RNA–Protein interactions for RNA: ENST00000478934.5

VPS52-217, Transcript of VPS52, GARP complex subunit, humanhuman

TSL 2

Gene VPS52, Length 2,602 nt, Biotype processed transcript, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS52-217ENST00000478934 ZHX3Q9H4I2 956 aa12□□□□□ -0.49
VPS52-217ENST00000478934 KLRG2A4D1S0 409 aaPredicted RBP12□□□□□ -0.49
VPS52-217ENST00000478934 NCK2O43639 380 aa12□□□□□ -0.49
VPS52-217ENST00000478934 MATR3P43243 847 aaKnown RBP eCLIP12□□□□□ -0.49
VPS52-217ENST00000478934 PSMC6P62333 389 aa12□□□□□ -0.49
VPS52-217ENST00000478934 FAM193AP78312 1265 aa12□□□□□ -0.49
VPS52-217ENST00000478934 KRT83P78385 493 aa12□□□□□ -0.49
VPS52-217ENST00000478934 USH1GQ495M9 461 aa12□□□□□ -0.49
VPS52-217ENST00000478934 FOXR1Q6PIV2 292 aa12□□□□□ -0.49
VPS52-217ENST00000478934 SIAH1Q8IUQ4 282 aa12□□□□□ -0.49
VPS52-217ENST00000478934 FAM114A1Q8IWE2 563 aa12□□□□□ -0.49
VPS52-217ENST00000478934 CAGE1Q8TC20 777 aa12□□□□□ -0.49
VPS52-217ENST00000478934 CUL5Q93034 780 aa12□□□□□ -0.49
VPS52-217ENST00000478934 MYO1AQ9UBC5 1043 aa12□□□□□ -0.49
VPS52-217ENST00000478934 PCDHA1Q9Y5I3 950 aa12□□□□□ -0.49
VPS52-217ENST00000478934 EIF3CLB5ME19 914 aaKnown RBP11.99□□□□□ -0.49
VPS52-217ENST00000478934 CYLC1P35663 651 aaPredicted RBP11.99□□□□□ -0.49
VPS52-217ENST00000478934 CRKP46108 304 aa11.99□□□□□ -0.49
VPS52-217ENST00000478934 DNA2P51530 1060 aa11.99□□□□□ -0.49
VPS52-217ENST00000478934 GFPT1Q06210 699 aaPredicted RBP11.99□□□□□ -0.49
VPS52-217ENST00000478934 EHHADHQ08426 723 aa11.99□□□□□ -0.49
VPS52-217ENST00000478934 PDIA5Q14554 519 aa11.99□□□□□ -0.49
VPS52-217ENST00000478934 SEPT2Q15019 361 aa11.99□□□□□ -0.49
VPS52-217ENST00000478934 EZH2Q15910 746 aaKnown RBP11.99□□□□□ -0.49
VPS52-217ENST00000478934 COG1Q8WTW3 980 aa11.99□□□□□ -0.49
VPS52-217ENST00000478934 EIF3CQ99613 913 aaKnown RBP11.99□□□□□ -0.49
VPS52-217ENST00000478934 PANK4Q9NVE7 773 aa11.99□□□□□ -0.49
VPS52-217ENST00000478934 STK17AQ9UEE5 414 aa11.99□□□□□ -0.49
VPS52-217ENST00000478934 PLIN4Q96Q06 1357 aa11.99□□□□□ -0.49
VPS52-217ENST00000478934 FAM170AA1A519 330 aa11.99□□□□□ -0.49
VPS52-217ENST00000478934 POTEFA5A3E0 1075 aa11.99□□□□□ -0.49
VPS52-217ENST00000478934 TRAF5O00463 557 aa11.99□□□□□ -0.49
VPS52-217ENST00000478934 KRT86O43790 486 aa11.99□□□□□ -0.49
VPS52-217ENST00000478934 MED24O75448 989 aa11.99□□□□□ -0.49
VPS52-217ENST00000478934 ERLIN1O75477 346 aa11.99□□□□□ -0.49
VPS52-217ENST00000478934 POTEIP0CG38 1075 aa11.99□□□□□ -0.49
VPS52-217ENST00000478934 POTEGQ6S5H5 508 aa11.99□□□□□ -0.49
VPS52-217ENST00000478934 POTEEQ6S8J3 1075 aa11.99□□□□□ -0.49
VPS52-217ENST00000478934 COL23A1Q86Y22 540 aaPredicted RBP11.99□□□□□ -0.49
VPS52-217ENST00000478934 DNAAF5Q86Y56 855 aa11.99□□□□□ -0.49
VPS52-217ENST00000478934 GUF1Q8N442 669 aaKnown RBP11.99□□□□□ -0.49
VPS52-217ENST00000478934 ZNF622Q969S3 477 aaKnown RBP eCLIP11.99□□□□□ -0.498e-7■□□□□ 10.9
VPS52-217ENST00000478934 TEKT1Q969V4 418 aa11.99□□□□□ -0.49
VPS52-217ENST00000478934 NUP58Q9BVL2 599 aa11.99□□□□□ -0.49
VPS52-217ENST00000478934 PCDHA13Q9Y5I0 950 aa11.99□□□□□ -0.49
VPS52-217ENST00000478934 UBR3Q6ZT12 1888 aa11.98□□□□□ -0.49
VPS52-217ENST00000478934 PVALEFA0A1B0GWK0 134 aa11.98□□□□□ -0.49
VPS52-217ENST00000478934 ONECUT3O60422 494 aaPredicted RBP11.98□□□□□ -0.49
VPS52-217ENST00000478934 SLC1A4P43007 532 aa11.98□□□□□ -0.49
