RNA–Protein interactions for RNA: ENST00000473405.1

CCDC88B-206, Transcript of coiled-coil domain containing 88B, humanhuman

TSL 1 (best)

Gene CCDC88B, Length 783 nt, Biotype processed transcript, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC88B-206ENST00000473405 GTF2IRD1Q9UHL9 959 aa21.74■■□□□ 1.07
CCDC88B-206ENST00000473405 SORBS3O60504 671 aa21.73■■□□□ 1.07
CCDC88B-206ENST00000473405 PLEKHA8P1O95397 391 aa21.73■■□□□ 1.07
CCDC88B-206ENST00000473405 GGPS1O95749 300 aa21.73■■□□□ 1.07
CCDC88B-206ENST00000473405 KIF5BP33176 963 aa21.73■■□□□ 1.07
CCDC88B-206ENST00000473405 PSEN2P49810 448 aa21.73■■□□□ 1.07
CCDC88B-206ENST00000473405 MFSD10Q14728 455 aa21.73■■□□□ 1.07
CCDC88B-206ENST00000473405 BMP2KLQ5H9B9 411 aa21.73■■□□□ 1.07
CCDC88B-206ENST00000473405 CELF3Q5SZQ8 465 aaKnown RBP21.73■■□□□ 1.07
CCDC88B-206ENST00000473405 CREB3L3Q68CJ9 461 aa21.73■■□□□ 1.07
CCDC88B-206ENST00000473405 USP38Q8NB14 1042 aa21.73■■□□□ 1.07
CCDC88B-206ENST00000473405 ANO2Q9NQ90 1003 aa21.73■■□□□ 1.07
CCDC88B-206ENST00000473405 HDAC6Q9UBN7 1215 aa21.73■■□□□ 1.07
CCDC88B-206ENST00000473405 TGFB3P10600 412 aa21.72■■□□□ 1.07
CCDC88B-206ENST00000473405 MYOGP15173 224 aa21.72■■□□□ 1.07
CCDC88B-206ENST00000473405 ATP2A2P16615 1042 aaKnown RBP21.72■■□□□ 1.07
CCDC88B-206ENST00000473405 SMARCA1P28370 1054 aa21.72■■□□□ 1.07
CCDC88B-206ENST00000473405 MRPS9P82933 396 aaKnown RBP21.72■■□□□ 1.07
CCDC88B-206ENST00000473405 KIAA0753Q2KHM9 967 aa21.72■■□□□ 1.07
CCDC88B-206ENST00000473405 RETREG2Q8NC44 543 aa21.72■■□□□ 1.07
CCDC88B-206ENST00000473405 CAGE1Q8TC20 777 aa21.72■■□□□ 1.07
CCDC88B-206ENST00000473405 RRP36Q96EU6 259 aaKnown RBP21.72■■□□□ 1.07
CCDC88B-206ENST00000473405 TMEM87BQ96K49 555 aa21.72■■□□□ 1.07
CCDC88B-206ENST00000473405 ALG1Q9BT22 464 aa21.72■■□□□ 1.07
CCDC88B-206ENST00000473405 KATNAL1Q9BW62 490 aa21.72■■□□□ 1.07
CCDC88B-206ENST00000473405 COL25A1Q9BXS0 654 aaPredicted RBP21.72■■□□□ 1.07
CCDC88B-206ENST00000473405 RXRAP19793 462 aa21.71■■□□□ 1.07
CCDC88B-206ENST00000473405 RBL2Q08999 1139 aa21.71■■□□□ 1.07
CCDC88B-206ENST00000473405 GPNMBQ14956 572 aa21.71■■□□□ 1.07
CCDC88B-206ENST00000473405 CENPQQ7L2Z9 268 aaPredicted RBP21.71■■□□□ 1.07
CCDC88B-206ENST00000473405 SRBD1Q8N5C6 995 aaKnown RBP21.71■■□□□ 1.07
