RNA–Protein interactions for RNA: ENST00000238112.7

CPSF3-201, Transcript of cleavage and polyadenylation specific factor 3, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene CPSF3, Length 2,345 nt, Biotype protein coding, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CPSF3-201ENST00000238112 TRAF5O00463 557 aa20.71■□□□□ 0.91
CPSF3-201ENST00000238112 PJA2O43164 708 aa20.71■□□□□ 0.91
CPSF3-201ENST00000238112 SSBP05455 408 aaKnown RBP eCLIP20.71■□□□□ 0.91
CPSF3-201ENST00000238112 GGCXP38435 758 aa20.71■□□□□ 0.91
CPSF3-201ENST00000238112 GFPT1Q06210 699 aaPredicted RBP20.71■□□□□ 0.91
CPSF3-201ENST00000238112 ZNF543Q08ER8 600 aa20.71■□□□□ 0.91
CPSF3-201ENST00000238112 CRY2Q49AN0 593 aa20.71■□□□□ 0.91
CPSF3-201ENST00000238112 CLEC10AQ8IUN9 316 aa20.71■□□□□ 0.91
CPSF3-201ENST00000238112 CERKQ8TCT0 537 aa20.71■□□□□ 0.91
CPSF3-201ENST00000238112 NOX5Q96PH1 765 aa20.71■□□□□ 0.91
CPSF3-201ENST00000238112 PANK4Q9NVE7 773 aa20.71■□□□□ 0.91
CPSF3-201ENST00000238112 ZC3H4Q9UPT8 1303 aaKnown RBP20.71■□□□□ 0.91
CPSF3-201ENST00000238112 PAFAH1B1P43034 410 aa20.7■□□□□ 0.9
CPSF3-201ENST00000238112 MATR3P43243 847 aaKnown RBP eCLIP20.7■□□□□ 0.9
CPSF3-201ENST00000238112 MRPL12P52815 198 aaKnown RBP20.7■□□□□ 0.9
CPSF3-201ENST00000238112 GABPAQ06546 454 aa20.7■□□□□ 0.9
CPSF3-201ENST00000238112 MAPK8IP2Q13387 824 aaPredicted RBP20.7■□□□□ 0.9
CPSF3-201ENST00000238112 ECM1Q16610 540 aa20.7■□□□□ 0.9
CPSF3-201ENST00000238112 FAM26FQ5R3K3 315 aa20.7■□□□□ 0.9
CPSF3-201ENST00000238112 ARHGAP27Q6ZUM4 889 aa20.7■□□□□ 0.9
CPSF3-201ENST00000238112 CCDC155Q8N6L0 562 aa20.7■□□□□ 0.9
CPSF3-201ENST00000238112 PSMB7Q99436 277 aa20.7■□□□□ 0.9
CPSF3-201ENST00000238112 LRRC1Q9BTT6 524 aa20.7■□□□□ 0.9
CPSF3-201ENST00000238112 NUCKS1Q9H1E3 243 aaKnown RBP20.7■□□□□ 0.9
CPSF3-201ENST00000238112 IGKV6D-41A0A0C4DH26 115 aa20.7■□□□□ 0.9
CPSF3-201ENST00000238112 GOLGA6BA6NDN3 693 aa20.7■□□□□ 0.9
CPSF3-201ENST00000238112 C6orf229H3BNL8 230 aa20.7■□□□□ 0.9
CPSF3-201ENST00000238112 CXCR5P32302 372 aa20.7■□□□□ 0.9
CPSF3-201ENST00000238112 NAP1L1P55209 391 aaKnown RBP20.7■□□□□ 0.9
CPSF3-201ENST00000238112 RASSF7Q02833 373 aa20.7■□□□□ 0.9
