RNA–Protein interactions for RNA: ENST00000334389.5

LINC00643-201, long intergenic non-protein coding RNA 643, humanhuman

TSL 2 BASIC

Gene LINC00643, Length 3,247 nt, Biotype retained intron.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LINC00643-201ENST00000334389 CFAP100Q494V2 611 aa2.01□□□□□ -2.09
LINC00643-201ENST00000334389 PRAMEF18Q5VWM3 479 aa2.01□□□□□ -2.09
LINC00643-201ENST00000334389 PPP1R18Q6NYC8 613 aa2.01□□□□□ -2.09
LINC00643-201ENST00000334389 PDZD3Q86UT5 571 aa2.01□□□□□ -2.09
LINC00643-201ENST00000334389 ANKRD18AQ8IVF6 992 aa2.01□□□□□ -2.09
LINC00643-201ENST00000334389 SLC44A5Q8NCS7 719 aa2.01□□□□□ -2.09
LINC00643-201ENST00000334389 VOPP1Q96AW1 172 aa2.01□□□□□ -2.09
LINC00643-201ENST00000334389 MAML3Q96JK9 1138 aa2.01□□□□□ -2.09
LINC00643-201ENST00000334389 CNTNAP3BQ96NU0 1288 aa2.01□□□□□ -2.09
LINC00643-201ENST00000334389 MYADMQ96S97 322 aa2.01□□□□□ -2.09
LINC00643-201ENST00000334389 STK31Q9BXU1 1019 aa2.01□□□□□ -2.09
LINC00643-201ENST00000334389 CNTNAP3Q9BZ76 1288 aa2.01□□□□□ -2.09
LINC00643-201ENST00000334389 HOXC10Q9NYD6 342 aa2.01□□□□□ -2.09
LINC00643-201ENST00000334389 MED19A0JLT2 244 aaPredicted RBP2□□□□□ -2.09
LINC00643-201ENST00000334389 TNPO2O14787 897 aaKnown RBP2□□□□□ -2.09
LINC00643-201ENST00000334389 NPC1O15118 1278 aa2□□□□□ -2.09
LINC00643-201ENST00000334389 PHF14O94880 888 aa2□□□□□ -2.09
LINC00643-201ENST00000334389 FGRP09769 529 aa2□□□□□ -2.09
LINC00643-201ENST00000334389 SPATA31C1P0DKV0 1188 aa2□□□□□ -2.09
LINC00643-201ENST00000334389 ITGB7P26010 798 aa2□□□□□ -2.09
LINC00643-201ENST00000334389 LRRC32Q14392 662 aa2□□□□□ -2.09
LINC00643-201ENST00000334389 GCKRQ14397 625 aa2□□□□□ -2.09
LINC00643-201ENST00000334389 NBPF12Q5TAG4 269 aaPredicted RBP2□□□□□ -2.09
LINC00643-201ENST00000334389 PRR23BQ6ZRT6 265 aa2□□□□□ -2.09
LINC00643-201ENST00000334389 PROSER1Q86XN7 944 aa2□□□□□ -2.09
LINC00643-201ENST00000334389 DZIP1LQ8IYY4 767 aaKnown RBP2□□□□□ -2.09
LINC00643-201ENST00000334389 TEKT1Q969V4 418 aa2□□□□□ -2.09
LINC00643-201ENST00000334389 CCDC17Q96LX7 622 aa2□□□□□ -2.09
LINC00643-201ENST00000334389 IWS1Q96ST2 819 aa2□□□□□ -2.09
LINC00643-201ENST00000334389 TBX20Q9UMR3 447 aa2□□□□□ -2.09
LINC00643-201ENST00000334389 GABRQQ9UN88 632 aa2□□□□□ -2.09
LINC00643-201ENST00000334389 ANGEL1Q9UNK9 670 aaKnown RBP2□□□□□ -2.09
LINC00643-201ENST00000334389 SLC4A7Q9Y6M7 1214 aa2□□□□□ -2.09
LINC00643-201ENST00000334389 PTPN13Q12923 2485 aa2□□□□□ -2.09
LINC00643-201ENST00000334389 IQCJ-SCHIP1C9J366 451 aaPredicted RBP2□□□□□ -2.09
LINC00643-201ENST00000334389 UBE2Q2LH0YL09 131 aa2□□□□□ -2.09
LINC00643-201ENST00000334389 SMARCA1P28370 1054 aa2□□□□□ -2.09
LINC00643-201ENST00000334389 NRIP1P48552 1158 aa2□□□□□ -2.09
LINC00643-201ENST00000334389 CPT1AP50416 773 aa2□□□□□ -2.09
LINC00643-201ENST00000334389 CCR3P51677 355 aa2□□□□□ -2.09
LINC00643-201ENST00000334389 FAM50AQ14320 339 aaKnown RBP2□□□□□ -2.09
LINC00643-201ENST00000334389 SPECC1Q5M775 1068 aa2□□□□□ -2.09
LINC00643-201ENST00000334389 TTC39AQ5SRH9 613 aa2□□□□□ -2.09
LINC00643-201ENST00000334389 TMPRSS7Q7RTY8 843 aa2□□□□□ -2.09
LINC00643-201ENST00000334389 LINC01465Q8N7H1 131 aa2□□□□□ -2.09
LINC00643-201ENST00000334389 TTC9Q92623 222 aa2□□□□□ -2.09
LINC00643-201ENST00000334389 BADQ92934 168 aa2□□□□□ -2.09
LINC00643-201ENST00000334389 FAM131CQ96AQ9 280 aa2□□□□□ -2.09
LINC00643-201ENST00000334389 CCDC51Q96ER9 411 aa2□□□□□ -2.09
