RNA–Protein interactions for RNA: ENST00000301897.5

CCDC88B-201, Transcript of coiled-coil domain containing 88B, humanhuman

TSL 1 (best) BASIC

Gene CCDC88B, Length 870 nt, Biotype protein coding, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC88B-201ENST00000301897 UBAC1Q9BSL1 405 aa17.2■□□□□ 0.34
CCDC88B-201ENST00000301897 JMJD4Q9H9V9 463 aa17.2■□□□□ 0.34
CCDC88B-201ENST00000301897 DIAPH3Q9NSV4 1193 aa17.2■□□□□ 0.34
CCDC88B-201ENST00000301897 INSL6Q9Y581 213 aa17.2■□□□□ 0.34
CCDC88B-201ENST00000301897 LINC01553A4QN01 128 aa17.19■□□□□ 0.34
CCDC88B-201ENST00000301897 LGR5O75473 907 aa17.19■□□□□ 0.34
CCDC88B-201ENST00000301897 ZNF286BP0CG31 522 aa17.19■□□□□ 0.34
CCDC88B-201ENST00000301897 ZNF618Q5T7W0 954 aa17.19■□□□□ 0.34
CCDC88B-201ENST00000301897 LRFN3Q9BTN0 628 aa17.19■□□□□ 0.34
CCDC88B-201ENST00000301897 DSCC1Q9BVC3 393 aa17.19■□□□□ 0.34
CCDC88B-201ENST00000301897 LNPKQ9C0E8 428 aa17.19■□□□□ 0.34
CCDC88B-201ENST00000301897 B4E1Z4 1266 aa17.18■□□□□ 0.34
CCDC88B-201ENST00000301897 GPR37L1O60883 481 aa17.18■□□□□ 0.34
CCDC88B-201ENST00000301897 AMHP03971 560 aa17.18■□□□□ 0.34
CCDC88B-201ENST00000301897 TRIM71Q2Q1W2 868 aaKnown RBP17.18■□□□□ 0.34
CCDC88B-201ENST00000301897 CELF3Q5SZQ8 465 aaKnown RBP17.18■□□□□ 0.34
CCDC88B-201ENST00000301897 MYSM1Q5VVJ2 828 aa17.18■□□□□ 0.34
CCDC88B-201ENST00000301897 STOX1Q6ZVD7 989 aa17.18■□□□□ 0.34
CCDC88B-201ENST00000301897 SPATA33Q96N06 139 aa17.18■□□□□ 0.34
CCDC88B-201ENST00000301897 SAMD11Q96NU1 681 aa17.18■□□□□ 0.34
CCDC88B-201ENST00000301897 PDCD2LQ9BRP1 358 aa17.18■□□□□ 0.34
CCDC88B-201ENST00000301897 OSBPL3Q9H4L5 887 aa17.18■□□□□ 0.34
CCDC88B-201ENST00000301897 EPHX3Q9H6B9 360 aa17.18■□□□□ 0.34
CCDC88B-201ENST00000301897 UBE2ZQ9H832 354 aaPredicted RBP17.18■□□□□ 0.34
CCDC88B-201ENST00000301897 SUGCTQ9HAC7 445 aa17.18■□□□□ 0.34
CCDC88B-201ENST00000301897 VAT1LQ9HCJ6 419 aa17.18■□□□□ 0.34
CCDC88B-201ENST00000301897 ZSWIM5Q9P217 1185 aa17.18■□□□□ 0.34
CCDC88B-201ENST00000301897 MUC6Q6W4X9 2439 aa17.18■□□□□ 0.34
CCDC88B-201ENST00000301897 MICAL3Q7RTP6 2002 aa17.18■□□□□ 0.34
CCDC88B-201ENST00000301897 IFIT1BQ5T764 474 aaKnown RBP17.17■□□□□ 0.34
CCDC88B-201ENST00000301897 TRAF7Q6Q0C0 670 aa17.17■□□□□ 0.34
CCDC88B-201ENST00000301897 CWC27Q6UX04 472 aaKnown RBP17.17■□□□□ 0.34
