RNA–Protein interactions for RNA: ENST00000249440.4

HOXD3-201, Transcript of homeobox D3, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene HOXD3, Length 2,303 nt, Biotype protein coding.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
HOXD3-201ENST00000249440 EIF4A3P38919 411 aaKnown RBP18.2■□□□□ 0.5
HOXD3-201ENST00000249440 LMAN1P49257 510 aa18.2■□□□□ 0.5
HOXD3-201ENST00000249440 FKBP3Q00688 224 aaKnown RBP18.2■□□□□ 0.5
HOXD3-201ENST00000249440 ARHGAP27Q6ZUM4 889 aa18.2■□□□□ 0.5
HOXD3-201ENST00000249440 RRAGAQ7L523 313 aa18.2■□□□□ 0.5
HOXD3-201ENST00000249440 CLEC10AQ8IUN9 316 aa18.2■□□□□ 0.5
HOXD3-201ENST00000249440 HAS1Q92839 578 aa18.2■□□□□ 0.5
HOXD3-201ENST00000249440 DDX4Q9NQI0 724 aaKnown RBP18.2■□□□□ 0.5
HOXD3-201ENST00000249440 SNX12Q9UMY4 172 aa18.2■□□□□ 0.5
HOXD3-201ENST00000249440 MYH4Q9Y623 1939 aa18.19■□□□□ 0.5
HOXD3-201ENST00000249440 F8W031 263 aaPredicted RBP18.19■□□□□ 0.5
HOXD3-201ENST00000249440 ZNF185O15231 689 aa18.19■□□□□ 0.5
HOXD3-201ENST00000249440 PPP1R11O60927 126 aaPredicted RBP18.19■□□□□ 0.5
HOXD3-201ENST00000249440 N4BP1O75113 896 aaKnown RBP18.19■□□□□ 0.5
HOXD3-201ENST00000249440 PRLRP16471 622 aa18.19■□□□□ 0.5
HOXD3-201ENST00000249440 MSL1Q68DK7 614 aa18.19■□□□□ 0.5
HOXD3-201ENST00000249440 CCDC70Q6NSX1 233 aa18.19■□□□□ 0.5
HOXD3-201ENST00000249440 CACNA2D4Q7Z3S7 1137 aa18.19■□□□□ 0.5
HOXD3-201ENST00000249440 SP8Q8IXZ3 490 aa18.19■□□□□ 0.5
HOXD3-201ENST00000249440 TANGO6Q9C0B7 1094 aa18.19■□□□□ 0.5
HOXD3-201ENST00000249440 PSTPIP2Q9H939 334 aa18.19■□□□□ 0.5
HOXD3-201ENST00000249440 KDM3AQ9Y4C1 1321 aa18.19■□□□□ 0.5
HOXD3-201ENST00000249440 LRRC41Q15345 812 aa18.18■□□□□ 0.5
HOXD3-201ENST00000249440 ECM1Q16610 540 aa18.18■□□□□ 0.5
HOXD3-201ENST00000249440 DNAJC19Q96DA6 116 aa18.18■□□□□ 0.5
HOXD3-201ENST00000249440 ALS2CR12Q96Q35 445 aa18.18■□□□□ 0.5
HOXD3-201ENST00000249440 USP40Q9NVE5 1235 aa18.18■□□□□ 0.5
HOXD3-201ENST00000249440 LTBP1Q14766 1721 aa18.18■□□□□ 0.5
HOXD3-201ENST00000249440 LRRC37AA6NMS7 1700 aa18.18■□□□□ 0.5
HOXD3-201ENST00000249440 RIMBP2O15034 1052 aa18.18■□□□□ 0.5
HOXD3-201ENST00000249440 COASYQ13057 564 aa18.18■□□□□ 0.5
HOXD3-201ENST00000249440 MUM1L1Q5H9M0 696 aa18.18■□□□□ 0.5