LINC00643-201ENST00000334389 EDC3Q96F86 508 aaKnown RBP2□□□□□ -2.09
LINC00643-201ENST00000334389 NEK1Q96PY6 1258 aa2□□□□□ -2.09
LINC00643-201ENST00000334389 MPHOSPH6Q99547 160 aaKnown RBP2□□□□□ -2.09
LINC00643-201ENST00000334389 CRNKL1Q9BZJ0 848 aaKnown RBP2□□□□□ -2.09
LINC00643-201ENST00000334389 WNT8AQ9H1J5 351 aa2□□□□□ -2.09
LINC00643-201ENST00000334389 KDM4CQ9H3R0 1056 aa2□□□□□ -2.09
LINC00643-201ENST00000334389 C8orf33Q9H7E9 229 aaPredicted RBP2□□□□□ -2.09
LINC00643-201ENST00000334389 RBPJLQ9UBG7 517 aa2□□□□□ -2.09
LINC00643-201ENST00000334389 SETXQ7Z333 2677 aaKnown RBP2□□□□□ -2.09
LINC00643-201ENST00000334389 USP9XQ93008 2570 aaPredicted RBP2□□□□□ -2.09
LINC00643-201ENST00000334389 LINC01553A4QN01 128 aa2□□□□□ -2.09
LINC00643-201ENST00000334389 FAM187AA6NFU0 413 aa2□□□□□ -2.09
LINC00643-201ENST00000334389 SRRM3A6NNA2 597 aaPredicted RBP2□□□□□ -2.09
LINC00643-201ENST00000334389 TMEM189-UBE2V1I3L0A0 370 aa2□□□□□ -2.09
LINC00643-201ENST00000334389 KINO60870 393 aaKnown RBP2□□□□□ -2.09
LINC00643-201ENST00000334389 KRT38O76015 456 aa2□□□□□ -2.09
LINC00643-201ENST00000334389 SKIP12755 728 aa2□□□□□ -2.09
LINC00643-201ENST00000334389 HOXA13P31271 388 aaPredicted RBP2□□□□□ -2.09
LINC00643-201ENST00000334389 SLC6A4P31645 630 aa2□□□□□ -2.09
LINC00643-201ENST00000334389 PHKA1P46020 1223 aa2□□□□□ -2.09
LINC00643-201ENST00000334389 HARS2P49590 506 aaKnown RBP2□□□□□ -2.09
LINC00643-201ENST00000334389 WDR5P61964 334 aaKnown RBP2□□□□□ -2.09
LINC00643-201ENST00000334389 PTGDRQ13258 359 aa2□□□□□ -2.09
LINC00643-201ENST00000334389 COL9A2Q14055 689 aaPredicted RBP2□□□□□ -2.09
LINC00643-201ENST00000334389 RSPO4Q2I0M5 234 aaPredicted RBP2□□□□□ -2.09
LINC00643-201ENST00000334389 SBK1Q52WX2 424 aa2□□□□□ -2.09
LINC00643-201ENST00000334389 WDR48Q8TAF3 677 aa2□□□□□ -2.09
LINC00643-201ENST00000334389 TOP1MTQ969P6 601 aa2□□□□□ -2.09
LINC00643-201ENST00000334389 TMEM159Q96B96 161 aa2□□□□□ -2.09
LINC00643-201ENST00000334389 BUD13Q9BRD0 619 aaKnown RBP eCLIP2□□□□□ -2.09
LINC00643-201ENST00000334389 LZTS2Q9BRK4 669 aa2□□□□□ -2.09
LINC00643-201ENST00000334389 MTG1Q9BT17 334 aaPredicted RBP2□□□□□ -2.09
LINC00643-201ENST00000334389 CLMPQ9H6B4 373 aa2□□□□□ -2.09
LINC00643-201ENST00000334389 SFXN1Q9H9B4 322 aa2□□□□□ -2.09
LINC00643-201ENST00000334389 FBRSQ9HAH7 460 aa2□□□□□ -2.09
LINC00643-201ENST00000334389 XPO5Q9HAV4 1204 aaKnown RBP eCLIP2□□□□□ -2.09
LINC00643-201ENST00000334389 GPRC5CQ9NQ84 441 aa2□□□□□ -2.09
LINC00643-201ENST00000334389 SH2B1Q9NRF2 756 aaPredicted RBP2□□□□□ -2.09
LINC00643-201ENST00000334389 STARD5Q9NSY2 213 aa2□□□□□ -2.09
LINC00643-201ENST00000334389 TCP11L1Q9NUJ3 509 aa2□□□□□ -2.09
LINC00643-201ENST00000334389 TMOD2Q9NZR1 351 aa2□□□□□ -2.09
LINC00643-201ENST00000334389 CLEC1BQ9P126 229 aa2□□□□□ -2.09
LINC00643-201ENST00000334389 ATP1B4Q9UN42 357 aaPredicted RBP2□□□□□ -2.09
LINC00643-201ENST00000334389 CEP192Q8TEP8 1941 aa1.99□□□□□ -2.09
LINC00643-201ENST00000334389 NBPF19A0A087WUL8 3843 aa1.99□□□□□ -2.09
LINC00643-201ENST00000334389 RECQL4O94761 1208 aa1.99□□□□□ -2.09
LINC00643-201ENST00000334389 LRG1P02750 347 aa1.99□□□□□ -2.09
LINC00643-201ENST00000334389 RARBP10826 455 aa1.99□□□□□ -2.09
LINC00643-201ENST00000334389 SELPP16109 830 aa1.99□□□□□ -2.09
LINC00643-201ENST00000334389 POU5F1BQ06416 359 aa1.99□□□□□ -2.09
LINC00643-201ENST00000334389 PDE4DQ08499 809 aa1.99□□□□□ -2.09
Retrieved 100 of 20,778 RNA–protein pairs in 15.3 ms