RNA–Protein interactions for RNA: ENST00000491233.1

COL6A3-211, Transcript of collagen type VI alpha 3 chain, humanhuman

TSL 3

Gene COL6A3, Length 652 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
COL6A3-211ENST00000491233 KCNV1Q6PIU1 500 aa15.78■□□□□ 0.12
COL6A3-211ENST00000491233 CASC1Q6TDU7 716 aa15.78■□□□□ 0.12
COL6A3-211ENST00000491233 LRRC8DQ7L1W4 858 aa15.78■□□□□ 0.12
COL6A3-211ENST00000491233 C7orf31Q8N865 590 aa15.78■□□□□ 0.12
COL6A3-211ENST00000491233 PPM1EQ8WY54 764 aa15.78■□□□□ 0.12
COL6A3-211ENST00000491233 GPKOWQ92917 476 aaPredicted RBP eCLIP15.78■□□□□ 0.12
COL6A3-211ENST00000491233 SPATA33Q96N06 139 aa15.78■□□□□ 0.12
COL6A3-211ENST00000491233 LSG1Q9H089 658 aaKnown RBP15.78■□□□□ 0.12
COL6A3-211ENST00000491233 CUL9Q8IWT3 2517 aa15.77■□□□□ 0.12
COL6A3-211ENST00000491233 SELPP16109 830 aa15.77■□□□□ 0.12
COL6A3-211ENST00000491233 IGFBP4P22692 258 aa15.77■□□□□ 0.12
COL6A3-211ENST00000491233 KIF5BP33176 963 aa15.77■□□□□ 0.12
COL6A3-211ENST00000491233 SP2Q02086 613 aa15.77■□□□□ 0.12
COL6A3-211ENST00000491233 RBL2Q08999 1139 aa15.77■□□□□ 0.12
COL6A3-211ENST00000491233 MAP3K14Q99558 947 aa15.77■□□□□ 0.12
COL6A3-211ENST00000491233 ESYT1Q9BSJ8 1104 aa15.77■□□□□ 0.12
COL6A3-211ENST00000491233 SPZ1Q9BXG8 430 aa15.77■□□□□ 0.12
COL6A3-211ENST00000491233 PRDM6Q9NQX0 595 aa15.77■□□□□ 0.12
COL6A3-211ENST00000491233 CHD9Q3L8U1 2897 aa15.76■□□□□ 0.11
COL6A3-211ENST00000491233 SH2B2O14492 632 aaPredicted RBP15.76■□□□□ 0.11
COL6A3-211ENST00000491233 SLC27A2O14975 620 aa15.76■□□□□ 0.11
COL6A3-211ENST00000491233 PLEKHA8P1O95397 391 aa15.76■□□□□ 0.11
COL6A3-211ENST00000491233 CA3P07451 260 aa15.76■□□□□ 0.11
COL6A3-211ENST00000491233 COL9A3Q14050 684 aaPredicted RBP15.76■□□□□ 0.11
COL6A3-211ENST00000491233 NFXL1Q6ZNB6 911 aa15.76■□□□□ 0.11
COL6A3-211ENST00000491233 RRP36Q96EU6 259 aaKnown RBP15.76■□□□□ 0.11
COL6A3-211ENST00000491233 TMEM87BQ96K49 555 aa15.76■□□□□ 0.11
COL6A3-211ENST00000491233 MTA3Q9BTC8 594 aa15.76■□□□□ 0.11
COL6A3-211ENST00000491233 CCDC69A6NI79 296 aa15.75■□□□□ 0.11
COL6A3-211ENST00000491233 PPFIA4O75335 1185 aa15.75■□□□□ 0.11
COL6A3-211ENST00000491233 BAIAP3O94812 1187 aa15.75■□□□□ 0.11
