RNA–Protein interactions for RNA: ENST00000479554.5

ATG4B-218, Transcript of autophagy related 4B cysteine peptidase, humanhuman

TSL 4

Gene ATG4B, Length 556 nt, Biotype retained intron, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
ATG4B-218ENST00000479554 TGFB3P10600 412 aa16.54■□□□□ 0.24
ATG4B-218ENST00000479554 UBA1P22314 1058 aaKnown RBP16.54■□□□□ 0.24
ATG4B-218ENST00000479554 SMARCA1P28370 1054 aa16.54■□□□□ 0.24
ATG4B-218ENST00000479554 LIFRP42702 1097 aa16.54■□□□□ 0.24
ATG4B-218ENST00000479554 MFSD10Q14728 455 aa16.54■□□□□ 0.24
ATG4B-218ENST00000479554 NECTIN1Q15223 517 aa16.54■□□□□ 0.24
ATG4B-218ENST00000479554 GNPTABQ3T906 1256 aa16.54■□□□□ 0.24
ATG4B-218ENST00000479554 CELF3Q5SZQ8 465 aaKnown RBP16.54■□□□□ 0.24
ATG4B-218ENST00000479554 RNF20Q5VTR2 975 aa16.54■□□□□ 0.24
ATG4B-218ENST00000479554 MYSM1Q5VVJ2 828 aa16.54■□□□□ 0.24
ATG4B-218ENST00000479554 SKAP1Q86WV1 359 aa16.54■□□□□ 0.24
ATG4B-218ENST00000479554 CAGE1Q8TC20 777 aa16.54■□□□□ 0.24
ATG4B-218ENST00000479554 CUL5Q93034 780 aa16.54■□□□□ 0.24
ATG4B-218ENST00000479554 ZFP91Q96JP5 570 aaPredicted RBP16.54■□□□□ 0.24
ATG4B-218ENST00000479554 SPATA33Q96N06 139 aa16.54■□□□□ 0.24
ATG4B-218ENST00000479554 ALG1Q9BT22 464 aa16.54■□□□□ 0.24
ATG4B-218ENST00000479554 NKX2-4Q9H2Z4 354 aa16.54■□□□□ 0.24
ATG4B-218ENST00000479554 GTF2IRD1Q9UHL9 959 aa16.54■□□□□ 0.24
ATG4B-218ENST00000479554 STAM2O75886 525 aa16.53■□□□□ 0.24
ATG4B-218ENST00000479554 HOXD8P13378 290 aaPredicted RBP16.53■□□□□ 0.24
ATG4B-218ENST00000479554 ATP2A2P16615 1042 aaKnown RBP16.53■□□□□ 0.24
ATG4B-218ENST00000479554 RXRAP19793 462 aa16.53■□□□□ 0.24
ATG4B-218ENST00000479554 COL9A3Q14050 684 aaPredicted RBP16.53■□□□□ 0.24
ATG4B-218ENST00000479554 KIAA0753Q2KHM9 967 aa16.53■□□□□ 0.24
ATG4B-218ENST00000479554 HSDL1Q3SXM5 330 aa16.53■□□□□ 0.24
ATG4B-218ENST00000479554 SMARCC2Q8TAQ2 1214 aa16.53■□□□□ 0.24
ATG4B-218ENST00000479554 AFAP1L1Q8TED9 768 aa16.53■□□□□ 0.24
ATG4B-218ENST00000479554 GPKOWQ92917 476 aaPredicted RBP eCLIP16.53■□□□□ 0.24
ATG4B-218ENST00000479554 GAS2L1Q99501 681 aaPredicted RBP16.53■□□□□ 0.24
ATG4B-218ENST00000479554 LRRC2Q9BYS8 371 aa16.53■□□□□ 0.24
