RNA–Protein interactions for RNA: YOR106W

VAM3, Transcript of Syntaxin-like vacuolar t-SNARE, yeast

Gene VAM3, Length 852 nt, Biotype protein coding.

RNA		Protein				Prediction (catRAPID)		Interaction (RIP-Chip)
Gene	Ensembl Transcript ID	Gene	UniProt Accession	Length	Protein Status	Prediction Score	Prediction z-Score	Detected Interaction
VAM3	YOR106W	TWF1	P53250	332 aa		4.13	□□□□□ -1.75
VAM3	YOR106W	IBD2	P53892	351 aa		4.13	□□□□□ -1.75
VAM3	YOR106W	YLL032C	Q07834	825 aa	Known RBP RIP-Chip data	4.13	□□□□□ -1.75	not detected
VAM3	YOR106W	YPL199C	Q08954	240 aa		4.13	□□□□□ -1.75
VAM3	YOR106W	THP3	Q12049	470 aa	Known RBP	4.13	□□□□□ -1.75
VAM3	YOR106W	PRE5	P40302	234 aa	Known RBP	4.12	□□□□□ -1.75
VAM3	YOR106W	YGL108C	P53139	140 aa		4.12	□□□□□ -1.75
VAM3	YOR106W	ARE2	P53629	642 aa	Known RBP	4.12	□□□□□ -1.75
VAM3	YOR106W	PNG1	Q02890	363 aa		4.12	□□□□□ -1.75
VAM3	YOR106W	ODC1	Q03028	310 aa		4.12	□□□□□ -1.75
VAM3	YOR106W	ERV2	Q12284	196 aa		4.12	□□□□□ -1.75
VAM3	YOR106W	SUP35	P05453	685 aa	Known RBP	4.11	□□□□□ -1.75
VAM3	YOR106W	ARO2	P28777	376 aa	Known RBP	4.11	□□□□□ -1.75
VAM3	YOR106W	KEL1	P38853	1164 aa	Known RBP	4.11	□□□□□ -1.75
VAM3	YOR106W	YEL057C	P39983	233 aa		4.11	□□□□□ -1.75
VAM3	YOR106W	ART5	P53244	586 aa	Known RBP	4.11	□□□□□ -1.75
VAM3	YOR106W	YLR108C	Q12259	485 aa		4.11	□□□□□ -1.75
VAM3	YOR106W	MET8	P15807	274 aa		4.1	□□□□□ -1.75
VAM3	YOR106W	CPR4	P25334	318 aa		4.1	□□□□□ -1.75
VAM3	YOR106W	IMP2'	P32351	346 aa		4.1	□□□□□ -1.75
VAM3	YOR106W	SDT1	P53078	280 aa		4.1	□□□□□ -1.75
VAM3	YOR106W	GOR1	P53839	350 aa		4.1	□□□□□ -1.75
VAM3	YOR106W	ATG29	Q12092	213 aa		4.1	□□□□□ -1.75
VAM3	YOR106W	RHO2	P06781	192 aa		4.09	□□□□□ -1.75
VAM3	YOR106W	AFG1	P32317	509 aa		4.09	□□□□□ -1.75
VAM3	YOR106W	REC114	P32841	428 aa		4.09	□□□□□ -1.75
VAM3	YOR106W	SDH3	P33421	198 aa		4.09	□□□□□ -1.75
VAM3	YOR106W	CMC1	P36064	111 aa		4.09	□□□□□ -1.75
VAM3	YOR106W	DED81	P38707	554 aa	Known RBP	4.09	□□□□□ -1.75
VAM3	YOR106W	YMR147W	P40218	223 aa	Known RBP	4.09	□□□□□ -1.75
VAM3	YOR106W	SPO22	P40511	975 aa		4.09	□□□□□ -1.75
VAM3	YOR106W	WWM1	P43582	211 aa	Known RBP	4.09	□□□□□ -1.75
VAM3	YOR106W	NCS2	P53923	493 aa	Predicted RBP	4.09	□□□□□ -1.75
VAM3	YOR106W	MRD1	Q06106	887 aa	Known RBP	4.09	□□□□□ -1.75
VAM3	YOR106W	IMH1	Q06704	911 aa	Known RBP	4.09	□□□□□ -1.75
VAM3	YOR106W	TSR1	Q07381	788 aa	Known RBP	4.09	□□□□□ -1.75
VAM3	YOR106W	MUM3	Q08750	479 aa		4.09	□□□□□ -1.75
VAM3	YOR106W	SAM1	P10659	382 aa	Known RBP	4.08	□□□□□ -1.76
VAM3	YOR106W	SAM2	P19358	384 aa	Known RBP	4.08	□□□□□ -1.76
VAM3	YOR106W	RAD14	P28519	371 aa		4.08	□□□□□ -1.76
VAM3	YOR106W	YIM1	P28625	365 aa		4.08	□□□□□ -1.76
VAM3	YOR106W	PTH1	P38876	190 aa	Known RBP	4.08	□□□□□ -1.76
VAM3	YOR106W	FAA2	P39518	744 aa		4.08	□□□□□ -1.76
VAM3	YOR106W	MRP51	Q02950	344 aa		4.08	□□□□□ -1.76
VAM3	YOR106W	SPB1	P25582	841 aa	Predicted RBP	4.07	□□□□□ -1.76
VAM3	YOR106W	GYP6	P32806	458 aa		4.07	□□□□□ -1.76
VAM3	YOR106W	YCR041W	P37265	110 aa		4.07	□□□□□ -1.76
