RNA–Protein interactions for RNA: ENST00000472524.1

CCDC88B-205, Transcript of coiled-coil domain containing 88B, humanhuman

TSL 2

Gene CCDC88B, Length 779 nt, Biotype processed transcript, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC88B-205ENST00000472524 SRBD1Q8N5C6 995 aaKnown RBP18.15■□□□□ 0.5
CCDC88B-205ENST00000472524 LZTS2Q9BRK4 669 aa18.15■□□□□ 0.5
CCDC88B-205ENST00000472524 NOD1Q9Y239 953 aa18.15■□□□□ 0.5
CCDC88B-205ENST00000472524 TTC28Q96AY4 2481 aa18.15■□□□□ 0.5
CCDC88B-205ENST00000472524 KAT6AQ92794 2004 aa18.15■□□□□ 0.5
CCDC88B-205ENST00000472524 CALM1P0DP23 149 aa18.14■□□□□ 0.49
CCDC88B-205ENST00000472524 CALM2P0DP24 149 aa18.14■□□□□ 0.49
CCDC88B-205ENST00000472524 CALM3P0DP25 149 aa18.14■□□□□ 0.49
CCDC88B-205ENST00000472524 ATP2A2P16615 1042 aaKnown RBP18.14■□□□□ 0.49
CCDC88B-205ENST00000472524 CASTP20810 708 aaKnown RBP18.14■□□□□ 0.49
CCDC88B-205ENST00000472524 LAMC2Q13753 1193 aa18.14■□□□□ 0.49
CCDC88B-205ENST00000472524 DGKDQ16760 1214 aa18.14■□□□□ 0.49
CCDC88B-205ENST00000472524 MICU3Q86XE3 530 aa18.14■□□□□ 0.49
CCDC88B-205ENST00000472524 TCEANC2Q96MN5 208 aa18.14■□□□□ 0.49
CCDC88B-205ENST00000472524 NEK1Q96PY6 1258 aa18.14■□□□□ 0.49
CCDC88B-205ENST00000472524 hCG_1642624A0A1W2PR95 340 aa18.13■□□□□ 0.49
CCDC88B-205ENST00000472524 GGPS1O95749 300 aa18.13■□□□□ 0.49
CCDC88B-205ENST00000472524 PFKMP08237 780 aa18.13■□□□□ 0.49
CCDC88B-205ENST00000472524 ZNF286BP0CG31 522 aa18.13■□□□□ 0.49
CCDC88B-205ENST00000472524 SMARCA1P28370 1054 aa18.13■□□□□ 0.49
CCDC88B-205ENST00000472524 PTPN11Q06124 597 aaPredicted RBP18.13■□□□□ 0.49
CCDC88B-205ENST00000472524 PPP2R2DQ66LE6 453 aa18.13■□□□□ 0.49
CCDC88B-205ENST00000472524 KCNV1Q6PIU1 500 aa18.13■□□□□ 0.49
CCDC88B-205ENST00000472524 USP17L6PQ6QN14 398 aa18.13■□□□□ 0.49
CCDC88B-205ENST00000472524 CCDC82Q8N4S0 544 aa18.13■□□□□ 0.49
CCDC88B-205ENST00000472524 PPTC7Q8NI37 304 aa18.13■□□□□ 0.49
CCDC88B-205ENST00000472524 SMARCC2Q8TAQ2 1214 aa18.13■□□□□ 0.49
CCDC88B-205ENST00000472524 KAT2BQ92831 832 aa18.13■□□□□ 0.49
CCDC88B-205ENST00000472524 GPKOWQ92917 476 aaPredicted RBP eCLIP18.13■□□□□ 0.49
CCDC88B-205ENST00000472524 CUL5Q93034 780 aa18.13■□□□□ 0.49
CCDC88B-205ENST00000472524 EMID1Q96A84 441 aaPredicted RBP18.13■□□□□ 0.49