COL6A3-211ENST00000491233 TGFB3P10600 412 aa15.75■□□□□ 0.11
COL6A3-211ENST00000491233 CKBP12277 381 aa15.75■□□□□ 0.11
COL6A3-211ENST00000491233 RXRAP19793 462 aa15.75■□□□□ 0.11
COL6A3-211ENST00000491233 MCM5P33992 734 aa15.75■□□□□ 0.11
COL6A3-211ENST00000491233 MRPS9P82933 396 aaKnown RBP15.75■□□□□ 0.11
COL6A3-211ENST00000491233 GPNMBQ14956 572 aa15.75■□□□□ 0.11
COL6A3-211ENST00000491233 GNPTABQ3T906 1256 aa15.75■□□□□ 0.11
COL6A3-211ENST00000491233 RAB11FIP4Q86YS3 637 aa15.75■□□□□ 0.11
COL6A3-211ENST00000491233 HERC6Q8IVU3 1022 aa15.75■□□□□ 0.11
COL6A3-211ENST00000491233 WNT8BQ93098 351 aa15.75■□□□□ 0.11
COL6A3-211ENST00000491233 MLXIPQ9HAP2 919 aa15.75■□□□□ 0.11
COL6A3-211ENST00000491233 ANO2Q9NQ90 1003 aa15.75■□□□□ 0.11
COL6A3-211ENST00000491233 SEC63Q9UGP8 760 aaKnown RBP15.75■□□□□ 0.11
COL6A3-211ENST00000491233 MICAL3Q7RTP6 2002 aa15.75■□□□□ 0.11
COL6A3-211ENST00000491233 PRUNE2Q8WUY3 3088 aa15.74■□□□□ 0.11
COL6A3-211ENST00000491233 NBNO60934 754 aa15.74■□□□□ 0.11
COL6A3-211ENST00000491233 KCNJ6P48051 423 aa15.74■□□□□ 0.11
COL6A3-211ENST00000491233 ZNF200P98182 395 aaPredicted RBP15.74■□□□□ 0.11
COL6A3-211ENST00000491233 SEMA3FQ13275 785 aa15.74■□□□□ 0.11
COL6A3-211ENST00000491233 PTK7Q13308 1070 aa15.74■□□□□ 0.11
COL6A3-211ENST00000491233 HIC1Q14526 733 aa15.74■□□□□ 0.11
COL6A3-211ENST00000491233 CCDC85BQ15834 202 aaPredicted RBP15.74■□□□□ 0.11
COL6A3-211ENST00000491233 TRIM71Q2Q1W2 868 aaKnown RBP15.74■□□□□ 0.11
COL6A3-211ENST00000491233 CREB3L3Q68CJ9 461 aa15.74■□□□□ 0.11
COL6A3-211ENST00000491233 SKAP1Q86WV1 359 aa15.74■□□□□ 0.11
COL6A3-211ENST00000491233 SMARCC2Q8TAQ2 1214 aa15.74■□□□□ 0.11
COL6A3-211ENST00000491233 PHOSPHO2Q8TCD6 241 aa15.74■□□□□ 0.11
COL6A3-211ENST00000491233 CUL5Q93034 780 aa15.74■□□□□ 0.11
COL6A3-211ENST00000491233 INPP4AQ96PE3 977 aaPredicted RBP15.74■□□□□ 0.11
COL6A3-211ENST00000491233 LZTS2Q9BRK4 669 aa15.74■□□□□ 0.11
COL6A3-211ENST00000491233 C16orf70Q9BSU1 422 aa15.74■□□□□ 0.11
COL6A3-211ENST00000491233 BCAS3Q9H6U6 928 aa15.74■□□□□ 0.11
COL6A3-211ENST00000491233 THEGQ9P2T0 379 aa15.74■□□□□ 0.11
COL6A3-211ENST00000491233 A0A0C4DFX4 3053 aa15.73■□□□□ 0.11
COL6A3-211ENST00000491233 RBAK-RBAKDNI3L0D1 243 aa15.73■□□□□ 0.11
