RNA–Protein interactions for RNA: ENST00000360019.7

CLN3-206, Transcript of CLN3, battenin, humanhuman

TSL 2 BASIC

Gene CLN3, Length 1,840 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLN3-206ENST00000360019 USP25Q9UHP3 1055 aa20.96■□□□□ 0.95
CLN3-206ENST00000360019 TMEM88BA6NKF7 163 aa20.95■□□□□ 0.94
CLN3-206ENST00000360019 PRR29P0C7W0 189 aa20.95■□□□□ 0.94
CLN3-206ENST00000360019 GCLCP48506 637 aaPredicted RBP20.95■□□□□ 0.94
CLN3-206ENST00000360019 TYRO3Q06418 890 aa20.95■□□□□ 0.94
CLN3-206ENST00000360019 CEP57L1Q8IYX8 460 aa20.95■□□□□ 0.94
CLN3-206ENST00000360019 SHCBP1Q8NEM2 672 aa20.95■□□□□ 0.94
CLN3-206ENST00000360019 RASSF8Q8NHQ8 419 aa20.95■□□□□ 0.94
CLN3-206ENST00000360019 PLIN2Q99541 437 aa20.95■□□□□ 0.94
CLN3-206ENST00000360019 MROH8Q9H579 483 aa20.95■□□□□ 0.94
CLN3-206ENST00000360019 KCNH7Q9NS40 1196 aa20.95■□□□□ 0.94
CLN3-206ENST00000360019 MORF4L1Q9UBU8 362 aa20.95■□□□□ 0.94
CLN3-206ENST00000360019 CCDC39Q9UFE4 941 aa20.95■□□□□ 0.94
CLN3-206ENST00000360019 GOLGA6L3A6NEY3 463 aa20.94■□□□□ 0.94
CLN3-206ENST00000360019 PSMD10O75832 226 aa20.94■□□□□ 0.94
CLN3-206ENST00000360019 CCDC192P0DO97 292 aa20.94■□□□□ 0.94
CLN3-206ENST00000360019 PLCG1P19174 1290 aa20.94■□□□□ 0.94
CLN3-206ENST00000360019 CCND2P30279 289 aa20.94■□□□□ 0.94
CLN3-206ENST00000360019 STAT6P42226 847 aa20.94■□□□□ 0.94
CLN3-206ENST00000360019 POSTNQ15063 836 aa20.94■□□□□ 0.94
CLN3-206ENST00000360019 RRAGBQ5VZM2 374 aa20.94■□□□□ 0.94
CLN3-206ENST00000360019 KRT79Q5XKE5 535 aa20.94■□□□□ 0.94
CLN3-206ENST00000360019 KANK3Q6NY19 840 aa20.94■□□□□ 0.94
CLN3-206ENST00000360019 XRRA1Q6P2D8 792 aa20.94■□□□□ 0.94
CLN3-206ENST00000360019 DNERQ8NFT8 737 aa20.94■□□□□ 0.94
CLN3-206ENST00000360019 SNX29Q8TEQ0 813 aa20.94■□□□□ 0.94
CLN3-206ENST00000360019 PAGE5Q96GU1 130 aa20.94■□□□□ 0.94
CLN3-206ENST00000360019 ZNF577Q9BSK1 485 aa20.94■□□□□ 0.94
CLN3-206ENST00000360019 EFCC1Q9HA90 598 aa20.94■□□□□ 0.94
CLN3-206ENST00000360019 GRB10Q13322 594 aa20.94■□□□□ 0.94
CLN3-206ENST00000360019 LRCH2Q5VUJ6 765 aa20.94■□□□□ 0.94
CLN3-206ENST00000360019 SASS6Q6UVJ0 657 aa20.94■□□□□ 0.94
CLN3-206ENST00000360019 FAM133AQ8N9E0 248 aa20.94■□□□□ 0.94
CLN3-206ENST00000360019 PNMA5Q96PV4 448 aa20.94■□□□□ 0.94
CLN3-206ENST00000360019 MTRQ99707 1265 aa20.94■□□□□ 0.94
CLN3-206ENST00000360019 PCNTO95613 3336 aa20.94■□□□□ 0.94
CLN3-206ENST00000360019 A0A087WWV3 80 aa20.93■□□□□ 0.94
CLN3-206ENST00000360019 POTEB2H3BUK9 544 aa20.93■□□□□ 0.94
CLN3-206ENST00000360019 IPO5O00410 1097 aaKnown RBP20.93■□□□□ 0.94
CLN3-206ENST00000360019 MTMR1Q13613 665 aa20.93■□□□□ 0.94
CLN3-206ENST00000360019 OTOP1Q7RTM1 612 aa20.93■□□□□ 0.94
CLN3-206ENST00000360019 CALML4Q96GE6 196 aa20.93■□□□□ 0.94
CLN3-206ENST00000360019 TUBE1Q9UJT0 475 aa20.93■□□□□ 0.94
CLN3-206ENST00000360019 SOWAHBA6NEL2 793 aa20.92■□□□□ 0.94
CLN3-206ENST00000360019 AFMP43652 599 aa20.92■□□□□ 0.94
CLN3-206ENST00000360019 ALDH5A1P51649 535 aaPredicted RBP20.92■□□□□ 0.94
CLN3-206ENST00000360019 ECM1Q16610 540 aa20.92■□□□□ 0.94
CLN3-206ENST00000360019 WDR78Q5VTH9 848 aa20.92■□□□□ 0.94
CLN3-206ENST00000360019 NCAPH2Q6IBW4 605 aa20.92■□□□□ 0.94