ATG4B-218ENST00000479554 FTOQ9C0B1 505 aaKnown RBP eCLIP16.53■□□□□ 0.24
ATG4B-218ENST00000479554 MLXIPQ9HAP2 919 aa16.53■□□□□ 0.24
ATG4B-218ENST00000479554 SLC28A3Q9HAS3 691 aa16.53■□□□□ 0.24
ATG4B-218ENST00000479554 HDAC6Q9UBN7 1215 aa16.53■□□□□ 0.24
ATG4B-218ENST00000479554 YBX2Q9Y2T7 364 aaKnown RBP16.53■□□□□ 0.24
ATG4B-218ENST00000479554 MYH7BA7E2Y1 1941 aa16.53■□□□□ 0.24
ATG4B-218ENST00000479554 HAS3O00219 553 aa16.52■□□□□ 0.24
ATG4B-218ENST00000479554 PPFIA4O75335 1185 aa16.52■□□□□ 0.24
ATG4B-218ENST00000479554 RABGGTBP53611 331 aa16.52■□□□□ 0.24
ATG4B-218ENST00000479554 SP2Q02086 613 aa16.52■□□□□ 0.24
ATG4B-218ENST00000479554 SRBD1Q8N5C6 995 aaKnown RBP16.52■□□□□ 0.24
ATG4B-218ENST00000479554 INPP4AQ96PE3 977 aaPredicted RBP16.52■□□□□ 0.24
ATG4B-218ENST00000479554 CTAGE1Q96RT6 745 aa16.52■□□□□ 0.24
ATG4B-218ENST00000479554 PRDM12Q9H4Q4 367 aa16.52■□□□□ 0.24
ATG4B-218ENST00000479554 PCDHA11Q9Y5I1 949 aa16.52■□□□□ 0.24
ATG4B-218ENST00000479554 SLC12A7Q9Y666 1083 aa16.52■□□□□ 0.24
ATG4B-218ENST00000479554 PIK3CDO00329 1044 aa16.51■□□□□ 0.23
ATG4B-218ENST00000479554 SELPP16109 830 aa16.51■□□□□ 0.23
ATG4B-218ENST00000479554 MRPS9P82933 396 aaKnown RBP16.51■□□□□ 0.23
ATG4B-218ENST00000479554 USP17L6PQ6QN14 398 aa16.51■□□□□ 0.23
ATG4B-218ENST00000479554 LRRC8DQ7L1W4 858 aa16.51■□□□□ 0.23
ATG4B-218ENST00000479554 RAB11FIP4Q86YS3 637 aa16.51■□□□□ 0.23
ATG4B-218ENST00000479554 CMTR1Q8N1G2 835 aaKnown RBP16.51■□□□□ 0.23
ATG4B-218ENST00000479554 DHX38Q92620 1227 aaKnown RBP16.51■□□□□ 0.23
ATG4B-218ENST00000479554 SLC9A7Q96T83 725 aa16.51■□□□□ 0.23
ATG4B-218ENST00000479554 VCANP13611 3396 aa16.51■□□□□ 0.23
ATG4B-218ENST00000479554 NOP56O00567 594 aaKnown RBP16.5■□□□□ 0.23
ATG4B-218ENST00000479554 MEIS2O14770 477 aa16.5■□□□□ 0.23
ATG4B-218ENST00000479554 FIBPO43427 364 aa16.5■□□□□ 0.23
ATG4B-218ENST00000479554 CDC45O75419 566 aa16.5■□□□□ 0.23
ATG4B-218ENST00000479554 ICAM3P32942 547 aa16.5■□□□□ 0.23
ATG4B-218ENST00000479554 RBL2Q08999 1139 aa16.5■□□□□ 0.23
ATG4B-218ENST00000479554 PTK7Q13308 1070 aa16.5■□□□□ 0.23
ATG4B-218ENST00000479554 PPP2R2DQ66LE6 453 aa16.5■□□□□ 0.23
ATG4B-218ENST00000479554 SYNE3Q6ZMZ3 975 aa16.5■□□□□ 0.23
ATG4B-218ENST00000479554 TMTC3Q6ZXV5 915 aa16.5■□□□□ 0.23
