RNA–Protein interactions for RNA: ENST00000489045.5

COL9A3-213, Transcript of collagen type IX alpha 3 chain, humanhuman

TSL 5

Gene COL9A3, Length 838 nt, Biotype processed transcript, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
COL9A3-213ENST00000489045 TSGA10IPQ3SY00 556 aa26.52■■□□□ 1.84
COL9A3-213ENST00000489045 GDF6Q6KF10 455 aaPredicted RBP26.52■■□□□ 1.84
COL9A3-213ENST00000489045 CCDC82Q8N4S0 544 aa26.52■■□□□ 1.84
COL9A3-213ENST00000489045 SPATA33Q96N06 139 aa26.52■■□□□ 1.84
COL9A3-213ENST00000489045 KATNAL1Q9BW62 490 aa26.52■■□□□ 1.84
COL9A3-213ENST00000489045 PIK3CDO00329 1044 aa26.51■■□□□ 1.83
COL9A3-213ENST00000489045 PITPNM1O00562 1244 aa26.51■■□□□ 1.83
COL9A3-213ENST00000489045 HOXD8P13378 290 aaPredicted RBP26.51■■□□□ 1.83
COL9A3-213ENST00000489045 PBX2P40425 430 aa26.51■■□□□ 1.83
COL9A3-213ENST00000489045 EXOSC10Q01780 885 aaKnown RBP26.51■■□□□ 1.83
COL9A3-213ENST00000489045 GNPTABQ3T906 1256 aa26.51■■□□□ 1.83
COL9A3-213ENST00000489045 APOA5Q6Q788 366 aa26.51■■□□□ 1.83
COL9A3-213ENST00000489045 SYNE3Q6ZMZ3 975 aa26.51■■□□□ 1.83
COL9A3-213ENST00000489045 DHX32Q7L7V1 743 aaKnown RBP26.51■■□□□ 1.83
COL9A3-213ENST00000489045 DEFB128Q7Z7B8 93 aa26.51■■□□□ 1.83
COL9A3-213ENST00000489045 MYLIPQ8WY64 445 aa26.51■■□□□ 1.83
COL9A3-213ENST00000489045 TIFAQ96CG3 184 aa26.51■■□□□ 1.83
COL9A3-213ENST00000489045 INPP4AQ96PE3 977 aaPredicted RBP26.51■■□□□ 1.83
COL9A3-213ENST00000489045 ALG1Q9BT22 464 aa26.51■■□□□ 1.83
COL9A3-213ENST00000489045 PBX4Q9BYU1 374 aa26.51■■□□□ 1.83
COL9A3-213ENST00000489045 STAM2O75886 525 aa26.5■■□□□ 1.83
COL9A3-213ENST00000489045 BFSP2Q13515 415 aa26.5■■□□□ 1.83
COL9A3-213ENST00000489045 MFSD10Q14728 455 aa26.5■■□□□ 1.83
COL9A3-213ENST00000489045 RETREG2Q8NC44 543 aa26.5■■□□□ 1.83
COL9A3-213ENST00000489045 CTAGE1Q96RT6 745 aa26.5■■□□□ 1.83
COL9A3-213ENST00000489045 MLXIPQ9HAP2 919 aa26.5■■□□□ 1.83
COL9A3-213ENST00000489045 HDAC6Q9UBN7 1215 aa26.5■■□□□ 1.83
COL9A3-213ENST00000489045 GTF2IRD1Q9UHL9 959 aa26.5■■□□□ 1.83
COL9A3-213ENST00000489045 HAS3O00219 553 aa26.49■■□□□ 1.83
COL9A3-213ENST00000489045 PFKMP08237 780 aa26.49■■□□□ 1.83
COL9A3-213ENST00000489045 KRT32Q14532 448 aa26.49■■□□□ 1.83