CLN3-206ENST00000360019 CCDC102AQ96A19 550 aa20.92■□□□□ 0.94
CLN3-206ENST00000360019 HHIPL1Q96JK4 782 aa20.92■□□□□ 0.94
CLN3-206ENST00000360019 INPP4AQ96PE3 977 aaPredicted RBP20.92■□□□□ 0.94
CLN3-206ENST00000360019 MMP19Q99542 508 aa20.92■□□□□ 0.94
CLN3-206ENST00000360019 RBSNQ9H1K0 784 aa20.92■□□□□ 0.94
CLN3-206ENST00000360019 AGO4Q9HCK5 861 aaKnown RBP20.92■□□□□ 0.94
CLN3-206ENST00000360019 HOOK1Q9UJC3 728 aaKnown RBP20.92■□□□□ 0.94
CLN3-206ENST00000360019 RGS20O76081 388 aa20.92■□□□□ 0.94
CLN3-206ENST00000360019 PGK2P07205 417 aa20.92■□□□□ 0.94
CLN3-206ENST00000360019 CCNA1P78396 465 aa20.92■□□□□ 0.94
CLN3-206ENST00000360019 FSTL1Q12841 308 aa20.92■□□□□ 0.94
CLN3-206ENST00000360019 KCTD2Q14681 263 aa20.92■□□□□ 0.94
CLN3-206ENST00000360019 STAMQ92783 540 aa20.92■□□□□ 0.94
CLN3-206ENST00000360019 IWS1Q96ST2 819 aa20.92■□□□□ 0.94
CLN3-206ENST00000360019 ZCCHC17Q9NP64 241 aaKnown RBP20.92■□□□□ 0.94
CLN3-206ENST00000360019 PCDHA5Q9Y5H7 936 aa20.92■□□□□ 0.94
CLN3-206ENST00000360019 ADGRA2Q96PE1 1338 aa20.91■□□□□ 0.94
CLN3-206ENST00000360019 DNAJC25-GNG10A0A024R161 153 aa20.91■□□□□ 0.94
CLN3-206ENST00000360019 EML1O00423 815 aa20.91■□□□□ 0.94
CLN3-206ENST00000360019 GAS7O60861 476 aa20.91■□□□□ 0.94
CLN3-206ENST00000360019 CASP1P29466 404 aa20.91■□□□□ 0.94
CLN3-206ENST00000360019 ITGB3BPQ13352 177 aaPredicted RBP20.91■□□□□ 0.94
CLN3-206ENST00000360019 PPP2R5CQ13362 524 aa20.91■□□□□ 0.94
CLN3-206ENST00000360019 FAM110CQ1W6H9 321 aa20.91■□□□□ 0.94
CLN3-206ENST00000360019 TMEM119Q4V9L6 283 aa20.91■□□□□ 0.94
CLN3-206ENST00000360019 HYIQ5T013 277 aa20.91■□□□□ 0.94
CLN3-206ENST00000360019 B3GNT9Q6UX72 402 aa20.91■□□□□ 0.94
CLN3-206ENST00000360019 IFNL1Q8IU54 200 aa20.91■□□□□ 0.94
CLN3-206ENST00000360019 FGD4Q96M96 766 aa20.91■□□□□ 0.94
CLN3-206ENST00000360019 RIT2Q99578 217 aa20.91■□□□□ 0.94
CLN3-206ENST00000360019 PKD2L1Q9P0L9 805 aa20.91■□□□□ 0.94
CLN3-206ENST00000360019 DHX15O43143 795 aaKnown RBP20.9■□□□□ 0.94
CLN3-206ENST00000360019 FCER1AP12319 257 aa20.9■□□□□ 0.94
CLN3-206ENST00000360019 EDNRBP24530 442 aa20.9■□□□□ 0.94
CLN3-206ENST00000360019 SEMA3FQ13275 785 aa20.9■□□□□ 0.94
CLN3-206ENST00000360019 GPRASP2Q96D09 838 aa20.9■□□□□ 0.94
CLN3-206ENST00000360019 CCDC34Q96HJ3 373 aa20.9■□□□□ 0.94
CLN3-206ENST00000360019 ZIC5Q96T25 663 aa20.9■□□□□ 0.94
CLN3-206ENST00000360019 MED24O75448 989 aa20.9■□□□□ 0.94
CLN3-206ENST00000360019 CCT6AP40227 531 aaKnown RBP20.9■□□□□ 0.94
CLN3-206ENST00000360019 INHBEP58166 350 aa20.9■□□□□ 0.94
CLN3-206ENST00000360019 NT5DC1Q5TFE4 455 aa20.9■□□□□ 0.94
CLN3-206ENST00000360019 ZNF784Q8NCA9 323 aaPredicted RBP20.9■□□□□ 0.94
CLN3-206ENST00000360019 SPATA20Q8TB22 786 aa20.9■□□□□ 0.94
CLN3-206ENST00000360019 CDK5RAP3Q96JB5 506 aa20.9■□□□□ 0.94
CLN3-206ENST00000360019 TEKT3Q9BXF9 490 aa20.9■□□□□ 0.94
CLN3-206ENST00000360019 UNC45AQ9H3U1 944 aa20.9■□□□□ 0.94
CLN3-206ENST00000360019 CUEDC2Q9H467 287 aa20.9■□□□□ 0.94
CLN3-206ENST00000360019 BLOC1S4Q9NUP1 217 aa20.9■□□□□ 0.94
CLN3-206ENST00000360019 ADD3Q9UEY8 706 aaKnown RBP20.9■□□□□ 0.94
CLN3-206ENST00000360019 BIN1O00499 593 aa20.89■□□□□ 0.93
Retrieved 100 of 20,778 RNA–protein pairs in 33.4 ms