CPSF3-201ENST00000238112 SLC9C1Q4G0N8 1177 aa20.7■□□□□ 0.9
CPSF3-201ENST00000238112 ANKRD13CQ8N6S4 541 aa20.7■□□□□ 0.9
CPSF3-201ENST00000238112 TBC1D16Q8TBP0 767 aa20.7■□□□□ 0.9
CPSF3-201ENST00000238112 AENQ8WTP8 325 aaKnown RBP20.7■□□□□ 0.9
CPSF3-201ENST00000238112 RIN2Q8WYP3 895 aaPredicted RBP20.7■□□□□ 0.9
CPSF3-201ENST00000238112 HAS1Q92839 578 aa20.7■□□□□ 0.9
CPSF3-201ENST00000238112 DNAJC19Q96DA6 116 aa20.7■□□□□ 0.9
CPSF3-201ENST00000238112 NT5C3AQ9H0P0 336 aa20.7■□□□□ 0.9
CPSF3-201ENST00000238112 CEP72Q9P209 647 aa20.7■□□□□ 0.9
CPSF3-201ENST00000238112 POLLQ9UGP5 575 aa20.7■□□□□ 0.9
CPSF3-201ENST00000238112 PCDHA12Q9UN75 941 aa20.7■□□□□ 0.9
CPSF3-201ENST00000238112 KDM3AQ9Y4C1 1321 aa20.7■□□□□ 0.9
CPSF3-201ENST00000238112 NHSQ6T4R5 1651 aa20.69■□□□□ 0.9
CPSF3-201ENST00000238112 GCFC2P16383 781 aaKnown RBP20.69■□□□□ 0.9
CPSF3-201ENST00000238112 CLK2P49760 499 aaKnown RBP20.69■□□□□ 0.9
CPSF3-201ENST00000238112 KCNMA1Q12791 1236 aa20.69■□□□□ 0.9
CPSF3-201ENST00000238112 ASTE1Q2TB18 679 aaPredicted RBP20.69■□□□□ 0.9
CPSF3-201ENST00000238112 ZCWPW2Q504Y3 356 aa20.69■□□□□ 0.9
CPSF3-201ENST00000238112 NLRC4Q9NPP4 1024 aa20.69■□□□□ 0.9
CPSF3-201ENST00000238112 BBOX1O75936 387 aa20.69■□□□□ 0.9
CPSF3-201ENST00000238112 SLC1A4P43007 532 aa20.69■□□□□ 0.9
CPSF3-201ENST00000238112 GTF2IP78347 998 aa20.69■□□□□ 0.9
CPSF3-201ENST00000238112 EZH2Q15910 746 aaKnown RBP20.69■□□□□ 0.9
CPSF3-201ENST00000238112 SFMBT2Q5VUG0 894 aa20.69■□□□□ 0.9
CPSF3-201ENST00000238112 RNF10Q8N5U6 811 aaKnown RBP20.69■□□□□ 0.9
CPSF3-201ENST00000238112 HINFPQ9BQA5 517 aa20.69■□□□□ 0.9
CPSF3-201ENST00000238112 LUC7LQ9NQ29 371 aaKnown RBP20.69■□□□□ 0.9
CPSF3-201ENST00000238112 PODXL2Q9NZ53 605 aa20.69■□□□□ 0.9
CPSF3-201ENST00000238112 PPP1R11O60927 126 aaPredicted RBP20.68■□□□□ 0.9
CPSF3-201ENST00000238112 SND1Q7KZF4 910 aaKnown RBP eCLIP20.68■□□□□ 0.9
CPSF3-201ENST00000238112 CCDC65Q8IXS2 484 aa20.68■□□□□ 0.9
CPSF3-201ENST00000238112 HDAC7Q8WUI4 952 aa20.68■□□□□ 0.9
CPSF3-201ENST00000238112 GJA10Q969M2 543 aa20.68■□□□□ 0.9
CPSF3-201ENST00000238112 CEP63Q96MT8 703 aa20.68■□□□□ 0.9
CPSF3-201ENST00000238112 TSKSQ9UJT2 592 aa20.68■□□□□ 0.9
CPSF3-201ENST00000238112 NCK2O43639 380 aa20.67■□□□□ 0.9
