RNA–Protein interactions for RNA: ENST00000429102.6

CDH3-202, Transcript of cadherin 3, humanhuman

TSL 1 (best) BASIC

Gene CDH3, Length 3,611 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Endoplasmic reticulum, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CDH3-202ENST00000429102 A0A087X0T9 212 aa13.76□□□□□ -0.21
CDH3-202ENST00000429102 FAM228BP0C875 321 aa13.76□□□□□ -0.21
CDH3-202ENST00000429102 ABCB4P21439 1286 aa13.76□□□□□ -0.21
CDH3-202ENST00000429102 RCAN1P53805 252 aa13.76□□□□□ -0.21
CDH3-202ENST00000429102 CFAP221Q4G0U5 840 aa13.76□□□□□ -0.21
CDH3-202ENST00000429102 SFMBT2Q5VUG0 894 aa13.76□□□□□ -0.21
CDH3-202ENST00000429102 GJB7Q6PEY0 223 aa13.76□□□□□ -0.21
CDH3-202ENST00000429102 RDH13Q8NBN7 331 aa13.76□□□□□ -0.21
CDH3-202ENST00000429102 LINC00116Q8NCU8 138 aa13.76□□□□□ -0.21
CDH3-202ENST00000429102 CCSER1Q9C0I3 900 aa13.76□□□□□ -0.21
CDH3-202ENST00000429102 DDX47Q9H0S4 455 aaKnown RBP13.76□□□□□ -0.21
CDH3-202ENST00000429102 ZNF219Q9P2Y4 722 aaPredicted RBP13.76□□□□□ -0.21
CDH3-202ENST00000429102 PLAGL2Q9UPG8 496 aa13.76□□□□□ -0.21
CDH3-202ENST00000429102 BCL9O00512 1426 aa13.76□□□□□ -0.21
CDH3-202ENST00000429102 RASA1P20936 1047 aa13.76□□□□□ -0.21
CDH3-202ENST00000429102 TMOD1P28289 359 aa13.76□□□□□ -0.21
CDH3-202ENST00000429102 SCNN1DP51172 638 aa13.76□□□□□ -0.21
CDH3-202ENST00000429102 KCNB1Q14721 858 aa13.76□□□□□ -0.21
CDH3-202ENST00000429102 GRM4Q14833 912 aa13.76□□□□□ -0.21
CDH3-202ENST00000429102 MEA1Q16626 185 aa13.76□□□□□ -0.21
CDH3-202ENST00000429102 SLC9C1Q4G0N8 1177 aa13.76□□□□□ -0.21
CDH3-202ENST00000429102 FAM83BQ5T0W9 1011 aa13.76□□□□□ -0.21
CDH3-202ENST00000429102 TTYH3Q9C0H2 523 aa13.76□□□□□ -0.21
CDH3-202ENST00000429102 OPA1O60313 960 aa13.76□□□□□ -0.21
CDH3-202ENST00000429102 TUBBP07437 444 aa13.76□□□□□ -0.21
CDH3-202ENST00000429102 CACNB3P54284 484 aa13.76□□□□□ -0.21
CDH3-202ENST00000429102 MAN2A1Q16706 1144 aa13.76□□□□□ -0.21
CDH3-202ENST00000429102 DPP8Q6V1X1 898 aaPredicted RBP13.76□□□□□ -0.21
CDH3-202ENST00000429102 KRT25Q7Z3Z0 450 aa13.76□□□□□ -0.21
CDH3-202ENST00000429102 DGKHQ86XP1 1220 aa13.76□□□□□ -0.21
CDH3-202ENST00000429102 CCDC113Q9H0I3 377 aa13.76□□□□□ -0.21
CDH3-202ENST00000429102 BLOC1S4Q9NUP1 217 aa13.76□□□□□ -0.21
CDH3-202ENST00000429102 PANK4Q9NVE7 773 aa13.76□□□□□ -0.21
CDH3-202ENST00000429102 TNS2Q63HR2 1409 aa13.76□□□□□ -0.21
CDH3-202ENST00000429102 POTEB3A0JP26 581 aa13.75□□□□□ -0.21
CDH3-202ENST00000429102 POTECB2RU33 542 aa13.75□□□□□ -0.21
CDH3-202ENST00000429102 PPFIA1Q13136 1202 aa13.75□□□□□ -0.21
CDH3-202ENST00000429102 KLHDC7AQ5VTJ3 777 aa13.75□□□□□ -0.21
CDH3-202ENST00000429102 POTEBQ6S5H4 581 aa13.75□□□□□ -0.21
CDH3-202ENST00000429102 KAT2BQ92831 832 aa13.75□□□□□ -0.21
CDH3-202ENST00000429102 PCDHB13Q9Y5F0 798 aa13.75□□□□□ -0.21
CDH3-202ENST00000429102 TUBB4BP68371 445 aa13.75□□□□□ -0.21
CDH3-202ENST00000429102 TCP10Q12799 353 aa13.75□□□□□ -0.21
CDH3-202ENST00000429102 PABPC4Q13310 644 aaKnown RBP eCLIP13.75□□□□□ -0.21
CDH3-202ENST00000429102 MAEAQ7L5Y9 396 aa13.75□□□□□ -0.21
CDH3-202ENST00000429102 MYOCDQ8IZQ8 938 aa13.75□□□□□ -0.21
CDH3-202ENST00000429102 TSGA10Q9BZW7 698 aa13.75□□□□□ -0.21
CDH3-202ENST00000429102 BMP2KQ9NSY1 1161 aaPredicted RBP13.75□□□□□ -0.21
CDH3-202ENST00000429102 UFL1O94874 794 aa13.75□□□□□ -0.21