HOXD3-201ENST00000249440 TTBK2Q6IQ55 1244 aa18.18■□□□□ 0.5
HOXD3-201ENST00000249440 PANK4Q9NVE7 773 aa18.18■□□□□ 0.5
HOXD3-201ENST00000249440 FAN1Q9Y2M0 1017 aa18.18■□□□□ 0.5
HOXD3-201ENST00000249440 COL4A3BPQ9Y5P4 624 aa18.18■□□□□ 0.5
HOXD3-201ENST00000249440 CAPN6Q9Y6Q1 641 aa18.18■□□□□ 0.5
HOXD3-201ENST00000249440 PDE2AO00408 941 aaPredicted RBP18.17■□□□□ 0.5
HOXD3-201ENST00000249440 SHMT1P34896 483 aa18.17■□□□□ 0.5
HOXD3-201ENST00000249440 FAM26FQ5R3K3 315 aa18.17■□□□□ 0.5
HOXD3-201ENST00000249440 HYIQ5T013 277 aa18.17■□□□□ 0.5
HOXD3-201ENST00000249440 SMCR8Q8TEV9 937 aaPredicted RBP18.17■□□□□ 0.5
HOXD3-201ENST00000249440 BAP1Q92560 729 aa18.17■□□□□ 0.5
HOXD3-201ENST00000249440 GLT8D2Q9H1C3 349 aa18.17■□□□□ 0.5
HOXD3-201ENST00000249440 NUCKS1Q9H1E3 243 aaKnown RBP18.17■□□□□ 0.5
HOXD3-201ENST00000249440 KLRG2A4D1S0 409 aaPredicted RBP18.17■□□□□ 0.5
HOXD3-201ENST00000249440 TRAF5O00463 557 aa18.17■□□□□ 0.5
HOXD3-201ENST00000249440 PPEF1O14829 653 aaPredicted RBP18.17■□□□□ 0.5
HOXD3-201ENST00000249440 HLA-DOAP06340 250 aa18.17■□□□□ 0.5
HOXD3-201ENST00000249440 SLC16A2P36021 539 aa18.17■□□□□ 0.5
HOXD3-201ENST00000249440 TNNT3P45378 269 aaPredicted RBP18.17■□□□□ 0.5
HOXD3-201ENST00000249440 ITIH3Q06033 890 aa18.17■□□□□ 0.5
HOXD3-201ENST00000249440 ZSCAN26Q16670 478 aa18.17■□□□□ 0.5
HOXD3-201ENST00000249440 ZCWPW2Q504Y3 356 aa18.17■□□□□ 0.5
HOXD3-201ENST00000249440 CREG2Q8IUH2 290 aa18.17■□□□□ 0.5
HOXD3-201ENST00000249440 GLIS3Q8NEA6 775 aa18.17■□□□□ 0.5
HOXD3-201ENST00000249440 MTMR8Q96EF0 704 aa18.17■□□□□ 0.5
HOXD3-201ENST00000249440 QSER1Q2KHR3 1735 aa18.16■□□□□ 0.5
HOXD3-201ENST00000249440 SSU72P8A0A1W2PR75 194 aa18.16■□□□□ 0.5
HOXD3-201ENST00000249440 USP17L10C9JJH3 530 aa18.16■□□□□ 0.5
HOXD3-201ENST00000249440 MPHOSPH10O00566 681 aaKnown RBP18.16■□□□□ 0.5
HOXD3-201ENST00000249440 MAGEA1P43355 309 aa18.16■□□□□ 0.5
HOXD3-201ENST00000249440 AARSP49588 968 aaKnown RBP eCLIP18.16■□□□□ 0.5
HOXD3-201ENST00000249440 ATP2B2Q01814 1243 aa18.16■□□□□ 0.5
HOXD3-201ENST00000249440 PDXDC1Q6P996 788 aa18.16■□□□□ 0.5
HOXD3-201ENST00000249440 ZC3H12CQ9C0D7 883 aaKnown RBP18.16■□□□□ 0.5