CCDC88B-205ENST00000472524 THEGQ9P2T0 379 aa18.13■□□□□ 0.49
CCDC88B-205ENST00000472524 PCDHA11Q9Y5I1 949 aa18.13■□□□□ 0.49
CCDC88B-205ENST00000472524 UBA1P22314 1058 aaKnown RBP18.12■□□□□ 0.49
CCDC88B-205ENST00000472524 PSEN2P49810 448 aa18.12■□□□□ 0.49
CCDC88B-205ENST00000472524 PTGISQ16647 500 aa18.12■□□□□ 0.49
CCDC88B-205ENST00000472524 SYNE3Q6ZMZ3 975 aa18.12■□□□□ 0.49
CCDC88B-205ENST00000472524 SGMS1Q86VZ5 419 aa18.12■□□□□ 0.49
CCDC88B-205ENST00000472524 RASEFQ8IZ41 740 aa18.12■□□□□ 0.49
CCDC88B-205ENST00000472524 ATXN2LQ8WWM7 1075 aaKnown RBP18.12■□□□□ 0.49
CCDC88B-205ENST00000472524 SPATA33Q96N06 139 aa18.12■□□□□ 0.49
CCDC88B-205ENST00000472524 ASB2Q96Q27 587 aa18.12■□□□□ 0.49
CCDC88B-205ENST00000472524 ALG1Q9BT22 464 aa18.12■□□□□ 0.49
CCDC88B-205ENST00000472524 FRMPD4Q14CM0 1322 aa18.12■□□□□ 0.49
CCDC88B-205ENST00000472524 TNFRSF10AO00220 468 aa18.11■□□□□ 0.49
CCDC88B-205ENST00000472524 MRPS9P82933 396 aaKnown RBP18.11■□□□□ 0.49
CCDC88B-205ENST00000472524 SP2Q02086 613 aa18.11■□□□□ 0.49
CCDC88B-205ENST00000472524 ADCK5Q3MIX3 580 aa18.11■□□□□ 0.49
CCDC88B-205ENST00000472524 CELF3Q5SZQ8 465 aaKnown RBP18.11■□□□□ 0.49
CCDC88B-205ENST00000472524 MYSM1Q5VVJ2 828 aa18.11■□□□□ 0.49
CCDC88B-205ENST00000472524 GDF6Q6KF10 455 aaPredicted RBP18.11■□□□□ 0.49
CCDC88B-205ENST00000472524 TMTC3Q6ZXV5 915 aa18.11■□□□□ 0.49
CCDC88B-205ENST00000472524 FANCBQ8NB91 859 aa18.11■□□□□ 0.49
CCDC88B-205ENST00000472524 RETREG2Q8NC44 543 aa18.11■□□□□ 0.49
CCDC88B-205ENST00000472524 KATNAL1Q9BW62 490 aa18.11■□□□□ 0.49
CCDC88B-205ENST00000472524 MEIS2O14770 477 aa18.1■□□□□ 0.49
CCDC88B-205ENST00000472524 IQCF3P0C7M6 154 aa18.1■□□□□ 0.49
CCDC88B-205ENST00000472524 MFSD10Q14728 455 aa18.1■□□□□ 0.49
CCDC88B-205ENST00000472524 HSDL1Q3SXM5 330 aa18.1■□□□□ 0.49
CCDC88B-205ENST00000472524 GNPTABQ3T906 1256 aa18.1■□□□□ 0.49
CCDC88B-205ENST00000472524 APOA5Q6Q788 366 aa18.1■□□□□ 0.49
CCDC88B-205ENST00000472524 DHX32Q7L7V1 743 aaKnown RBP18.1■□□□□ 0.49
CCDC88B-205ENST00000472524 SESTD1Q86VW0 696 aa18.1■□□□□ 0.49
CCDC88B-205ENST00000472524 MICALL1Q8N3F8 863 aa18.1■□□□□ 0.49
CCDC88B-205ENST00000472524 MLXIPQ9HAP2 919 aa18.1■□□□□ 0.49
CCDC88B-205ENST00000472524 RTEL1Q9NZ71 1219 aa18.1■□□□□ 0.49