CCDC88B-201ENST00000301897 SPRED2Q7Z698 418 aa17.17■□□□□ 0.34
CCDC88B-201ENST00000301897 TMCO2Q7Z6W1 182 aaPredicted RBP17.17■□□□□ 0.34
CCDC88B-201ENST00000301897 SERINC5Q86VE9 423 aa17.17■□□□□ 0.34
CCDC88B-201ENST00000301897 VSIG10LQ86VR7 867 aa17.17■□□□□ 0.34
CCDC88B-201ENST00000301897 FBXO22Q8NEZ5 403 aa17.17■□□□□ 0.34
CCDC88B-201ENST00000301897 RWDD1Q9H446 243 aaPredicted RBP17.17■□□□□ 0.34
CCDC88B-201ENST00000301897 MTUS1Q9ULD2 1270 aa17.17■□□□□ 0.34
CCDC88B-201ENST00000301897 PPAN-P2RY11A0A0B4J1V8 794 aaPredicted RBP17.16■□□□□ 0.34
CCDC88B-201ENST00000301897 RSPH10B2B2RC85 870 aa17.16■□□□□ 0.34
CCDC88B-201ENST00000301897 KLRF2D3W0D1 207 aa17.16■□□□□ 0.34
CCDC88B-201ENST00000301897 ZBTB5O15062 677 aa17.16■□□□□ 0.34
CCDC88B-201ENST00000301897 CAND2O75155 1236 aa17.16■□□□□ 0.34
CCDC88B-201ENST00000301897 GGPS1O95749 300 aa17.16■□□□□ 0.34
CCDC88B-201ENST00000301897 RSPH10BP0C881 870 aa17.16■□□□□ 0.34
CCDC88B-201ENST00000301897 MYCLP12524 364 aaPredicted RBP17.16■□□□□ 0.34
CCDC88B-201ENST00000301897 CCND2P30279 289 aa17.16■□□□□ 0.34
CCDC88B-201ENST00000301897 PTPROQ16827 1216 aa17.16■□□□□ 0.34
CCDC88B-201ENST00000301897 LEXMQ3ZCV2 418 aa17.16■□□□□ 0.34
CCDC88B-201ENST00000301897 MTMR8Q96EF0 704 aa17.16■□□□□ 0.34
CCDC88B-201ENST00000301897 PCDHA1Q9Y5I3 950 aa17.16■□□□□ 0.34
CCDC88B-201ENST00000301897 C17orf102A2RUQ5 167 aa17.15■□□□□ 0.34
CCDC88B-201ENST00000301897 OPLAHO14841 1288 aa17.15■□□□□ 0.34
CCDC88B-201ENST00000301897 THPOP40225 353 aa17.15■□□□□ 0.34
CCDC88B-201ENST00000301897 MBTPS1Q14703 1052 aa17.15■□□□□ 0.34
CCDC88B-201ENST00000301897 PGM5Q15124 567 aa17.15■□□□□ 0.34
CCDC88B-201ENST00000301897 PUS10Q3MIT2 529 aaKnown RBP17.15■□□□□ 0.34
CCDC88B-201ENST00000301897 HSDL1Q3SXM5 330 aa17.15■□□□□ 0.34
CCDC88B-201ENST00000301897 FAM117BQ6P1L5 589 aa17.15■□□□□ 0.34
CCDC88B-201ENST00000301897 SMC5Q8IY18 1101 aa17.15■□□□□ 0.34
CCDC88B-201ENST00000301897 MLXIPQ9HAP2 919 aa17.15■□□□□ 0.34
CCDC88B-201ENST00000301897 PI4K2BG5E9Z4 385 aa17.14■□□□□ 0.33
CCDC88B-201ENST00000301897 STAM2O75886 525 aa17.14■□□□□ 0.33
CCDC88B-201ENST00000301897 RGS20O76081 388 aa17.14■□□□□ 0.33
CCDC88B-201ENST00000301897 GNAT1P11488 350 aa17.14■□□□□ 0.33