HOXD3-201ENST00000249440 PJA2O43164 708 aa18.16■□□□□ 0.5
HOXD3-201ENST00000249440 GNA14O95837 355 aa18.16■□□□□ 0.5
HOXD3-201ENST00000249440 TCP1P17987 556 aaKnown RBP18.16■□□□□ 0.5
HOXD3-201ENST00000249440 ERCC3P19447 782 aa18.16■□□□□ 0.5
HOXD3-201ENST00000249440 MAPK8IP2Q13387 824 aaPredicted RBP18.16■□□□□ 0.5
HOXD3-201ENST00000249440 CCDC40Q4G0X9 1142 aa18.16■□□□□ 0.5
HOXD3-201ENST00000249440 KCTD1Q719H9 257 aa18.16■□□□□ 0.5
HOXD3-201ENST00000249440 CCDC65Q8IXS2 484 aa18.16■□□□□ 0.5
HOXD3-201ENST00000249440 GOLGA5Q8TBA6 731 aa18.16■□□□□ 0.5
HOXD3-201ENST00000249440 COG1Q8WTW3 980 aa18.16■□□□□ 0.5
HOXD3-201ENST00000249440 CEP63Q96MT8 703 aa18.16■□□□□ 0.5
HOXD3-201ENST00000249440 MLXIPQ9HAP2 919 aa18.16■□□□□ 0.5
HOXD3-201ENST00000249440 ARFGEF1Q9Y6D6 1849 aa18.16■□□□□ 0.5
HOXD3-201ENST00000249440 MOCS3O95396 460 aa18.15■□□□□ 0.5
HOXD3-201ENST00000249440 SSBP05455 408 aaKnown RBP eCLIP18.15■□□□□ 0.5
HOXD3-201ENST00000249440 KCNMA1Q12791 1236 aa18.15■□□□□ 0.5
HOXD3-201ENST00000249440 CCNI2Q6ZMN8 369 aaPredicted RBP18.15■□□□□ 0.5
HOXD3-201ENST00000249440 ZNF572Q7Z3I7 529 aaPredicted RBP18.15■□□□□ 0.5
HOXD3-201ENST00000249440 MMGT1Q8N4V1 131 aa18.15■□□□□ 0.5
HOXD3-201ENST00000249440 CERS5Q8N5B7 392 aa18.15■□□□□ 0.5
HOXD3-201ENST00000249440 CEP72Q9P209 647 aa18.15■□□□□ 0.5
HOXD3-201ENST00000249440 ATF5Q9Y2D1 282 aaPredicted RBP18.15■□□□□ 0.5
HOXD3-201ENST00000249440 ATP6V0A2Q9Y487 856 aa18.15■□□□□ 0.5
HOXD3-201ENST00000249440 GREB1LQ9C091 1923 aaPredicted RBP18.15■□□□□ 0.5
HOXD3-201ENST00000249440 SLC26A4O43511 780 aa18.15■□□□□ 0.5
HOXD3-201ENST00000249440 ACTN2P35609 894 aa18.15■□□□□ 0.5
HOXD3-201ENST00000249440 DDR1Q08345 913 aa18.15■□□□□ 0.5
HOXD3-201ENST00000249440 C2orf54Q08AI8 447 aa18.15■□□□□ 0.5
HOXD3-201ENST00000249440 ASTE1Q2TB18 679 aaPredicted RBP18.15■□□□□ 0.5
HOXD3-201ENST00000249440 SLC9C1Q4G0N8 1177 aa18.15■□□□□ 0.5
HOXD3-201ENST00000249440 SYN2Q92777 582 aaPredicted RBP18.15■□□□□ 0.5
HOXD3-201ENST00000249440 GJA10Q969M2 543 aa18.15■□□□□ 0.5
HOXD3-201ENST00000249440 CCDC17Q96LX7 622 aa18.15■□□□□ 0.5
HOXD3-201ENST00000249440 CWC15Q9P013 229 aaKnown RBP18.15■□□□□ 0.5
Retrieved 100 of 20,778 RNA–protein pairs in 46.5 ms