RNA–Protein interactions for RNA: ENST00000490099.5

TMEM39A-210, Transcript of transmembrane protein 39A, humanhuman

TSL 3

Gene TMEM39A, Length 868 nt, Biotype nonsense mediated decay, Subcellular localisation Endoplasmic reticulum, Ribosome .

Download Table  
RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
TMEM39A-210ENST00000490099 CXXC1Q9P0U4 656 aaPredicted RBP11.25□□□□□ -0.61
TMEM39A-210ENST00000490099 MRVI1Q9Y6F6 885 aa11.25□□□□□ -0.61
TMEM39A-210ENST00000490099 DNAJB2P25686 324 aa11.24□□□□□ -0.61
TMEM39A-210ENST00000490099 RFC2P35250 354 aa11.24□□□□□ -0.61
TMEM39A-210ENST00000490099 CCL23P55773 120 aa11.24□□□□□ -0.61
TMEM39A-210ENST00000490099 FUT2Q10981 343 aa11.24□□□□□ -0.61
TMEM39A-210ENST00000490099 DGKDQ16760 1214 aa11.24□□□□□ -0.61
TMEM39A-210ENST00000490099 XRRA1Q6P2D8 792 aa11.24□□□□□ -0.61
TMEM39A-210ENST00000490099 CASC1Q6TDU7 716 aa11.24□□□□□ -0.61
TMEM39A-210ENST00000490099 TEX2Q8IWB9 1127 aa11.24□□□□□ -0.61
TMEM39A-210ENST00000490099 FANCBQ8NB91 859 aa11.24□□□□□ -0.61
TMEM39A-210ENST00000490099 SLC17A8Q8NDX2 589 aa11.24□□□□□ -0.61
TMEM39A-210ENST00000490099 RRP36Q96EU6 259 aaKnown RBP11.24□□□□□ -0.61
TMEM39A-210ENST00000490099 MYL10Q9BUA6 226 aa11.24□□□□□ -0.61
TMEM39A-210ENST00000490099 PBX4Q9BYU1 374 aa11.24□□□□□ -0.61
TMEM39A-210ENST00000490099 ANO2Q9NQ90 1003 aa11.24□□□□□ -0.61
TMEM39A-210ENST00000490099 PCDHB13Q9Y5F0 798 aa11.24□□□□□ -0.61
TMEM39A-210ENST00000490099 A0A0C4DFX4 3053 aa11.24□□□□□ -0.61
TMEM39A-210ENST00000490099 MYO9BQ13459 2157 aa11.23□□□□□ -0.61
TMEM39A-210ENST00000490099 CUL9Q8IWT3 2517 aa11.23□□□□□ -0.61
TMEM39A-210ENST00000490099 GRXCR1A8MXD5 290 aa11.23□□□□□ -0.61
TMEM39A-210ENST00000490099 PLEKHA8P1O95397 391 aa11.23□□□□□ -0.61
TMEM39A-210ENST00000490099 MYCLP12524 364 aaPredicted RBP11.23□□□□□ -0.61
TMEM39A-210ENST00000490099 CCND2P30279 289 aa11.23□□□□□ -0.61
TMEM39A-210ENST00000490099 HOXC8P31273 242 aa11.23□□□□□ -0.61
TMEM39A-210ENST00000490099 PBX2P40425 430 aa11.23□□□□□ -0.61
TMEM39A-210ENST00000490099 SEMA3FQ13275 785 aa11.23□□□□□ -0.61
TMEM39A-210ENST00000490099 GRIN2CQ14957 1233 aa11.23□□□□□ -0.61
TMEM39A-210ENST00000490099 HSDL1Q3SXM5 330 aa11.23□□□□□ -0.61
TMEM39A-210ENST00000490099 RNF20Q5VTR2 975 aa11.23□□□□□ -0.61
TMEM39A-210ENST00000490099 GDF6Q6KF10 455 aaPredicted RBP11.23□□□□□ -0.61