CDH3-202ENST00000429102 TCP1P17987 556 aaKnown RBP13.75□□□□□ -0.21
CDH3-202ENST00000429102 SLC9A1P19634 815 aa13.75□□□□□ -0.21
CDH3-202ENST00000429102 NBPF9Q3BBW0 867 aa13.75□□□□□ -0.21
CDH3-202ENST00000429102 USH1GQ495M9 461 aa13.75□□□□□ -0.21
CDH3-202ENST00000429102 ICE2Q659A1 982 aa13.75□□□□□ -0.21
CDH3-202ENST00000429102 PNMA5Q96PV4 448 aa13.75□□□□□ -0.21
CDH3-202ENST00000429102 FLT1P17948 1338 aa13.74□□□□□ -0.21
CDH3-202ENST00000429102 LOC102724159A0A0B4J2E5 919 aa13.74□□□□□ -0.21
CDH3-202ENST00000429102 FECHP22830 423 aa13.74□□□□□ -0.21
CDH3-202ENST00000429102 ADAM9Q13443 819 aa13.74□□□□□ -0.21
CDH3-202ENST00000429102 PWP2Q15269 919 aaKnown RBP13.74□□□□□ -0.21
CDH3-202ENST00000429102 AENQ8WTP8 325 aaKnown RBP13.74□□□□□ -0.21
CDH3-202ENST00000429102 MTA3Q9BTC8 594 aa13.74□□□□□ -0.21
CDH3-202ENST00000429102 TAF1P21675 1872 aa13.74□□□□□ -0.21
CDH3-202ENST00000429102 TMEM110-MUSTN1A8MSY1 372 aa13.74□□□□□ -0.21
CDH3-202ENST00000429102 FAM26FQ5R3K3 315 aa13.74□□□□□ -0.21
CDH3-202ENST00000429102 MFSD14BQ5SR56 506 aa13.74□□□□□ -0.21
CDH3-202ENST00000429102 TPTE2Q6XPS3 522 aa13.74□□□□□ -0.21
CDH3-202ENST00000429102 GPBP1Q86WP2 473 aa13.74□□□□□ -0.21
CDH3-202ENST00000429102 PCDHA12Q9UN75 941 aa13.74□□□□□ -0.21
CDH3-202ENST00000429102 RTCBQ9Y3I0 505 aaKnown RBP13.74□□□□□ -0.21
CDH3-202ENST00000429102 ZC3H4Q9UPT8 1303 aaKnown RBP13.74□□□□□ -0.21
CDH3-202ENST00000429102 GOLGA6L10A6NI86 522 aa13.73□□□□□ -0.21
CDH3-202ENST00000429102 RAD51CO43502 376 aa13.73□□□□□ -0.21
CDH3-202ENST00000429102 EPHB4P54760 987 aa13.73□□□□□ -0.21
CDH3-202ENST00000429102 KCNMA1Q12791 1236 aa13.73□□□□□ -0.21
CDH3-202ENST00000429102 SHROOM1Q2M3G4 852 aaPredicted RBP13.73□□□□□ -0.21
CDH3-202ENST00000429102 CCDC84Q86UT8 332 aaPredicted RBP13.73□□□□□ -0.21
CDH3-202ENST00000429102 AMIGO3Q86WK7 504 aa13.73□□□□□ -0.21
CDH3-202ENST00000429102 ZSCAN29Q8IWY8 852 aaPredicted RBP13.73□□□□□ -0.21
CDH3-202ENST00000429102 IFT20Q8IY31 132 aa13.73□□□□□ -0.21
CDH3-202ENST00000429102 CELF4Q9BZC1 486 aaKnown RBP13.73□□□□□ -0.21
CDH3-202ENST00000429102 MYH13Q9UKX3 1938 aa13.73□□□□□ -0.21
CDH3-202ENST00000429102 CHMP2AO43633 222 aa13.73□□□□□ -0.21
CDH3-202ENST00000429102 ADCY7P51828 1080 aa13.73□□□□□ -0.21
CDH3-202ENST00000429102 CASKIN2Q8WXE0 1202 aa13.73□□□□□ -0.21
CDH3-202ENST00000429102 RPGRIP1Q96KN7 1286 aa13.73□□□□□ -0.21
CDH3-202ENST00000429102 PLAAQ9Y263 795 aa13.73□□□□□ -0.21
CDH3-202ENST00000429102 SIK3Q9Y2K2 1263 aa13.73□□□□□ -0.21
CDH3-202ENST00000429102 PCNTO95613 3336 aa13.73□□□□□ -0.21
CDH3-202ENST00000429102 POTEFA5A3E0 1075 aa13.73□□□□□ -0.21
CDH3-202ENST00000429102 EIF3HO15372 352 aaKnown RBP eCLIP13.73□□□□□ -0.21
CDH3-202ENST00000429102 POTEIP0CG38 1075 aa13.73□□□□□ -0.21
CDH3-202ENST00000429102 SETQ01105 290 aaPredicted RBP13.73□□□□□ -0.21
CDH3-202ENST00000429102 POTEGQ6S5H5 508 aa13.73□□□□□ -0.21
CDH3-202ENST00000429102 POTEEQ6S8J3 1075 aa13.73□□□□□ -0.21
CDH3-202ENST00000429102 DDX25Q9UHL0 483 aaKnown RBP13.73□□□□□ -0.21
CDH3-202ENST00000429102 KIF1AQ12756 1690 aa13.73□□□□□ -0.21
CDH3-202ENST00000429102 ANO9A1A5B4 782 aa13.72□□□□□ -0.21
CDH3-202ENST00000429102 TLR2O60603 784 aa13.72□□□□□ -0.21
CDH3-202ENST00000429102 AARSP49588 968 aaKnown RBP eCLIP13.72□□□□□ -0.21
Retrieved 100 of 20,778 RNA–protein pairs in 54.9 ms