ATG4B-218ENST00000479554 MICU3Q86XE3 530 aa16.5■□□□□ 0.23
ATG4B-218ENST00000479554 NEK1Q96PY6 1258 aa16.5■□□□□ 0.23
ATG4B-218ENST00000479554 RTEL1Q9NZ71 1219 aa16.5■□□□□ 0.23
ATG4B-218ENST00000479554 CUL9Q8IWT3 2517 aa16.5■□□□□ 0.23
ATG4B-218ENST00000479554 TRANK1O15050 2925 aa16.49■□□□□ 0.23
ATG4B-218ENST00000479554 BAIAP3O94812 1187 aa16.49■□□□□ 0.23
ATG4B-218ENST00000479554 PARNO95453 639 aaKnown RBP16.49■□□□□ 0.23
ATG4B-218ENST00000479554 CKBP12277 381 aa16.49■□□□□ 0.23
ATG4B-218ENST00000479554 MYOGP15173 224 aa16.49■□□□□ 0.23
ATG4B-218ENST00000479554 NEDD9Q14511 834 aa16.49■□□□□ 0.23
ATG4B-218ENST00000479554 PCNX4Q63HM2 1172 aa16.49■□□□□ 0.23
ATG4B-218ENST00000479554 XRRA1Q6P2D8 792 aa16.49■□□□□ 0.23
ATG4B-218ENST00000479554 METTL7BQ6UX53 244 aa16.49■□□□□ 0.23
ATG4B-218ENST00000479554 SGMS1Q86VZ5 419 aa16.49■□□□□ 0.23
ATG4B-218ENST00000479554 CCDC82Q8N4S0 544 aa16.49■□□□□ 0.23
ATG4B-218ENST00000479554 FANCBQ8NB91 859 aa16.49■□□□□ 0.23
ATG4B-218ENST00000479554 C16orf70Q9BSU1 422 aa16.49■□□□□ 0.23
ATG4B-218ENST00000479554 hCG_1642624A0A1W2PR95 340 aa16.48■□□□□ 0.23
ATG4B-218ENST00000479554 SPATA31C2B4DYI2 1134 aa16.48■□□□□ 0.23
ATG4B-218ENST00000479554 LGALS2P05162 132 aa16.48■□□□□ 0.23
ATG4B-218ENST00000479554 KCNJ6P48051 423 aa16.48■□□□□ 0.23
ATG4B-218ENST00000479554 SEMA3FQ13275 785 aa16.48■□□□□ 0.23
ATG4B-218ENST00000479554 CYFIP1Q7L576 1253 aa16.48■□□□□ 0.23
ATG4B-218ENST00000479554 USP38Q8NB14 1042 aa16.48■□□□□ 0.23
ATG4B-218ENST00000479554 PHOSPHO2Q8TCD6 241 aa16.48■□□□□ 0.23
ATG4B-218ENST00000479554 COL25A1Q9BXS0 654 aaPredicted RBP16.48■□□□□ 0.23
ATG4B-218ENST00000479554 BCAS3Q9H6U6 928 aa16.48■□□□□ 0.23
ATG4B-218ENST00000479554 PSTPIP2Q9H939 334 aa16.48■□□□□ 0.23
ATG4B-218ENST00000479554 TRIP12Q14669 1992 aaPredicted RBP16.47■□□□□ 0.23
ATG4B-218ENST00000479554 H3BRB1 525 aa16.47■□□□□ 0.23
ATG4B-218ENST00000479554 CA3P07451 260 aa16.47■□□□□ 0.23
ATG4B-218ENST00000479554 IGFBP4P22692 258 aa16.47■□□□□ 0.23
ATG4B-218ENST00000479554 ZNF200P98182 395 aaPredicted RBP16.47■□□□□ 0.23
ATG4B-218ENST00000479554 UBE2SQ16763 222 aa16.47■□□□□ 0.23
Retrieved 100 of 20,778 RNA–protein pairs in 16.2 ms