TMEM39A-210ENST00000490099 TMTC3Q6ZXV5 915 aa11.23□□□□□ -0.61
TMEM39A-210ENST00000490099 DHX32Q7L7V1 743 aaKnown RBP11.23□□□□□ -0.61
TMEM39A-210ENST00000490099 FCHSD1Q86WN1 690 aa11.23□□□□□ -0.61
TMEM39A-210ENST00000490099 DHX37Q8IY37 1157 aaKnown RBP11.23□□□□□ -0.61
TMEM39A-210ENST00000490099 SP7Q8TDD2 431 aaPredicted RBP11.23□□□□□ -0.61
TMEM39A-210ENST00000490099 TIFAQ96CG3 184 aa11.23□□□□□ -0.61
TMEM39A-210ENST00000490099 FAM161BQ96MY7 647 aa11.23□□□□□ -0.61
TMEM39A-210ENST00000490099 NEK1Q96PY6 1258 aa11.23□□□□□ -0.61
TMEM39A-210ENST00000490099 C16orf70Q9BSU1 422 aa11.23□□□□□ -0.61
TMEM39A-210ENST00000490099 ZNF576Q9H609 170 aa11.23□□□□□ -0.61
TMEM39A-210ENST00000490099 GTF2IRD1Q9UHL9 959 aa11.23□□□□□ -0.61
TMEM39A-210ENST00000490099 SLC12A7Q9Y666 1083 aa11.23□□□□□ -0.61
TMEM39A-210ENST00000490099 CCDC69A6NI79 296 aa11.22□□□□□ -0.61
TMEM39A-210ENST00000490099 CDC45O75419 566 aa11.22□□□□□ -0.61
TMEM39A-210ENST00000490099 UBA1P22314 1058 aaKnown RBP11.22□□□□□ -0.61
TMEM39A-210ENST00000490099 PSEN2P49810 448 aa11.22□□□□□ -0.61
TMEM39A-210ENST00000490099 BFSP2Q13515 415 aa11.22□□□□□ -0.61
TMEM39A-210ENST00000490099 PTGISQ16647 500 aa11.22□□□□□ -0.61
TMEM39A-210ENST00000490099 TRIM71Q2Q1W2 868 aaKnown RBP11.22□□□□□ -0.61
TMEM39A-210ENST00000490099 FAM47CQ5HY64 1035 aa11.22□□□□□ -0.61
TMEM39A-210ENST00000490099 PCNX4Q63HM2 1172 aa11.22□□□□□ -0.61
TMEM39A-210ENST00000490099 APOA5Q6Q788 366 aa11.22□□□□□ -0.61
TMEM39A-210ENST00000490099 USP17L6PQ6QN14 398 aa11.22□□□□□ -0.61
TMEM39A-210ENST00000490099 OTOP2Q7RTS6 562 aa11.22□□□□□ -0.61
TMEM39A-210ENST00000490099 FBXL16Q8N461 479 aa11.22□□□□□ -0.61
TMEM39A-210ENST00000490099 CAGE1Q8TC20 777 aa11.22□□□□□ -0.61
TMEM39A-210ENST00000490099 PPP1R13LQ8WUF5 828 aa11.22□□□□□ -0.61
TMEM39A-210ENST00000490099 DHX38Q92620 1227 aaKnown RBP11.22□□□□□ -0.61
TMEM39A-210ENST00000490099 GPKOWQ92917 476 aaPredicted RBP eCLIP11.22□□□□□ -0.613e-8■■■■■ 71.9
TMEM39A-210ENST00000490099 MS4A3Q96HJ5 214 aa11.22□□□□□ -0.61
TMEM39A-210ENST00000490099 SCLYQ96I15 445 aa11.22□□□□□ -0.61
TMEM39A-210ENST00000490099 SENP7Q9BQF6 1050 aa11.22□□□□□ -0.61
TMEM39A-210ENST00000490099 MTIF3Q9H2K0 278 aaKnown RBP11.22□□□□□ -0.61
TMEM39A-210ENST00000490099 BCAS3Q9H6U6 928 aa11.22□□□□□ -0.61