CCDC88B-206ENST00000473405 CCDC155Q8N6L0 562 aa21.71■■□□□ 1.07
CCDC88B-206ENST00000473405 C7orf31Q8N865 590 aa21.71■■□□□ 1.07
CCDC88B-206ENST00000473405 AFAP1L1Q8TED9 768 aa21.71■■□□□ 1.07
CCDC88B-206ENST00000473405 SPATA33Q96N06 139 aa21.71■■□□□ 1.07
CCDC88B-206ENST00000473405 INPP4AQ96PE3 977 aaPredicted RBP21.71■■□□□ 1.07
CCDC88B-206ENST00000473405 BCAS3Q9H6U6 928 aa21.71■■□□□ 1.07
CCDC88B-206ENST00000473405 SLC28A3Q9HAS3 691 aa21.71■■□□□ 1.07
CCDC88B-206ENST00000473405 PCDHA11Q9Y5I1 949 aa21.71■■□□□ 1.07
CCDC88B-206ENST00000473405 MEIS2O14770 477 aa21.7■■□□□ 1.06
CCDC88B-206ENST00000473405 PPFIA4O75335 1185 aa21.7■■□□□ 1.06
CCDC88B-206ENST00000473405 LIFRP42702 1097 aa21.7■■□□□ 1.06
CCDC88B-206ENST00000473405 SEMA3FQ13275 785 aa21.7■■□□□ 1.06
CCDC88B-206ENST00000473405 ADGRE1Q14246 886 aa21.7■■□□□ 1.06
CCDC88B-206ENST00000473405 USP17L6PQ6QN14 398 aa21.7■■□□□ 1.06
CCDC88B-206ENST00000473405 NFXL1Q6ZNB6 911 aa21.7■■□□□ 1.06
CCDC88B-206ENST00000473405 CMTR1Q8N1G2 835 aaKnown RBP21.7■■□□□ 1.06
CCDC88B-206ENST00000473405 LZTS2Q9BRK4 669 aa21.7■■□□□ 1.06
CCDC88B-206ENST00000473405 C16orf70Q9BSU1 422 aa21.7■■□□□ 1.06
CCDC88B-206ENST00000473405 LRRC2Q9BYS8 371 aa21.7■■□□□ 1.06
CCDC88B-206ENST00000473405 CCDC69A6NI79 296 aa21.69■■□□□ 1.06
CCDC88B-206ENST00000473405 PIK3CDO00329 1044 aa21.69■■□□□ 1.06
CCDC88B-206ENST00000473405 ACTN1P12814 892 aa21.69■■□□□ 1.06
CCDC88B-206ENST00000473405 SELPP16109 830 aa21.69■■□□□ 1.06
CCDC88B-206ENST00000473405 HIC1Q14526 733 aa21.69■■□□□ 1.06
CCDC88B-206ENST00000473405 LRRC8DQ7L1W4 858 aa21.69■■□□□ 1.06
CCDC88B-206ENST00000473405 RAB11FIP4Q86YS3 637 aa21.69■■□□□ 1.06
CCDC88B-206ENST00000473405 TMTC2Q8N394 836 aa21.69■■□□□ 1.06
CCDC88B-206ENST00000473405 WNT8BQ93098 351 aa21.69■■□□□ 1.06
CCDC88B-206ENST00000473405 GAS2L1Q99501 681 aaPredicted RBP21.69■■□□□ 1.06
CCDC88B-206ENST00000473405 SEC63Q9UGP8 760 aaKnown RBP21.69■■□□□ 1.06
CCDC88B-206ENST00000473405 RBAK-RBAKDNI3L0D1 243 aa21.68■■□□□ 1.06
CCDC88B-206ENST00000473405 STAM2O75886 525 aa21.68■■□□□ 1.06
CCDC88B-206ENST00000473405 CKBP12277 381 aa21.68■■□□□ 1.06
CCDC88B-206ENST00000473405 ICAM3P32942 547 aa21.68■■□□□ 1.06
CCDC88B-206ENST00000473405 GNAQP50148 359 aa21.68■■□□□ 1.06
