RNA–Protein interactions for RNA: ENST00000392449.4

PTPRK-208, Transcript of protein tyrosine phosphatase, receptor type K, humanhuman

TSL 2

Gene PTPRK, Length 1,456 nt, Biotype nonsense mediated decay, Subcellular localisation Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
PTPRK-208ENST00000392449 GGPS1O95749 300 aa19.19■□□□□ 0.66
PTPRK-208ENST00000392449 CCND2P30279 289 aa19.19■□□□□ 0.66
PTPRK-208ENST00000392449 ZNF200P98182 395 aaPredicted RBP19.19■□□□□ 0.66
PTPRK-208ENST00000392449 LAMC2Q13753 1193 aa19.19■□□□□ 0.66
PTPRK-208ENST00000392449 HIC1Q14526 733 aa19.19■□□□□ 0.66
PTPRK-208ENST00000392449 MFSD10Q14728 455 aa19.19■□□□□ 0.66
PTPRK-208ENST00000392449 KIAA0753Q2KHM9 967 aa19.19■□□□□ 0.66
PTPRK-208ENST00000392449 MYSM1Q5VVJ2 828 aa19.19■□□□□ 0.66
PTPRK-208ENST00000392449 FTOQ9C0B1 505 aaKnown RBP eCLIP19.19■□□□□ 0.66
PTPRK-208ENST00000392449 SLC28A3Q9HAS3 691 aa19.19■□□□□ 0.66
PTPRK-208ENST00000392449 MAP3K20Q9NYL2 800 aaKnown RBP19.19■□□□□ 0.66
PTPRK-208ENST00000392449 GTF2IRD1Q9UHL9 959 aa19.19■□□□□ 0.66
PTPRK-208ENST00000392449 SH2B2O14492 632 aaPredicted RBP19.18■□□□□ 0.66
PTPRK-208ENST00000392449 F2P00734 622 aa19.18■□□□□ 0.66
PTPRK-208ENST00000392449 PFKMP08237 780 aa19.18■□□□□ 0.66
PTPRK-208ENST00000392449 MRPS9P82933 396 aaKnown RBP19.18■□□□□ 0.66
PTPRK-208ENST00000392449 BFSP2Q13515 415 aa19.18■□□□□ 0.66
PTPRK-208ENST00000392449 GPNMBQ14956 572 aa19.18■□□□□ 0.66
PTPRK-208ENST00000392449 CELF3Q5SZQ8 465 aaKnown RBP19.18■□□□□ 0.66
PTPRK-208ENST00000392449 CASC1Q6TDU7 716 aa19.18■□□□□ 0.66
PTPRK-208ENST00000392449 SESTD1Q86VW0 696 aa19.18■□□□□ 0.66
PTPRK-208ENST00000392449 C7orf31Q8N865 590 aa19.18■□□□□ 0.66
PTPRK-208ENST00000392449 CTCFLQ8NI51 663 aaPredicted RBP19.18■□□□□ 0.66
PTPRK-208ENST00000392449 WNT8BQ93098 351 aa19.18■□□□□ 0.66
PTPRK-208ENST00000392449 SPATA33Q96N06 139 aa19.18■□□□□ 0.66
PTPRK-208ENST00000392449 GAS2L1Q99501 681 aaPredicted RBP19.18■□□□□ 0.66
PTPRK-208ENST00000392449 hCG_1642624A0A1W2PR95 340 aa19.17■□□□□ 0.66
PTPRK-208ENST00000392449 HAS3O00219 553 aa19.17■□□□□ 0.66
PTPRK-208ENST00000392449 DDAH1O94760 285 aa19.17■□□□□ 0.66
PTPRK-208ENST00000392449 PPP2R2DQ66LE6 453 aa19.17■□□□□ 0.66