CPSF3-201ENST00000238112 GNA14O95837 355 aa20.67■□□□□ 0.9
CPSF3-201ENST00000238112 HGSNATQ68CP4 663 aa20.67■□□□□ 0.9
CPSF3-201ENST00000238112 TTBK2Q6IQ55 1244 aa20.67■□□□□ 0.9
CPSF3-201ENST00000238112 SRLQ86TD4 932 aa20.67■□□□□ 0.9
CPSF3-201ENST00000238112 SYN2Q92777 582 aaPredicted RBP20.67■□□□□ 0.9
CPSF3-201ENST00000238112 NAP1L4Q99733 375 aaKnown RBP20.67■□□□□ 0.9
CPSF3-201ENST00000238112 LSM14BQ9BX40 385 aaKnown RBP20.67■□□□□ 0.9
CPSF3-201ENST00000238112 PSTPIP2Q9H939 334 aa20.67■□□□□ 0.9
CPSF3-201ENST00000238112 TBC1D7Q9P0N9 293 aa20.67■□□□□ 0.9
CPSF3-201ENST00000238112 SWAP70Q9UH65 585 aa20.67■□□□□ 0.9
CPSF3-201ENST00000238112 DMGDHQ9UI17 866 aaKnown RBP20.67■□□□□ 0.9
CPSF3-201ENST00000238112 SERPINB13Q9UIV8 391 aa20.67■□□□□ 0.9
CPSF3-201ENST00000238112 SALL4Q9UJQ4 1053 aa20.67■□□□□ 0.9
CPSF3-201ENST00000238112 ZBTB5O15062 677 aa20.67■□□□□ 0.9
CPSF3-201ENST00000238112 BUB1O43683 1085 aa20.67■□□□□ 0.9
CPSF3-201ENST00000238112 SERPING1P05155 500 aa20.67■□□□□ 0.9
CPSF3-201ENST00000238112 FAM83BQ5T0W9 1011 aa20.67■□□□□ 0.9
CPSF3-201ENST00000238112 GPATCH4Q5T3I0 446 aaKnown RBP20.67■□□□□ 0.9
CPSF3-201ENST00000238112 MTMR8Q96EF0 704 aa20.67■□□□□ 0.9
CPSF3-201ENST00000238112 F8W031 263 aaPredicted RBP20.66■□□□□ 0.9
CPSF3-201ENST00000238112 RBAK-RBAKDNI3L0D1 243 aa20.66■□□□□ 0.9
CPSF3-201ENST00000238112 AGPSO00116 658 aa20.66■□□□□ 0.9
CPSF3-201ENST00000238112 SLC16A2P36021 539 aa20.66■□□□□ 0.9
CPSF3-201ENST00000238112 LRRC31Q6UY01 552 aa20.66■□□□□ 0.9
CPSF3-201ENST00000238112 SMARCAL1Q9NZC9 954 aa20.66■□□□□ 0.9
CPSF3-201ENST00000238112 STIM2Q9P246 746 aa20.66■□□□□ 0.9
CPSF3-201ENST00000238112 FEZ2Q9UHY8 353 aaPredicted RBP20.66■□□□□ 0.9
CPSF3-201ENST00000238112 RRP15Q9Y3B9 282 aaKnown RBP20.66■□□□□ 0.9
CPSF3-201ENST00000238112 UTP18Q9Y5J1 556 aaKnown RBP eCLIP20.66■□□□□ 0.9
CPSF3-201ENST00000238112 MYO1CO00159 1063 aa20.66■□□□□ 0.9
CPSF3-201ENST00000238112 SERPINB2P05120 415 aa20.66■□□□□ 0.9
CPSF3-201ENST00000238112 SLC7A5Q01650 507 aa20.66■□□□□ 0.9
CPSF3-201ENST00000238112 HYIQ5T013 277 aa20.66■□□□□ 0.9
CPSF3-201ENST00000238112 NELFCDQ8IXH7 590 aa20.66■□□□□ 0.9
Retrieved 100 of 20,778 RNA–protein pairs in 40.9 ms