CCDC88B-205ENST00000472524 HDAC6Q9UBN7 1215 aa18.1■□□□□ 0.49
CCDC88B-205ENST00000472524 XIRP2A4UGR9 3374 aa18.1■□□□□ 0.49
CCDC88B-205ENST00000472524 RFXAPO00287 272 aa18.09■□□□□ 0.49
CCDC88B-205ENST00000472524 PITPNM1O00562 1244 aa18.09■□□□□ 0.49
CCDC88B-205ENST00000472524 F2P00734 622 aa18.09■□□□□ 0.49
CCDC88B-205ENST00000472524 CA3P07451 260 aa18.09■□□□□ 0.49
CCDC88B-205ENST00000472524 TGFB3P10600 412 aa18.09■□□□□ 0.49
CCDC88B-205ENST00000472524 MRPS5P82675 430 aaKnown RBP18.09■□□□□ 0.49
CCDC88B-205ENST00000472524 EXOSC10Q01780 885 aaKnown RBP18.09■□□□□ 0.49
CCDC88B-205ENST00000472524 BFSP2Q13515 415 aa18.09■□□□□ 0.49
CCDC88B-205ENST00000472524 KRT32Q14532 448 aa18.09■□□□□ 0.49
CCDC88B-205ENST00000472524 KIAA0753Q2KHM9 967 aa18.09■□□□□ 0.49
CCDC88B-205ENST00000472524 HEATR3Q7Z4Q2 680 aa18.09■□□□□ 0.49
CCDC88B-205ENST00000472524 C7orf31Q8N865 590 aa18.09■□□□□ 0.49
CCDC88B-205ENST00000472524 GTF2IRD1Q9UHL9 959 aa18.09■□□□□ 0.49
CCDC88B-205ENST00000472524 PTPRSQ13332 1948 aa18.09■□□□□ 0.49
CCDC88B-205ENST00000472524 CNTNAP5Q8WYK1 1306 aa18.08■□□□□ 0.49
CCDC88B-205ENST00000472524 PIK3CDO00329 1044 aa18.08■□□□□ 0.48
CCDC88B-205ENST00000472524 STAM2O75886 525 aa18.08■□□□□ 0.48
CCDC88B-205ENST00000472524 ARHGEF15O94989 841 aa18.08■□□□□ 0.48
CCDC88B-205ENST00000472524 ACTN1P12814 892 aa18.08■□□□□ 0.48
CCDC88B-205ENST00000472524 RFC2P35250 354 aa18.08■□□□□ 0.48
CCDC88B-205ENST00000472524 SEMA3FQ13275 785 aa18.08■□□□□ 0.48
CCDC88B-205ENST00000472524 UBE2SQ16763 222 aa18.08■□□□□ 0.48
CCDC88B-205ENST00000472524 RTN1Q16799 776 aa18.08■□□□□ 0.48
CCDC88B-205ENST00000472524 TSGA10IPQ3SY00 556 aa18.08■□□□□ 0.48
CCDC88B-205ENST00000472524 CCDC155Q8N6L0 562 aa18.08■□□□□ 0.48
CCDC88B-205ENST00000472524 ADAMTS19Q8TE59 1207 aa18.08■□□□□ 0.48
CCDC88B-205ENST00000472524 INPP4AQ96PE3 977 aaPredicted RBP18.08■□□□□ 0.48
CCDC88B-205ENST00000472524 CTAGE1Q96RT6 745 aa18.08■□□□□ 0.48
CCDC88B-205ENST00000472524 FTOQ9C0B1 505 aaKnown RBP eCLIP18.08■□□□□ 0.48
CCDC88B-205ENST00000472524 BCAS3Q9H6U6 928 aa18.08■□□□□ 0.48
CCDC88B-205ENST00000472524 PSTPIP2Q9H939 334 aa18.08■□□□□ 0.48
CCDC88B-205ENST00000472524 CERS4Q9HA82 394 aa18.08■□□□□ 0.48
Retrieved 100 of 20,778 RNA–protein pairs in 20.5 ms