RNA–Protein interactions for RNA: ENST00000485397.1

COL27A1-205, Transcript of collagen type XXVII alpha 1 chain, humanhuman

TSL 5

Gene COL27A1, Length 463 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
COL27A1-205ENST00000485397 WTAPQ15007 396 aa22.31■■□□□ 1.16
COL27A1-205ENST00000485397 HSDL1Q3SXM5 330 aa22.31■■□□□ 1.16
COL27A1-205ENST00000485397 CELF3Q5SZQ8 465 aaKnown RBP22.31■■□□□ 1.16
COL27A1-205ENST00000485397 RALYLQ86SE5 291 aaKnown RBP22.31■■□□□ 1.16
COL27A1-205ENST00000485397 SAMD3Q8N6K7 520 aa22.31■■□□□ 1.16
COL27A1-205ENST00000485397 NCOA7Q8NI08 942 aa22.31■■□□□ 1.16
COL27A1-205ENST00000485397 GPKOWQ92917 476 aaPredicted RBP eCLIP22.31■■□□□ 1.16
COL27A1-205ENST00000485397 WNT8BQ93098 351 aa22.31■■□□□ 1.16
COL27A1-205ENST00000485397 SPATA33Q96N06 139 aa22.31■■□□□ 1.16
COL27A1-205ENST00000485397 BAZ2BQ9UIF8 2168 aaKnown RBP22.31■■□□□ 1.16
COL27A1-205ENST00000485397 KIF28PB7ZC32 967 aa22.3■■□□□ 1.16
COL27A1-205ENST00000485397 SGSM2O43147 1006 aa22.3■■□□□ 1.16
COL27A1-205ENST00000485397 NBNO60934 754 aa22.3■■□□□ 1.16
COL27A1-205ENST00000485397 HOXD8P13378 290 aaPredicted RBP22.3■■□□□ 1.16
COL27A1-205ENST00000485397 UBA1P22314 1058 aaKnown RBP22.3■■□□□ 1.16
COL27A1-205ENST00000485397 ANTXR2P58335 489 aa22.3■■□□□ 1.16
COL27A1-205ENST00000485397 IRX6P78412 446 aaPredicted RBP22.3■■□□□ 1.16
COL27A1-205ENST00000485397 MRPS5P82675 430 aaKnown RBP22.3■■□□□ 1.16
COL27A1-205ENST00000485397 TAP1Q03518 808 aa22.3■■□□□ 1.16
COL27A1-205ENST00000485397 HIC1Q14526 733 aa22.3■■□□□ 1.16
COL27A1-205ENST00000485397 TCTN1Q2MV58 587 aa22.3■■□□□ 1.16
COL27A1-205ENST00000485397 TMCO2Q7Z6W1 182 aaPredicted RBP22.3■■□□□ 1.16
COL27A1-205ENST00000485397 PIBF1Q8WXW3 757 aa22.3■■□□□ 1.16
COL27A1-205ENST00000485397 PNMA6FA0A0J9YX94 578 aa22.29■■□□□ 1.16
COL27A1-205ENST00000485397 PPFIA4O75335 1185 aa22.29■■□□□ 1.16
COL27A1-205ENST00000485397 CXCL10P02778 98 aa22.29■■□□□ 1.16
COL27A1-205ENST00000485397 CCND2P30279 289 aa22.29■■□□□ 1.16
COL27A1-205ENST00000485397 KCNJ6P48051 423 aa22.29■■□□□ 1.16
COL27A1-205ENST00000485397 WDR5P61964 334 aaKnown RBP22.29■■□□□ 1.16
COL27A1-205ENST00000485397 TRIM71Q2Q1W2 868 aaKnown RBP22.29■■□□□ 1.16
COL27A1-205ENST00000485397 KCNV1Q6PIU1 500 aa22.29■■□□□ 1.16