CCDC88B-206ENST00000473405 ZNF200P98182 395 aaPredicted RBP21.68■■□□□ 1.06
CCDC88B-206ENST00000473405 TRIM71Q2Q1W2 868 aaKnown RBP21.68■■□□□ 1.06
CCDC88B-206ENST00000473405 GNPTABQ3T906 1256 aa21.68■■□□□ 1.06
CCDC88B-206ENST00000473405 PPP2R2DQ66LE6 453 aa21.68■■□□□ 1.06
CCDC88B-206ENST00000473405 SLC9A7Q96T83 725 aa21.68■■□□□ 1.06
CCDC88B-206ENST00000473405 FTOQ9C0B1 505 aaKnown RBP eCLIP21.68■■□□□ 1.06
CCDC88B-206ENST00000473405 COL4A4P53420 1690 aaPredicted RBP21.68■■□□□ 1.06
CCDC88B-206ENST00000473405 SPATA31C2B4DYI2 1134 aa21.67■■□□□ 1.06
CCDC88B-206ENST00000473405 BAIAP3O94812 1187 aa21.67■■□□□ 1.06
CCDC88B-206ENST00000473405 CALM1P0DP23 149 aa21.67■■□□□ 1.06
CCDC88B-206ENST00000473405 CALM2P0DP24 149 aa21.67■■□□□ 1.06
CCDC88B-206ENST00000473405 CALM3P0DP25 149 aa21.67■■□□□ 1.06
CCDC88B-206ENST00000473405 PTK7Q13308 1070 aa21.67■■□□□ 1.06
CCDC88B-206ENST00000473405 PCNX4Q63HM2 1172 aa21.67■■□□□ 1.06
CCDC88B-206ENST00000473405 TRAF7Q6Q0C0 670 aa21.67■■□□□ 1.06
CCDC88B-206ENST00000473405 SGMS1Q86VZ5 419 aa21.67■■□□□ 1.06
CCDC88B-206ENST00000473405 SMARCC2Q8TAQ2 1214 aa21.67■■□□□ 1.06
CCDC88B-206ENST00000473405 MLXIPQ9HAP2 919 aa21.67■■□□□ 1.06
CCDC88B-206ENST00000473405 SLC12A7Q9Y666 1083 aa21.67■■□□□ 1.06
CCDC88B-206ENST00000473405 NBNO60934 754 aa21.66■■□□□ 1.06
CCDC88B-206ENST00000473405 CXCL10P02778 98 aa21.66■■□□□ 1.06
CCDC88B-206ENST00000473405 LGALS2P05162 132 aa21.66■■□□□ 1.06
CCDC88B-206ENST00000473405 CA3P07451 260 aa21.66■■□□□ 1.06
CCDC88B-206ENST00000473405 HOXC8P31273 242 aa21.66■■□□□ 1.06
CCDC88B-206ENST00000473405 METTL7BQ6UX53 244 aa21.66■■□□□ 1.06
CCDC88B-206ENST00000473405 TMTC3Q6ZXV5 915 aa21.66■■□□□ 1.06
CCDC88B-206ENST00000473405 PHOSPHO2Q8TCD6 241 aa21.66■■□□□ 1.06
CCDC88B-206ENST00000473405 RTEL1Q9NZ71 1219 aa21.66■■□□□ 1.06
CCDC88B-206ENST00000473405 MICAL3Q7RTP6 2002 aa21.66■■□□□ 1.06
CCDC88B-206ENST00000473405 hCG_1642624A0A1W2PR95 340 aa21.65■■□□□ 1.06
CCDC88B-206ENST00000473405 FIBPO43427 364 aa21.65■■□□□ 1.06
CCDC88B-206ENST00000473405 MBTPS1Q14703 1052 aa21.65■■□□□ 1.06
CCDC88B-206ENST00000473405 TCTN1Q2MV58 587 aa21.65■■□□□ 1.06
CCDC88B-206ENST00000473405 MICU3Q86XE3 530 aa21.65■■□□□ 1.06
Retrieved 100 of 20,778 RNA–protein pairs in 15.9 ms