COL9A3-213ENST00000489045 KIAA0753Q2KHM9 967 aa26.49■■□□□ 1.83
COL9A3-213ENST00000489045 C7orf31Q8N865 590 aa26.49■■□□□ 1.83
COL9A3-213ENST00000489045 TET1Q8NFU7 2136 aa26.49■■□□□ 1.83
COL9A3-213ENST00000489045 PSTPIP2Q9H939 334 aa26.49■■□□□ 1.83
COL9A3-213ENST00000489045 RTEL1Q9NZ71 1219 aa26.49■■□□□ 1.83
COL9A3-213ENST00000489045 PPFIA4O75335 1185 aa26.48■■□□□ 1.83
COL9A3-213ENST00000489045 IQCF3P0C7M6 154 aa26.48■■□□□ 1.83
COL9A3-213ENST00000489045 ICAM3P32942 547 aa26.48■■□□□ 1.83
COL9A3-213ENST00000489045 RFC2P35250 354 aa26.48■■□□□ 1.83
COL9A3-213ENST00000489045 SEMA3FQ13275 785 aa26.48■■□□□ 1.83
COL9A3-213ENST00000489045 PCNX4Q63HM2 1172 aa26.48■■□□□ 1.83
COL9A3-213ENST00000489045 CCDC155Q8N6L0 562 aa26.48■■□□□ 1.83
COL9A3-213ENST00000489045 BCAS3Q9H6U6 928 aa26.48■■□□□ 1.83
COL9A3-213ENST00000489045 RBM28Q9NW13 759 aaKnown RBP26.48■■□□□ 1.83
COL9A3-213ENST00000489045 BRPF3Q9ULD4 1205 aa26.48■■□□□ 1.83
COL9A3-213ENST00000489045 CNTNAP5Q8WYK1 1306 aa26.47■■□□□ 1.83
COL9A3-213ENST00000489045 ZBBXA8MT70 800 aa26.47■■□□□ 1.83
COL9A3-213ENST00000489045 FIBPO43427 364 aa26.47■■□□□ 1.83
COL9A3-213ENST00000489045 HEATR3Q7Z4Q2 680 aa26.47■■□□□ 1.83
COL9A3-213ENST00000489045 CAGE1Q8TC20 777 aa26.47■■□□□ 1.83
COL9A3-213ENST00000489045 ZNF576Q9H609 170 aa26.47■■□□□ 1.83
COL9A3-213ENST00000489045 CHD9Q3L8U1 2897 aa26.46■■□□□ 1.83
COL9A3-213ENST00000489045 SPATA31C2B4DYI2 1134 aa26.46■■□□□ 1.83
COL9A3-213ENST00000489045 ZBTB43O43298 467 aa26.46■■□□□ 1.83
COL9A3-213ENST00000489045 GRIN2CQ14957 1233 aa26.46■■□□□ 1.83
COL9A3-213ENST00000489045 UBE2SQ16763 222 aa26.46■■□□□ 1.83
COL9A3-213ENST00000489045 RTN1Q16799 776 aa26.46■■□□□ 1.83
COL9A3-213ENST00000489045 XRRA1Q6P2D8 792 aa26.46■■□□□ 1.83
COL9A3-213ENST00000489045 DHX38Q92620 1227 aaKnown RBP26.46■■□□□ 1.83
COL9A3-213ENST00000489045 SLC4A7Q9Y6M7 1214 aa26.46■■□□□ 1.83
COL9A3-213ENST00000489045 FOSL2P15408 326 aa26.45■■□□□ 1.82
COL9A3-213ENST00000489045 NEDD9Q14511 834 aa26.45■■□□□ 1.82
COL9A3-213ENST00000489045 RAB30Q15771 203 aa26.45■■□□□ 1.82
COL9A3-213ENST00000489045 AFAP1L1Q8TED9 768 aa26.45■■□□□ 1.82
COL9A3-213ENST00000489045 C16orf70Q9BSU1 422 aa26.45■■□□□ 1.82