COL27A1-205ENST00000485397 SPRED2Q7Z698 418 aa22.29■■□□□ 1.16
COL27A1-205ENST00000485397 ARNTL2Q8WYA1 636 aa22.29■■□□□ 1.16
COL27A1-205ENST00000485397 BCAS3Q9H6U6 928 aa22.29■■□□□ 1.16
COL27A1-205ENST00000485397 MTCH2Q9Y6C9 303 aa22.29■■□□□ 1.16
COL27A1-205ENST00000485397 MYH7BA7E2Y1 1941 aa22.29■■□□□ 1.16
COL27A1-205ENST00000485397 TNFRSF10AO00220 468 aa22.28■■□□□ 1.16
COL27A1-205ENST00000485397 TLL1O43897 1013 aa22.28■■□□□ 1.16
COL27A1-205ENST00000485397 DEFB103AP81534 67 aa22.28■■□□□ 1.16
COL27A1-205ENST00000485397 TRAF1Q13077 416 aa22.28■■□□□ 1.16
COL27A1-205ENST00000485397 PTK7Q13308 1070 aa22.28■■□□□ 1.16
COL27A1-205ENST00000485397 SART3Q15020 963 aaKnown RBP22.28■■□□□ 1.16
COL27A1-205ENST00000485397 KRT40Q6A162 431 aa22.28■■□□□ 1.16
COL27A1-205ENST00000485397 CNKSR3Q6P9H4 555 aa22.28■■□□□ 1.16
COL27A1-205ENST00000485397 TRAF7Q6Q0C0 670 aa22.28■■□□□ 1.16
COL27A1-205ENST00000485397 IGDCC4Q8TDY8 1250 aa22.28■■□□□ 1.16
COL27A1-205ENST00000485397 TGFB3P10600 412 aa22.27■■□□□ 1.16
COL27A1-205ENST00000485397 POU3F3P20264 500 aaPredicted RBP22.27■■□□□ 1.16
COL27A1-205ENST00000485397 ZNF618Q5T7W0 954 aa22.27■■□□□ 1.16
COL27A1-205ENST00000485397 CATIPQ7Z7H3 387 aa22.27■■□□□ 1.16
COL27A1-205ENST00000485397 MB21D2Q8IYB1 491 aaPredicted RBP22.27■■□□□ 1.16
COL27A1-205ENST00000485397 ADAMTS19Q8TE59 1207 aa22.27■■□□□ 1.16
COL27A1-205ENST00000485397 C16orf70Q9BSU1 422 aa22.27■■□□□ 1.16
COL27A1-205ENST00000485397 TSPYL2Q9H2G4 693 aaPredicted RBP22.27■■□□□ 1.16
COL27A1-205ENST00000485397 MLXIPQ9HAP2 919 aa22.27■■□□□ 1.16
COL27A1-205ENST00000485397 PRRC2BQ5JSZ5 2229 aaKnown RBP22.26■■□□□ 1.15
COL27A1-205ENST00000485397 LCHNA4D1U4 455 aa22.26■■□□□ 1.15
COL27A1-205ENST00000485397 GTPBP6O43824 516 aaPredicted RBP22.26■■□□□ 1.15
COL27A1-205ENST00000485397 PARNO95453 639 aaKnown RBP22.26■■□□□ 1.15
COL27A1-205ENST00000485397 SKIV2LQ15477 1246 aaKnown RBP22.26■■□□□ 1.15
COL27A1-205ENST00000485397 MAP4K1Q92918 833 aa22.26■■□□□ 1.15
COL27A1-205ENST00000485397 CHD7Q9P2D1 2997 aa22.26■■□□□ 1.15
COL27A1-205ENST00000485397 MRPS9P82933 396 aaKnown RBP22.25■■□□□ 1.15
COL27A1-205ENST00000485397 TFF2Q03403 129 aa22.25■■□□□ 1.15
COL27A1-205ENST00000485397 MBTPS1Q14703 1052 aa22.25■■□□□ 1.15
COL27A1-205ENST00000485397 ZBED2Q9BTP6 218 aa22.25■■□□□ 1.15