PTPRK-208ENST00000392449 CREB3L3Q68CJ9 461 aa19.17■□□□□ 0.66
PTPRK-208ENST00000392449 USP17L6PQ6QN14 398 aa19.17■□□□□ 0.66
PTPRK-208ENST00000392449 NFXL1Q6ZNB6 911 aa19.17■□□□□ 0.66
PTPRK-208ENST00000392449 SRBD1Q8N5C6 995 aaKnown RBP19.17■□□□□ 0.66
PTPRK-208ENST00000392449 ANO2Q9NQ90 1003 aa19.17■□□□□ 0.66
PTPRK-208ENST00000392449 RTEL1Q9NZ71 1219 aa19.17■□□□□ 0.66
PTPRK-208ENST00000392449 TELO2Q9Y4R8 837 aa19.17■□□□□ 0.66
PTPRK-208ENST00000392449 IGFBP4P22692 258 aa19.16■□□□□ 0.66
PTPRK-208ENST00000392449 RFC2P35250 354 aa19.16■□□□□ 0.66
PTPRK-208ENST00000392449 CCDC85BQ15834 202 aaPredicted RBP19.16■□□□□ 0.66
PTPRK-208ENST00000392449 TCTN1Q2MV58 587 aa19.16■□□□□ 0.66
PTPRK-208ENST00000392449 TMCO2Q7Z6W1 182 aaPredicted RBP19.16■□□□□ 0.66
PTPRK-208ENST00000392449 SAMD3Q8N6K7 520 aa19.16■□□□□ 0.66
PTPRK-208ENST00000392449 SPZ1Q9BXG8 430 aa19.16■□□□□ 0.66
PTPRK-208ENST00000392449 PCDHA11Q9Y5I1 949 aa19.16■□□□□ 0.66
PTPRK-208ENST00000392449 FRMPD4Q14CM0 1322 aa19.16■□□□□ 0.66
PTPRK-208ENST00000392449 ARHGEF15O94989 841 aa19.16■□□□□ 0.66
PTPRK-208ENST00000392449 CA3P07451 260 aa19.16■□□□□ 0.66
PTPRK-208ENST00000392449 HOXD8P13378 290 aaPredicted RBP19.16■□□□□ 0.66
PTPRK-208ENST00000392449 MCM5P33992 734 aa19.16■□□□□ 0.66
PTPRK-208ENST00000392449 SEMA3FQ13275 785 aa19.16■□□□□ 0.66
PTPRK-208ENST00000392449 NECTIN1Q15223 517 aa19.16■□□□□ 0.66
PTPRK-208ENST00000392449 LRRC8DQ7L1W4 858 aa19.16■□□□□ 0.66
PTPRK-208ENST00000392449 RRP36Q96EU6 259 aaKnown RBP19.16■□□□□ 0.66
PTPRK-208ENST00000392449 CERS4Q9HA82 394 aa19.16■□□□□ 0.66
PTPRK-208ENST00000392449 CCDC69A6NI79 296 aa19.15■□□□□ 0.66
PTPRK-208ENST00000392449 NBNO60934 754 aa19.15■□□□□ 0.66
PTPRK-208ENST00000392449 CKBP12277 381 aa19.15■□□□□ 0.66
PTPRK-208ENST00000392449 ACTN1P12814 892 aa19.15■□□□□ 0.66
PTPRK-208ENST00000392449 SELPP16109 830 aa19.15■□□□□ 0.66
PTPRK-208ENST00000392449 KIF5BP33176 963 aa19.15■□□□□ 0.66
PTPRK-208ENST00000392449 TRAF1Q13077 416 aa19.15■□□□□ 0.66
PTPRK-208ENST00000392449 CCDC82Q8N4S0 544 aa19.15■□□□□ 0.66
PTPRK-208ENST00000392449 CAGE1Q8TC20 777 aa19.15■□□□□ 0.66
PTPRK-208ENST00000392449 AFAP1L1Q8TED9 768 aa19.15■□□□□ 0.66