TMEM39A-210ENST00000490099 FAM217BQ9NTX9 383 aaPredicted RBP11.22□□□□□ -0.61
TMEM39A-210ENST00000490099 BRPF3Q9ULD4 1205 aa11.22□□□□□ -0.61
TMEM39A-210ENST00000490099 TET1Q8NFU7 2136 aa11.21□□□□□ -0.61
TMEM39A-210ENST00000490099 CHD9Q3L8U1 2897 aa11.21□□□□□ -0.61
TMEM39A-210ENST00000490099 GABBR2O75899 941 aa11.21□□□□□ -0.61
TMEM39A-210ENST00000490099 PARNO95453 639 aaKnown RBP11.21□□□□□ -0.61
TMEM39A-210ENST00000490099 GGPS1O95749 300 aa11.21□□□□□ -0.61
TMEM39A-210ENST00000490099 CXCL10P02778 98 aa11.21□□□□□ -0.61
TMEM39A-210ENST00000490099 RCAN1P53805 252 aa11.21□□□□□ -0.61
TMEM39A-210ENST00000490099 HIC1Q14526 733 aa11.21□□□□□ -0.61
TMEM39A-210ENST00000490099 MFSD10Q14728 455 aa11.21□□□□□ -0.61
TMEM39A-210ENST00000490099 ADCK5Q3MIX3 580 aa11.21□□□□□ -0.61
TMEM39A-210ENST00000490099 TRAF7Q6Q0C0 670 aa11.21□□□□□ -0.61
TMEM39A-210ENST00000490099 METTL7BQ6UX53 244 aa11.21□□□□□ -0.61
TMEM39A-210ENST00000490099 NFXL1Q6ZNB6 911 aa11.21□□□□□ -0.61
TMEM39A-210ENST00000490099 CMTR1Q8N1G2 835 aaKnown RBP11.21□□□□□ -0.61
TMEM39A-210ENST00000490099 PHOSPHO2Q8TCD6 241 aa11.21□□□□□ -0.61
TMEM39A-210ENST00000490099 AFAP1L1Q8TED9 768 aa11.21□□□□□ -0.61
TMEM39A-210ENST00000490099 ZFP91Q96JP5 570 aaPredicted RBP11.21□□□□□ -0.61
TMEM39A-210ENST00000490099 SPATA33Q96N06 139 aa11.21□□□□□ -0.61
TMEM39A-210ENST00000490099 KATNAL1Q9BW62 490 aa11.21□□□□□ -0.61
TMEM39A-210ENST00000490099 LRRC2Q9BYS8 371 aa11.21□□□□□ -0.61
TMEM39A-210ENST00000490099 PSTPIP2Q9H939 334 aa11.21□□□□□ -0.61
TMEM39A-210ENST00000490099 HDAC6Q9UBN7 1215 aa11.21□□□□□ -0.61
TMEM39A-210ENST00000490099 FIBPO43427 364 aa11.2□□□□□ -0.62
TMEM39A-210ENST00000490099 RXRAP19793 462 aa11.2□□□□□ -0.62
TMEM39A-210ENST00000490099 PTK7Q13308 1070 aa11.2□□□□□ -0.62
TMEM39A-210ENST00000490099 NEDD9Q14511 834 aa11.2□□□□□ -0.62
TMEM39A-210ENST00000490099 KRT32Q14532 448 aa11.2□□□□□ -0.62
TMEM39A-210ENST00000490099 RAB30Q15771 203 aa11.2□□□□□ -0.62
TMEM39A-210ENST00000490099 KIAA0753Q2KHM9 967 aa11.2□□□□□ -0.62
TMEM39A-210ENST00000490099 GNPTABQ3T906 1256 aa11.2□□□□□ -0.62
TMEM39A-210ENST00000490099 RETREG2Q8NC44 543 aa11.2□□□□□ -0.62
TMEM39A-210ENST00000490099 PIBF1Q8WXW3 757 aa11.2□□□□□ -0.62
TMEM39A-210ENST00000490099 MYLIPQ8WY64 445 aa11.2□□□□□ -0.62
Retrieved 100 of 20,778 RNA–protein pairs in 38.4 ms