VPS52-217ENST00000478934 CASP5P51878 434 aa11.98□□□□□ -0.49
VPS52-217ENST00000478934 KIF11P52732 1056 aa11.98□□□□□ -0.49
VPS52-217ENST00000478934 IRX5P78411 483 aaPredicted RBP11.98□□□□□ -0.49
VPS52-217ENST00000478934 ARID5AQ03989 594 aa11.98□□□□□ -0.49
VPS52-217ENST00000478934 ZSCAN26Q16670 478 aa11.98□□□□□ -0.49
VPS52-217ENST00000478934 PAPD7Q5XG87 772 aaKnown RBP11.98□□□□□ -0.49
VPS52-217ENST00000478934 PPP4R3AQ6IN85 833 aa11.98□□□□□ -0.49
VPS52-217ENST00000478934 CYP2W1Q8TAV3 490 aa11.98□□□□□ -0.49
VPS52-217ENST00000478934 HDAC7Q8WUI4 952 aa11.98□□□□□ -0.49
VPS52-217ENST00000478934 HNRNPLLQ8WVV9 542 aaKnown RBP11.98□□□□□ -0.49
VPS52-217ENST00000478934 BAP1Q92560 729 aa11.98□□□□□ -0.49
VPS52-217ENST00000478934 QTRT2Q9H974 415 aaKnown RBP11.98□□□□□ -0.49
VPS52-217ENST00000478934 CALCOCO1Q9P1Z2 691 aa11.98□□□□□ -0.49
VPS52-217ENST00000478934 FAM198AQ9UFP1 575 aa11.98□□□□□ -0.49
VPS52-217ENST00000478934 LCMT1Q9UIC8 334 aa11.98□□□□□ -0.49
VPS52-217ENST00000478934 PLAGL2Q9UPG8 496 aa11.98□□□□□ -0.49
VPS52-217ENST00000478934 ATF5Q9Y2D1 282 aaPredicted RBP11.98□□□□□ -0.49
VPS52-217ENST00000478934 A0A0U1RQG5 324 aaPredicted RBP11.98□□□□□ -0.49
VPS52-217ENST00000478934 BUB1O43683 1085 aa11.98□□□□□ -0.49
VPS52-217ENST00000478934 HOXA13P31271 388 aaPredicted RBP11.98□□□□□ -0.49
VPS52-217ENST00000478934 MRPL12P52815 198 aaKnown RBP11.98□□□□□ -0.49
VPS52-217ENST00000478934 KIF5AQ12840 1032 aa11.98□□□□□ -0.49
VPS52-217ENST00000478934 MAN2A1Q16706 1144 aa11.98□□□□□ -0.49
VPS52-217ENST00000478934 MYOCDQ8IZQ8 938 aa11.98□□□□□ -0.49
VPS52-217ENST00000478934 SPICE1Q8N0Z3 855 aa11.98□□□□□ -0.49
VPS52-217ENST00000478934 IFIH1Q9BYX4 1025 aaKnown RBP11.98□□□□□ -0.49
VPS52-217ENST00000478934 IKZF4Q9H2S9 585 aa11.98□□□□□ -0.49
VPS52-217ENST00000478934 ANKRD65E5RJM6 399 aa11.97□□□□□ -0.49
VPS52-217ENST00000478934 IPO7O95373 1038 aaKnown RBP11.97□□□□□ -0.49
VPS52-217ENST00000478934 PLA2G4BP0C869 781 aa11.97□□□□□ -0.49
VPS52-217ENST00000478934 CAPN2P17655 700 aa11.97□□□□□ -0.49
VPS52-217ENST00000478934 VAV2P52735 878 aa11.97□□□□□ -0.49
VPS52-217ENST00000478934 USP14P54578 494 aa11.97□□□□□ -0.49
VPS52-217ENST00000478934 RRP1BQ14684 758 aaKnown RBP11.97□□□□□ -0.49
VPS52-217ENST00000478934 CDC37Q16543 378 aaPredicted RBP11.97□□□□□ -0.49
VPS52-217ENST00000478934 PRR16Q569H4 304 aa11.97□□□□□ -0.49
VPS52-217ENST00000478934 ARSHQ5FYA8 562 aa11.97□□□□□ -0.49
VPS52-217ENST00000478934 HERC4Q5GLZ8 1057 aaPredicted RBP11.97□□□□□ -0.49
VPS52-217ENST00000478934 SLFN13Q68D06 897 aa11.97□□□□□ -0.49
VPS52-217ENST00000478934 NFRKBQ6P4R8 1299 aa11.97□□□□□ -0.49
VPS52-217ENST00000478934 GPBP1Q86WP2 473 aa11.97□□□□□ -0.49
VPS52-217ENST00000478934 RETREG2Q8NC44 543 aa11.97□□□□□ -0.49
VPS52-217ENST00000478934 SECISBP2LQ93073 1101 aaKnown RBP11.97□□□□□ -0.49
VPS52-217ENST00000478934 RAB34Q9BZG1 259 aa11.97□□□□□ -0.49
VPS52-217ENST00000478934 DEF6Q9H4E7 631 aa11.97□□□□□ -0.49
VPS52-217ENST00000478934 MEIS2O14770 477 aa11.97□□□□□ -0.49
VPS52-217ENST00000478934 AKR1B10O60218 316 aa11.97□□□□□ -0.49
VPS52-217ENST00000478934 TLR2O60603 784 aa11.97□□□□□ -0.49
VPS52-217ENST00000478934 NOL4O94818 638 aa11.97□□□□□ -0.49
VPS52-217ENST00000478934 HLA-DOAP06340 250 aa11.97□□□□□ -0.49
VPS52-217ENST00000478934 HSPA1LP34931 641 aa11.97□□□□□ -0.49
Retrieved 100 of 20,778 RNA–protein pairs in 17.7 ms