PTPRK-208ENST00000392449 MAP3K14Q99558 947 aa19.15■□□□□ 0.66
PTPRK-208ENST00000392449 C16orf70Q9BSU1 422 aa19.15■□□□□ 0.66
PTPRK-208ENST00000392449 KATNAL1Q9BW62 490 aa19.15■□□□□ 0.66
PTPRK-208ENST00000392449 MLXIPQ9HAP2 919 aa19.15■□□□□ 0.66
PTPRK-208ENST00000392449 RFXAPO00287 272 aa19.14■□□□□ 0.65
PTPRK-208ENST00000392449 MEIS2O14770 477 aa19.14■□□□□ 0.65
PTPRK-208ENST00000392449 PPFIA4O75335 1185 aa19.14■□□□□ 0.65
PTPRK-208ENST00000392449 TRIM71Q2Q1W2 868 aaKnown RBP19.14■□□□□ 0.65
PTPRK-208ENST00000392449 KCNV1Q6PIU1 500 aa19.14■□□□□ 0.65
PTPRK-208ENST00000392449 SPRED2Q7Z698 418 aa19.14■□□□□ 0.65
PTPRK-208ENST00000392449 CCDC155Q8N6L0 562 aa19.14■□□□□ 0.65
PTPRK-208ENST00000392449 SMARCC2Q8TAQ2 1214 aa19.14■□□□□ 0.65
PTPRK-208ENST00000392449 TCEANC2Q96MN5 208 aa19.14■□□□□ 0.65
PTPRK-208ENST00000392449 TRANK1O15050 2925 aa19.13■□□□□ 0.65
PTPRK-208ENST00000392449 TGFB3P10600 412 aa19.13■□□□□ 0.65
PTPRK-208ENST00000392449 TRAF7Q6Q0C0 670 aa19.13■□□□□ 0.65
PTPRK-208ENST00000392449 CYFIP1Q7L576 1253 aa19.13■□□□□ 0.65
PTPRK-208ENST00000392449 HERC6Q8IVU3 1022 aa19.13■□□□□ 0.65
PTPRK-208ENST00000392449 TMEM87BQ96K49 555 aa19.13■□□□□ 0.65
PTPRK-208ENST00000392449 INPP4AQ96PE3 977 aaPredicted RBP19.13■□□□□ 0.65
PTPRK-208ENST00000392449 SEC63Q9UGP8 760 aaKnown RBP19.13■□□□□ 0.65
PTPRK-208ENST00000392449 EPOPA6NHQ4 379 aa19.12■□□□□ 0.65
PTPRK-208ENST00000392449 LGALS2P05162 132 aa19.12■□□□□ 0.65
PTPRK-208ENST00000392449 DEFB103AP81534 67 aa19.12■□□□□ 0.65
PTPRK-208ENST00000392449 SP4Q02446 784 aa19.12■□□□□ 0.65
PTPRK-208ENST00000392449 RBL2Q08999 1139 aa19.12■□□□□ 0.65
PTPRK-208ENST00000392449 MBTPS1Q14703 1052 aa19.12■□□□□ 0.65
PTPRK-208ENST00000392449 UBE2SQ16763 222 aa19.12■□□□□ 0.65
PTPRK-208ENST00000392449 ZNF618Q5T7W0 954 aa19.12■□□□□ 0.65
PTPRK-208ENST00000392449 MICU3Q86XE3 530 aa19.12■□□□□ 0.65
PTPRK-208ENST00000392449 TRIM50Q86XT4 487 aa19.12■□□□□ 0.65
PTPRK-208ENST00000392449 SLC9A7Q96T83 725 aa19.12■□□□□ 0.65
PTPRK-208ENST00000392449 XIRP2A4UGR9 3374 aa19.12■□□□□ 0.65
PTPRK-208ENST00000392449 SPATA31C2B4DYI2 1134 aa19.11■□□□□ 0.65
PTPRK-208ENST00000392449 LIFRP42702 1097 aa19.11■□□□□ 0.65
Retrieved 100 of 20,778 RNA–protein pairs in 17.6 ms