RNA–Protein interactions for RNA: ENST00000278386.10

CD44-203, Transcript of CD44 molecule (Indian blood group), humanhuman

TSL 1 (best) BASIC

Gene CD44, Length 484 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CD44-203ENST00000278386 IL27Q8NEV9 243 aa14.78□□□□□ -0.04
CD44-203ENST00000278386 DHX38Q92620 1227 aaKnown RBP14.78□□□□□ -0.04
CD44-203ENST00000278386 ZFP91Q96JP5 570 aaPredicted RBP14.78□□□□□ -0.04
CD44-203ENST00000278386 TSPYL2Q9H2G4 693 aaPredicted RBP14.78□□□□□ -0.04
CD44-203ENST00000278386 RIOX1Q9H6W3 641 aa14.78□□□□□ -0.04
CD44-203ENST00000278386 TAF6LQ9Y6J9 622 aa14.78□□□□□ -0.04
CD44-203ENST00000278386 PNMA6FA0A0J9YX94 578 aa14.77□□□□□ -0.05
CD44-203ENST00000278386 SGSM2O43147 1006 aa14.77□□□□□ -0.05
CD44-203ENST00000278386 GTPBP6O43824 516 aaPredicted RBP14.77□□□□□ -0.05
CD44-203ENST00000278386 RGS20O76081 388 aa14.77□□□□□ -0.05
CD44-203ENST00000278386 CKBP12277 381 aa14.77□□□□□ -0.05
CD44-203ENST00000278386 CELF3Q5SZQ8 465 aaKnown RBP14.77□□□□□ -0.05
CD44-203ENST00000278386 HERC6Q8IVU3 1022 aa14.77□□□□□ -0.05
CD44-203ENST00000278386 PHOSPHO2Q8TCD6 241 aa14.77□□□□□ -0.05
CD44-203ENST00000278386 ATXN2LQ8WWM7 1075 aaKnown RBP14.77□□□□□ -0.05
CD44-203ENST00000278386 CTAGE1Q96RT6 745 aa14.77□□□□□ -0.05
CD44-203ENST00000278386 MLXIPQ9HAP2 919 aa14.77□□□□□ -0.05
CD44-203ENST00000278386 PRRC2BQ5JSZ5 2229 aaKnown RBP14.77□□□□□ -0.05
CD44-203ENST00000278386 CYTH3O43739 400 aa14.76□□□□□ -0.05
CD44-203ENST00000278386 TLL1O43897 1013 aa14.76□□□□□ -0.05
CD44-203ENST00000278386 PARNO95453 639 aaKnown RBP14.76□□□□□ -0.05
CD44-203ENST00000278386 ANTXR2P58335 489 aa14.76□□□□□ -0.05
CD44-203ENST00000278386 WDR5P61964 334 aaKnown RBP14.76□□□□□ -0.05
CD44-203ENST00000278386 RBL2Q08999 1139 aa14.76□□□□□ -0.05
CD44-203ENST00000278386 TROAPQ12815 778 aa14.76□□□□□ -0.05
CD44-203ENST00000278386 PTK7Q13308 1070 aa14.76□□□□□ -0.05
CD44-203ENST00000278386 SKIV2LQ15477 1246 aaKnown RBP14.76□□□□□ -0.05
CD44-203ENST00000278386 HSDL1Q3SXM5 330 aa14.76□□□□□ -0.05
CD44-203ENST00000278386 MYSM1Q5VVJ2 828 aa14.76□□□□□ -0.05
CD44-203ENST00000278386 CNKSR3Q6P9H4 555 aa14.76□□□□□ -0.05
CD44-203ENST00000278386 CASC1Q6TDU7 716 aa14.76□□□□□ -0.05
CD44-203ENST00000278386 VSIG10LQ86VR7 867 aa14.76□□□□□ -0.05
CD44-203ENST00000278386 MB21D2Q8IYB1 491 aaPredicted RBP14.76□□□□□ -0.05
CD44-203ENST00000278386 CTCFLQ8NI51 663 aaPredicted RBP14.76□□□□□ -0.05
CD44-203ENST00000278386 ARNTL2Q8WYA1 636 aa14.76□□□□□ -0.05
CD44-203ENST00000278386 GPKOWQ92917 476 aaPredicted RBP eCLIP14.76□□□□□ -0.05
CD44-203ENST00000278386 MYL10Q9BUA6 226 aa14.76□□□□□ -0.05
CD44-203ENST00000278386 RBM8AQ9Y5S9 174 aaKnown RBP14.76□□□□□ -0.05
CD44-203ENST00000278386 HAS3O00219 553 aa14.75□□□□□ -0.05
CD44-203ENST00000278386 RFXAPO00287 272 aa14.75□□□□□ -0.05
CD44-203ENST00000278386 NOP56O00567 594 aaKnown RBP14.75□□□□□ -0.05
CD44-203ENST00000278386 MRPS5P82675 430 aaKnown RBP14.75□□□□□ -0.05
CD44-203ENST00000278386 GNPTABQ3T906 1256 aa14.75□□□□□ -0.05
CD44-203ENST00000278386 ASB2Q96Q27 587 aa14.75□□□□□ -0.05
CD44-203ENST00000278386 ZBED2Q9BTP6 218 aa14.75□□□□□ -0.05
CD44-203ENST00000278386 SEC63Q9UGP8 760 aaKnown RBP14.75□□□□□ -0.05
CD44-203ENST00000278386 REV3LO60673 3130 aa14.75□□□□□ -0.05
CD44-203ENST00000278386 NLRC5Q86WI3 1866 aa14.74□□□□□ -0.05
