O60504 671 aa13.76□□□□□ -0.21
MED28-203ENST00000503945 PLEKHA8P1O95397 391 aa13.76□□□□□ -0.21
MED28-203ENST00000503945 HMGB1P09429 215 aaKnown RBP13.76□□□□□ -0.21
MED28-203ENST00000503945 BMP1P13497 986 aa13.76□□□□□ -0.21
MED28-203ENST00000503945 RXRAP19793 462 aa13.76□□□□□ -0.21
MED28-203ENST00000503945 FGD1P98174 961 aa13.76□□□□□ -0.21
MED28-203ENST00000503945 EXOSC10Q01780 885 aaKnown RBP13.76□□□□□ -0.21
MED28-203ENST00000503945 HSDL1Q3SXM5 330 aa13.76□□□□□ -0.21
MED28-203ENST00000503945 GDF6Q6KF10 455 aaPredicted RBP13.76□□□□□ -0.21
MED28-203ENST00000503945 NLRX1Q86UT6 975 aa13.76□□□□□ -0.21
MED28-203ENST00000503945 SGMS1Q86VZ5 419 aa13.76□□□□□ -0.21
MED28-203ENST00000503945 IL31RAQ8NI17 732 aa13.76□□□□□ -0.21
MED28-203ENST00000503945 CAGE1Q8TC20 777 aa13.76□□□□□ -0.21
MED28-203ENST00000503945 USP26Q9BXU7 913 aa13.76□□□□□ -0.21
MED28-203ENST00000503945 CERS4Q9HA82 394 aa13.76□□□□□ -0.21
MED28-203ENST00000503945 GTF2IRD1Q9UHL9 959 aa13.76□□□□□ -0.21
MED28-203ENST00000503945 NOP56O00567 594 aaKnown RBP13.75□□□□□ -0.21
MED28-203ENST00000503945 MEIS2O14770 477 aa13.75□□□□□ -0.21
MED28-203ENST00000503945 PARNO95453 639 aaKnown RBP13.75□□□□□ -0.21
MED28-203ENST00000503945 ICAM3P32942 547 aa13.75□□□□□ -0.21
MED28-203ENST00000503945 MRPS9P82933 396 aaKnown RBP13.75□□□□□ -0.21
MED28-203ENST00000503945 TFF2Q03403 129 aa13.75□□□□□ -0.21
MED28-203ENST00000503945 PCNX4Q63HM2 1172 aa13.75□□□□□ -0.21
MED28-203ENST00000503945 RAB11FIP4Q86YS3 637 aa13.75□□□□□ -0.21
MED28-203ENST00000503945 GIMAP8Q8ND71 665 aaPredicted RBP13.75□□□□□ -0.21
MED28-203ENST00000503945 AFAP1L1Q8TED9 768 aa13.75□□□□□ -0.21
MED28-203ENST00000503945 NECAB3Q96P71 396 aaPredicted RBP13.75□□□□□ -0.21
MED28-203ENST00000503945 TSPYL2Q9H2G4 693 aaPredicted RBP13.75□□□□□ -0.21
MED28-203ENST00000503945 RBM28Q9NW13 759 aaKnown RBP13.75□□□□□ -0.21
MED28-203ENST00000503945 LAMA4Q16363 1823 aa13.74□□□□□ -0.21
MED28-203ENST00000503945 EPOPA6NHQ4 379 aa13.74□□□□□ -0.21
Retrieved 100 of 20,778 RNA–protein pairs in 36.9 ms