VAM3	YOR106W	VID24	P38263	362 aa		4.07	□□□□□ -1.76
VAM3	YOR106W	ARF3	P40994	183 aa	RIP-Chip data	4.07	□□□□□ -1.76	not detected
VAM3	YOR106W	SSN8	P47821	323 aa		4.07	□□□□□ -1.76
VAM3	YOR106W	YGR149W	P48236	432 aa		4.07	□□□□□ -1.76
VAM3	YOR106W	RMD9	P53140	646 aa	Known RBP	4.07	□□□□□ -1.76
VAM3	YOR106W	TOF1	P53840	1238 aa		4.07	□□□□□ -1.76
VAM3	YOR106W	RRG7	Q08774	242 aa	Predicted RBP	4.07	□□□□□ -1.76
VAM3	YOR106W	RIM20	Q12033	661 aa		4.07	□□□□□ -1.76
VAM3	YOR106W	TMS1	Q12116	473 aa		4.07	□□□□□ -1.76
VAM3	YOR106W	ATP10	P18496	279 aa		4.06	□□□□□ -1.76
VAM3	YOR106W	SPS22	P25380	463 aa		4.06	□□□□□ -1.76
VAM3	YOR106W	IDH2	P28241	369 aa	Known RBP	4.06	□□□□□ -1.76
VAM3	YOR106W	SEC66	P33754	206 aa		4.06	□□□□□ -1.76
VAM3	YOR106W	PMT1	P33775	817 aa		4.06	□□□□□ -1.76
VAM3	YOR106W	MIX23	P38162	196 aa		4.06	□□□□□ -1.76
VAM3	YOR106W	HXT14	P42833	540 aa		4.06	□□□□□ -1.76
VAM3	YOR106W	TRS85	P46944	698 aa		4.06	□□□□□ -1.76
VAM3	YOR106W	DSL1	P53847	754 aa		4.06	□□□□□ -1.76
VAM3	YOR106W	TIM10	P87108	93 aa		4.06	□□□□□ -1.76
VAM3	YOR106W	THI2	P38141	450 aa		4.05	□□□□□ -1.76
VAM3	YOR106W	RRT2	P38332	387 aa		4.05	□□□□□ -1.76
VAM3	YOR106W	REE1	P40893	198 aa		4.05	□□□□□ -1.76
VAM3	YOR106W	OST1	P41543	476 aa	Known RBP	4.05	□□□□□ -1.76
VAM3	YOR106W	PCP1	P53259	346 aa		4.05	□□□□□ -1.76
VAM3	YOR106W	TAP42	Q04372	366 aa		4.05	□□□□□ -1.76
VAM3	YOR106W	TMC1	Q08422	150 aa	Predicted RBP	4.05	□□□□□ -1.76
VAM3	YOR106W	ARG3	P05150	338 aa		4.04	□□□□□ -1.76
VAM3	YOR106W	CLN3	P13365	580 aa		4.04	□□□□□ -1.76
VAM3	YOR106W	STB6	P36085	766 aa		4.04	□□□□□ -1.76
VAM3	YOR106W	NCA3	P46955	337 aa		4.04	□□□□□ -1.76
VAM3	YOR106W	YIP1	P53039	248 aa		4.04	□□□□□ -1.76
VAM3	YOR106W	MRPL35	Q06678	367 aa		4.04	□□□□□ -1.76
VAM3	YOR106W	YDL121C	Q07541	149 aa		4.04	□□□□□ -1.76
VAM3	YOR106W	HRT3	Q12347	344 aa		4.04	□□□□□ -1.76
VAM3	YOR106W	SPS4	P09937	338 aa		4.03	□□□□□ -1.76
VAM3	YOR106W	ISY1	P21374	235 aa	Predicted RBP	4.03	□□□□□ -1.76
VAM3	YOR106W	GPI10	P30777	616 aa		4.03	□□□□□ -1.76
VAM3	YOR106W	SWD3	P38123	315 aa		4.03	□□□□□ -1.76
VAM3	YOR106W	RIB5	P38145	238 aa		4.03	□□□□□ -1.76
VAM3	YOR106W	MET18	P40469	1032 aa		4.03	□□□□□ -1.76
VAM3	YOR106W	LAM5	P43560	674 aa		4.03	□□□□□ -1.76
VAM3	YOR106W	GIR2	Q03768	265 aa	Predicted RBP	4.03	□□□□□ -1.76
VAM3	YOR106W	RRD2	Q12461	358 aa		4.03	□□□□□ -1.76
VAM3	YOR106W	PET123	P17558	318 aa		4.02	□□□□□ -1.77
VAM3	YOR106W	UTP9	P38882	575 aa	Known RBP	4.02	□□□□□ -1.77
VAM3	YOR106W	MST28	P39552	234 aa		4.02	□□□□□ -1.77
VAM3	YOR106W	PRM5	P40476	318 aa		4.02	□□□□□ -1.77
VAM3	YOR106W	TFG2	P41896	400 aa	Predicted RBP	4.02	□□□□□ -1.77
VAM3	YOR106W	YGL039W	P53183	348 aa	Known RBP	4.02	□□□□□ -1.77
VAM3	YOR106W	RQC1	Q05468	723 aa	Known RBP	4.02	□□□□□ -1.77
VAM3	YOR106W	PKH2	Q12236	1081 aa	Known RBP	4.02	□□□□□ -1.77
VAM3	YOR106W	MED1	Q12321	566 aa		4.02	□□□□□ -1.77
VAM3	YOR106W	APE2	P32454	952 aa	Known RBP	4.01	□□□□□ -1.77

Retrieved 100 of 5,963 RNA–protein pairs in 93.9 ms