CD44-203ENST00000278386 FRMPD4Q14CM0 1322 aa14.74□□□□□ -0.05
CD44-203ENST00000278386 EPOPA6NHQ4 379 aa14.74□□□□□ -0.05
CD44-203ENST00000278386 TNFRSF10AO00220 468 aa14.74□□□□□ -0.05
CD44-203ENST00000278386 NBNO60934 754 aa14.74□□□□□ -0.05
CD44-203ENST00000278386 DDAH1O94760 285 aa14.74□□□□□ -0.05
CD44-203ENST00000278386 ARHGEF15O94989 841 aa14.74□□□□□ -0.05
CD44-203ENST00000278386 TGFB3P10600 412 aa14.74□□□□□ -0.05
CD44-203ENST00000278386 HOXD8P13378 290 aaPredicted RBP14.74□□□□□ -0.05
CD44-203ENST00000278386 KIF5BP33176 963 aa14.74□□□□□ -0.05
CD44-203ENST00000278386 DEFB103AP81534 67 aa14.74□□□□□ -0.05
CD44-203ENST00000278386 ZNF200P98182 395 aaPredicted RBP14.74□□□□□ -0.05
CD44-203ENST00000278386 SP2Q02086 613 aa14.74□□□□□ -0.05
CD44-203ENST00000278386 TAP1Q03518 808 aa14.74□□□□□ -0.05
CD44-203ENST00000278386 NFXL1Q6ZNB6 911 aa14.74□□□□□ -0.05
CD44-203ENST00000278386 TMCO2Q7Z6W1 182 aaPredicted RBP14.74□□□□□ -0.05
CD44-203ENST00000278386 ZNF654Q8IZM8 581 aa14.74□□□□□ -0.05
CD44-203ENST00000278386 SMARCC2Q8TAQ2 1214 aa14.74□□□□□ -0.05
CD44-203ENST00000278386 CUL5Q93034 780 aa14.74□□□□□ -0.05
CD44-203ENST00000278386 WNT8BQ93098 351 aa14.74□□□□□ -0.05
CD44-203ENST00000278386 RRP36Q96EU6 259 aaKnown RBP14.74□□□□□ -0.05
CD44-203ENST00000278386 TTC28Q96AY4 2481 aa14.73□□□□□ -0.05
CD44-203ENST00000278386 C17orf102A2RUQ5 167 aa14.73□□□□□ -0.05
CD44-203ENST00000278386 CCDC69A6NI79 296 aa14.73□□□□□ -0.05
CD44-203ENST00000278386 PRC1O43663 620 aa14.73□□□□□ -0.05
CD44-203ENST00000278386 PPFIA4O75335 1185 aa14.73□□□□□ -0.05
CD44-203ENST00000278386 CXCL10P02778 98 aa14.73□□□□□ -0.05
CD44-203ENST00000278386 LGALS2P05162 132 aa14.73□□□□□ -0.05
CD44-203ENST00000278386 ZNF618Q5T7W0 954 aa14.73□□□□□ -0.05
CD44-203ENST00000278386 ADAMTS19Q8TE59 1207 aa14.73□□□□□ -0.05
CD44-203ENST00000278386 MAP4K1Q92918 833 aa14.73□□□□□ -0.05
CD44-203ENST00000278386 SPZ1Q9BXG8 430 aa14.73□□□□□ -0.05
CD44-203ENST00000278386 LY9Q9HBG7 655 aa14.73□□□□□ -0.05
CD44-203ENST00000278386 TRANK1O15050 2925 aa14.73□□□□□ -0.05
CD44-203ENST00000278386 MUC3AQ02505 3323 aa14.72□□□□□ -0.05
CD44-203ENST00000278386 LCHNA4D1U4 455 aa14.72□□□□□ -0.05
CD44-203ENST00000278386 EFCAB14O75071 495 aa14.72□□□□□ -0.05
CD44-203ENST00000278386 STAM2O75886 525 aa14.72□□□□□ -0.05
CD44-203ENST00000278386 THPOP40225 353 aa14.72□□□□□ -0.05
CD44-203ENST00000278386 SP4Q02446 784 aa14.72□□□□□ -0.05
CD44-203ENST00000278386 IKBKEQ14164 716 aa14.72□□□□□ -0.05
CD44-203ENST00000278386 NEDD9Q14511 834 aa14.72□□□□□ -0.05
CD44-203ENST00000278386 GPNMBQ14956 572 aa14.72□□□□□ -0.05
CD44-203ENST00000278386 TRIM71Q2Q1W2 868 aaKnown RBP14.72□□□□□ -0.05
CD44-203ENST00000278386 KRT40Q6A162 431 aa14.72□□□□□ -0.05
CD44-203ENST00000278386 FAM117BQ6P1L5 589 aa14.72□□□□□ -0.05
CD44-203ENST00000278386 CYFIP1Q7L576 1253 aa14.72□□□□□ -0.05
CD44-203ENST00000278386 SPRED2Q7Z698 418 aa14.72□□□□□ -0.05
CD44-203ENST00000278386 IGDCC4Q8TDY8 1250 aa14.72□□□□□ -0.05
CD44-203ENST00000278386 ATP6V0A1Q93050 837 aa14.72□□□□□ -0.05
CD44-203ENST00000278386 UHRF1Q96T88 793 aaPredicted RBP14.72□□□□□ -0.05
CD44-203ENST00000278386 C16orf70Q9BSU1 422 aa14.72□□□□□ -0.05
CD44-203ENST00000278386 RTEL1Q9NZ71 1219 aa14.72□□□□□ -0.05
Retrieved 100 of 20,778 RNA–protein pairs in 15.6 ms