COL27A1-205ENST00000485397 MYL10Q9BUA6 226 aa22.25■■□□□ 1.15
COL27A1-205ENST00000485397 RBM8AQ9Y5S9 174 aaKnown RBP22.25■■□□□ 1.15
COL27A1-205ENST00000485397 PTPRSQ13332 1948 aa22.25■■□□□ 1.15
COL27A1-205ENST00000485397 ABHD14A-ACY1A0A1B0GW23 586 aa22.24■■□□□ 1.15
COL27A1-205ENST00000485397 GRB10Q13322 594 aa22.24■■□□□ 1.15
COL27A1-205ENST00000485397 RTEL1Q9NZ71 1219 aa22.24■■□□□ 1.15
COL27A1-205ENST00000485397 SEMA3FQ13275 785 aa22.23■■□□□ 1.15
COL27A1-205ENST00000485397 ZNF654Q8IZM8 581 aa22.23■■□□□ 1.15
COL27A1-205ENST00000485397 IL27Q8NEV9 243 aa22.23■■□□□ 1.15
COL27A1-205ENST00000485397 UHRF1Q96T88 793 aaPredicted RBP22.23■■□□□ 1.15
COL27A1-205ENST00000485397 LY9Q9HBG7 655 aa22.23■■□□□ 1.15
COL27A1-205ENST00000485397 FRMPD4Q14CM0 1322 aa22.23■■□□□ 1.15
COL27A1-205ENST00000485397 C17orf102A2RUQ5 167 aa22.22■■□□□ 1.15
COL27A1-205ENST00000485397 H3BRB1 525 aa22.22■■□□□ 1.15
COL27A1-205ENST00000485397 LPXNO60711 386 aa22.22■■□□□ 1.15
COL27A1-205ENST00000485397 LGALS2P05162 132 aa22.22■■□□□ 1.15
COL27A1-205ENST00000485397 ICAM3P32942 547 aa22.22■■□□□ 1.15
COL27A1-205ENST00000485397 THPOP40225 353 aa22.22■■□□□ 1.15
COL27A1-205ENST00000485397 IKBKEQ14164 716 aa22.22■■□□□ 1.15
COL27A1-205ENST00000485397 FAM117BQ6P1L5 589 aa22.22■■□□□ 1.15
COL27A1-205ENST00000485397 USP17L6PQ6QN14 398 aa22.22■■□□□ 1.15
COL27A1-205ENST00000485397 SERINC5Q86VE9 423 aa22.22■■□□□ 1.15
COL27A1-205ENST00000485397 CTCFLQ8NI51 663 aaPredicted RBP22.22■■□□□ 1.15
COL27A1-205ENST00000485397 INPP4AQ96PE3 977 aaPredicted RBP22.22■■□□□ 1.15
COL27A1-205ENST00000485397 TUT1Q9H6E5 874 aaKnown RBP22.22■■□□□ 1.15
COL27A1-205ENST00000485397 TELO2Q9Y4R8 837 aa22.22■■□□□ 1.15
COL27A1-205ENST00000485397 SPATA31C2B4DYI2 1134 aa22.21■■□□□ 1.15
COL27A1-205ENST00000485397 LGR5O75473 907 aa22.21■■□□□ 1.15
COL27A1-205ENST00000485397 GJB5O95377 273 aa22.21■■□□□ 1.15
COL27A1-205ENST00000485397 SMIM10L2AP0DMW4 78 aa22.21■■□□□ 1.15
COL27A1-205ENST00000485397 SMIM10L2BP0DMW5 78 aa22.21■■□□□ 1.15
COL27A1-205ENST00000485397 BMP1P13497 986 aa22.21■■□□□ 1.15
COL27A1-205ENST00000485397 COL9A3Q14050 684 aaPredicted RBP22.21■■□□□ 1.15
COL27A1-205ENST00000485397 GNPTABQ3T906 1256 aa22.21■■□□□ 1.15
Retrieved 100 of 20,778 RNA–protein pairs in 67.4 ms