COL6A3-211ENST00000491233 NOP56O00567 594 aaKnown RBP15.73■□□□□ 0.11
COL6A3-211ENST00000491233 FIBPO43427 364 aa15.73■□□□□ 0.11
COL6A3-211ENST00000491233 STAM2O75886 525 aa15.73■□□□□ 0.11
COL6A3-211ENST00000491233 ARHGEF15O94989 841 aa15.73■□□□□ 0.11
COL6A3-211ENST00000491233 PARNO95453 639 aaKnown RBP15.73■□□□□ 0.11
COL6A3-211ENST00000491233 CXCL10P02778 98 aa15.73■□□□□ 0.11
COL6A3-211ENST00000491233 LGALS2P05162 132 aa15.73■□□□□ 0.11
COL6A3-211ENST00000491233 SMARCA1P28370 1054 aa15.73■□□□□ 0.11
COL6A3-211ENST00000491233 ICAM3P32942 547 aa15.73■□□□□ 0.11
COL6A3-211ENST00000491233 LIFRP42702 1097 aa15.73■□□□□ 0.11
COL6A3-211ENST00000491233 GNAQP50148 359 aa15.73■□□□□ 0.11
COL6A3-211ENST00000491233 WDR5P61964 334 aaKnown RBP15.73■□□□□ 0.11
COL6A3-211ENST00000491233 TJAP1Q5JTD0 557 aa15.73■□□□□ 0.11
COL6A3-211ENST00000491233 CNKSR3Q6P9H4 555 aa15.73■□□□□ 0.11
COL6A3-211ENST00000491233 TRAF7Q6Q0C0 670 aa15.73■□□□□ 0.11
COL6A3-211ENST00000491233 USP17L6PQ6QN14 398 aa15.73■□□□□ 0.11
COL6A3-211ENST00000491233 CMTR1Q8N1G2 835 aaKnown RBP15.73■□□□□ 0.11
COL6A3-211ENST00000491233 SRBD1Q8N5C6 995 aaKnown RBP15.73■□□□□ 0.11
COL6A3-211ENST00000491233 LRRC2Q9BYS8 371 aa15.73■□□□□ 0.11
COL6A3-211ENST00000491233 CERS4Q9HA82 394 aa15.73■□□□□ 0.11
COL6A3-211ENST00000491233 RTEL1Q9NZ71 1219 aa15.73■□□□□ 0.11
COL6A3-211ENST00000491233 PIK3CDO00329 1044 aa15.72■□□□□ 0.11
COL6A3-211ENST00000491233 MEIS2O14770 477 aa15.72■□□□□ 0.11
COL6A3-211ENST00000491233 CALM1P0DP23 149 aa15.72■□□□□ 0.11
COL6A3-211ENST00000491233 CALM2P0DP24 149 aa15.72■□□□□ 0.11
COL6A3-211ENST00000491233 CALM3P0DP25 149 aa15.72■□□□□ 0.11
COL6A3-211ENST00000491233 DEFB103AP81534 67 aa15.72■□□□□ 0.11
COL6A3-211ENST00000491233 NEDD9Q14511 834 aa15.72■□□□□ 0.11
COL6A3-211ENST00000491233 NECTIN1Q15223 517 aa15.72■□□□□ 0.11
COL6A3-211ENST00000491233 TCTN1Q2MV58 587 aa15.72■□□□□ 0.11
COL6A3-211ENST00000491233 ZNF618Q5T7W0 954 aa15.72■□□□□ 0.11
COL6A3-211ENST00000491233 TMTC2Q8N394 836 aa15.72■□□□□ 0.11
COL6A3-211ENST00000491233 MICALL1Q8N3F8 863 aa15.72■□□□□ 0.11
COL6A3-211ENST00000491233 SYMPKQ92797 1274 aaKnown RBP15.72■□□□□ 0.11
Retrieved 100 of 20,778 RNA–protein pairs in 10.5 ms