CCDC88B-201ENST00000301897 HOXD11P31277 338 aaPredicted RBP17.14■□□□□ 0.33
CCDC88B-201ENST00000301897 HTRA4P83105 476 aaPredicted RBP17.14■□□□□ 0.33
CCDC88B-201ENST00000301897 ZNF200P98182 395 aaPredicted RBP17.14■□□□□ 0.33
CCDC88B-201ENST00000301897 TCTN1Q2MV58 587 aa17.14■□□□□ 0.33
CCDC88B-201ENST00000301897 GNPTABQ3T906 1256 aa17.14■□□□□ 0.33
CCDC88B-201ENST00000301897 TIGD5Q53EQ6 642 aa17.14■□□□□ 0.33
CCDC88B-201ENST00000301897 PLEKHG4Q58EX7 1191 aa17.14■□□□□ 0.33
CCDC88B-201ENST00000301897 CHD1LQ86WJ1 897 aa17.14■□□□□ 0.33
CCDC88B-201ENST00000301897 PLEKHM2Q8IWE5 1019 aa17.14■□□□□ 0.33
CCDC88B-201ENST00000301897 MYOCDQ8IZQ8 938 aa17.14■□□□□ 0.33
CCDC88B-201ENST00000301897 DBF4BQ8NFT6 615 aa17.14■□□□□ 0.33
CCDC88B-201ENST00000301897 SP7Q8TDD2 431 aaPredicted RBP17.14■□□□□ 0.33
CCDC88B-201ENST00000301897 SEPT8Q92599 483 aa17.14■□□□□ 0.33
CCDC88B-201ENST00000301897 ATP6V0A1Q93050 837 aa17.14■□□□□ 0.33
CCDC88B-201ENST00000301897 MRPL38Q96DV4 380 aaKnown RBP17.14■□□□□ 0.33
CCDC88B-201ENST00000301897 H3BRB1 525 aa17.13■□□□□ 0.33
CCDC88B-201ENST00000301897 GCOM1H8Y6P7 765 aaPredicted RBP17.13■□□□□ 0.33
CCDC88B-201ENST00000301897 POLR2MP0CAP2 368 aa17.13■□□□□ 0.33
CCDC88B-201ENST00000301897 UBA1P22314 1058 aaKnown RBP17.13■□□□□ 0.33
CCDC88B-201ENST00000301897 HOXC8P31273 242 aa17.13■□□□□ 0.33
CCDC88B-201ENST00000301897 MKRN4PQ13434 485 aaPredicted RBP17.13■□□□□ 0.33
CCDC88B-201ENST00000301897 FAM178BQ8IXR5 827 aa17.13■□□□□ 0.33
CCDC88B-201ENST00000301897 STAG2Q8N3U4 1231 aa17.13■□□□□ 0.33
CCDC88B-201ENST00000301897 WNT8BQ93098 351 aa17.13■□□□□ 0.33
CCDC88B-201ENST00000301897 C16orf70Q9BSU1 422 aa17.13■□□□□ 0.33
CCDC88B-201ENST00000301897 USP26Q9BXU7 913 aa17.13■□□□□ 0.33
CCDC88B-201ENST00000301897 TUT1Q9H6E5 874 aaKnown RBP17.13■□□□□ 0.33
CCDC88B-201ENST00000301897 MAD2L2Q9UI95 211 aa17.13■□□□□ 0.33
CCDC88B-201ENST00000301897 FAM50BQ9Y247 325 aa17.13■□□□□ 0.33
CCDC88B-201ENST00000301897 PALM3A6NDB9 673 aaPredicted RBP17.12■□□□□ 0.33
CCDC88B-201ENST00000301897 NOP56O00567 594 aaKnown RBP17.12■□□□□ 0.33
CCDC88B-201ENST00000301897 KCNA5P22460 613 aa17.12■□□□□ 0.33
CCDC88B-201ENST00000301897 NUCB1Q02818 461 aa17.12■□□□□ 0.33
CCDC88B-201ENST00000301897 TRDNQ13061 729 aa17.12■□□□□ 0.33
Retrieved 100 of 20,778 RNA–protein pairs in 75 ms