COL9A3-213ENST00000489045 MSRAQ9UJ68 235 aa26.45■■□□□ 1.82
COL9A3-213ENST00000489045 KLF18A0A0U1RQI7 1052 aa26.44■■□□□ 1.82
COL9A3-213ENST00000489045 HMGB1P09429 215 aaKnown RBP26.44■■□□□ 1.82
COL9A3-213ENST00000489045 ACTN1P12814 892 aa26.44■■□□□ 1.82
COL9A3-213ENST00000489045 METTL7BQ6UX53 244 aa26.44■■□□□ 1.82
COL9A3-213ENST00000489045 CYFIP1Q7L576 1253 aa26.44■■□□□ 1.82
COL9A3-213ENST00000489045 MAFAQ8NHW3 353 aaPredicted RBP26.44■■□□□ 1.82
COL9A3-213ENST00000489045 KCNB2Q92953 911 aa26.44■■□□□ 1.82
COL9A3-213ENST00000489045 MYO9BQ13459 2157 aa26.43■■□□□ 1.82
COL9A3-213ENST00000489045 GOLGA8AA7E2F4 631 aa26.43■■□□□ 1.82
COL9A3-213ENST00000489045 GOLGA8BA8MQT2 603 aa26.43■■□□□ 1.82
COL9A3-213ENST00000489045 NOP56O00567 594 aaKnown RBP26.43■■□□□ 1.82
COL9A3-213ENST00000489045 LGALS2P05162 132 aa26.43■■□□□ 1.82
COL9A3-213ENST00000489045 CPA1P15085 419 aa26.43■■□□□ 1.82
COL9A3-213ENST00000489045 RBL2Q08999 1139 aa26.43■■□□□ 1.82
COL9A3-213ENST00000489045 FUT2Q10981 343 aa26.43■■□□□ 1.82
COL9A3-213ENST00000489045 WWC2Q6AWC2 1192 aa26.43■■□□□ 1.82
COL9A3-213ENST00000489045 FTOQ9C0B1 505 aaKnown RBP eCLIP26.43■■□□□ 1.824e-9■□□□□ 8
COL9A3-213ENST00000489045 NKX2-4Q9H2Z4 354 aa26.43■■□□□ 1.82
COL9A3-213ENST00000489045 YBX2Q9Y2T7 364 aaKnown RBP26.43■■□□□ 1.82
COL9A3-213ENST00000489045 EYSQ5T1H1 3165 aa26.43■■□□□ 1.82
COL9A3-213ENST00000489045 PTPRSQ13332 1948 aa26.43■■□□□ 1.82
COL9A3-213ENST00000489045 SELPP16109 830 aa26.42■■□□□ 1.82
COL9A3-213ENST00000489045 HSPA4P34932 840 aa26.42■■□□□ 1.82
COL9A3-213ENST00000489045 RABGGTBP53611 331 aa26.42■■□□□ 1.82
COL9A3-213ENST00000489045 ZNF200P98182 395 aaPredicted RBP26.42■■□□□ 1.82
COL9A3-213ENST00000489045 PTK7Q13308 1070 aa26.42■■□□□ 1.82
COL9A3-213ENST00000489045 HIC1Q14526 733 aa26.42■■□□□ 1.82
COL9A3-213ENST00000489045 LRRC8DQ7L1W4 858 aa26.42■■□□□ 1.82
COL9A3-213ENST00000489045 NLRX1Q86UT6 975 aa26.42■■□□□ 1.82
COL9A3-213ENST00000489045 SNX14Q9Y5W7 946 aa26.42■■□□□ 1.82
COL9A3-213ENST00000489045 SPDYE3A6NKU9 549 aa26.41■■□□□ 1.82
COL9A3-213ENST00000489045 H3BRB1 525 aa26.41■■□□□ 1.82
COL9A3-213ENST00000489045 CKBP12277 381 aa26.41■■□□□ 1.82
Retrieved 100 of 20,778 RNA–protein pairs in 34.5 ms