RNA–Protein interactions for RNA: YLR417W

VPS36, Transcript of Component of the ESCRT-II complex, yeast

Gene VPS36, Length 1,701 nt, Biotype protein coding.

RNA		Protein				Prediction (catRAPID)		Interaction (RIP-Chip)
Gene	Ensembl Transcript ID	Gene	UniProt Accession	Length	Protein Status	Prediction Score	Prediction z-Score	Detected Interaction
VPS36	YLR417W	YPT1	P01123	206 aa	Known RBP	4.8	□□□□□ -1.64
VPS36	YLR417W	LPD1	P09624	499 aa	Known RBP	4.8	□□□□□ -1.64
VPS36	YLR417W	KRR1	P25586	316 aa	Predicted RBP	4.8	□□□□□ -1.64
VPS36	YLR417W	ATF1	P40353	525 aa		4.8	□□□□□ -1.64
VPS36	YLR417W	CSM2	P40465	213 aa		4.8	□□□□□ -1.64
VPS36	YLR417W	GPI1	P53306	609 aa		4.8	□□□□□ -1.64
VPS36	YLR417W	ESBP6	P53918	673 aa		4.8	□□□□□ -1.64
VPS36	YLR417W	SAM50	P53969	484 aa		4.8	□□□□□ -1.64
VPS36	YLR417W	MRPL1	Q04599	285 aa		4.8	□□□□□ -1.64
VPS36	YLR417W	YDR286C	Q05530	114 aa		4.8	□□□□□ -1.64
VPS36	YLR417W	PHO92	Q06390	306 aa		4.8	□□□□□ -1.64
VPS36	YLR417W	YLL032C	Q07834	825 aa	Known RBP RIP-Chip data	4.8	□□□□□ -1.64	not detected
VPS36	YLR417W	DIS3	Q08162	1001 aa	Known RBP	4.8	□□□□□ -1.64
VPS36	YLR417W	THI20	Q08224	551 aa		4.8	□□□□□ -1.64
VPS36	YLR417W	FRE6	Q12473	712 aa		4.8	□□□□□ -1.64
VPS36	YLR417W	MTR10	Q99189	972 aa		4.8	□□□□□ -1.64
VPS36	YLR417W	SEC63	P14906	663 aa		4.79	□□□□□ -1.64
VPS36	YLR417W	MDM10	P18409	493 aa		4.79	□□□□□ -1.64
VPS36	YLR417W	BEM1	P29366	551 aa		4.79	□□□□□ -1.64
VPS36	YLR417W	RFC3	P38629	340 aa		4.79	□□□□□ -1.64
VPS36	YLR417W	VHS2	P40463	436 aa		4.79	□□□□□ -1.64
VPS36	YLR417W	BNA3	P47039	444 aa	Known RBP	4.79	□□□□□ -1.64
VPS36	YLR417W	BTN2	P53286	410 aa		4.79	□□□□□ -1.64
VPS36	YLR417W	SLD5	Q03406	294 aa		4.79	□□□□□ -1.64
VPS36	YLR417W	MSS11	Q03825	758 aa		4.79	□□□□□ -1.64
VPS36	YLR417W	IVY1	Q04934	453 aa		4.79	□□□□□ -1.64
VPS36	YLR417W	PGC1	Q08959	321 aa		4.79	□□□□□ -1.64
VPS36	YLR417W	KEL3	Q08979	651 aa	Predicted RBP	4.79	□□□□□ -1.64
VPS36	YLR417W	LEU4	P06208	619 aa	Known RBP	4.78	□□□□□ -1.64
VPS36	YLR417W	RPL42A	P0CX27	106 aa	Known RBP	4.78	□□□□□ -1.64
VPS36	YLR417W	RPL42B	P0CX28	106 aa	Known RBP	4.78	□□□□□ -1.64
VPS36	YLR417W	VPS17	P32913	551 aa		4.78	□□□□□ -1.64
VPS36	YLR417W	CCT2	P39076	527 aa	Known RBP	4.78	□□□□□ -1.64
VPS36	YLR417W	KTR5	P53966	522 aa	Predicted RBP	4.78	□□□□□ -1.64
VPS36	YLR417W	YPL107W	Q02873	248 aa		4.78	□□□□□ -1.64
VPS36	YLR417W	HSP31	Q04432	237 aa		4.78	□□□□□ -1.64
VPS36	YLR417W	MDM30	Q05930	598 aa		4.78	□□□□□ -1.64
VPS36	YLR417W	RHB1	P25378	209 aa		4.77	□□□□□ -1.65
VPS36	YLR417W	ZTA1	P38230	334 aa	Known RBP	4.77	□□□□□ -1.65
VPS36	YLR417W	OSH3	P38713	996 aa	Known RBP	4.77	□□□□□ -1.65
VPS36	YLR417W	FAU1	P40099	211 aa		4.77	□□□□□ -1.65
VPS36	YLR417W	YTA12	P40341	825 aa		4.77	□□□□□ -1.65
VPS36	YLR417W	SCD6	P45978	349 aa	Known RBP RIP-Chip data	4.77	□□□□□ -1.65	RIP-Chip
VPS36	YLR417W	YJR011C	P47086	261 aa	Predicted RBP	4.77	□□□□□ -1.65
VPS36	YLR417W	YGL082W	P53155	381 aa		4.77	□□□□□ -1.65
VPS36	YLR417W	BSC1	Q12140	328 aa		4.77	□□□□□ -1.65
VPS36	YLR417W	UBX3	Q12229	455 aa		4.77	□□□□□ -1.65
VPS36	YLR417W	STH1	P32597	1359 aa		4.77	□□□□□ -1.65
VPS36	YLR417W	YCP4	P25349	247 aa	Known RBP	4.77	□□□□□ -1.65
VPS36	YLR417W	ACH1	P32316	526 aa		4.77	□□□□□ -1.65
VPS36	YLR417W	MIC60	P36112	540 aa		4.77	□□□□□ -1.65
VPS36	YLR417W	DAD2	P36162	133 aa		4.77	□□□□□ -1.65
VPS36	YLR417W	YER130C	P39959	443 aa		4.77	□□□□□ -1.65
VPS36	YLR417W	MDV1	P47025	714 aa		4.77	□□□□□ -1.65
VPS36	YLR417W	MLC1	P53141	149 aa		4.77	□□□□□ -1.65
VPS36	YLR417W	YMR254C	Q04838	102 aa		4.77	□□□□□ -1.65
VPS36	YLR417W	BNA5	Q05979	453 aa		4.77	□□□□□ -1.65
VPS36	YLR417W	YLR456W	Q06199	204 aa		4.77	□□□□□ -1.65
VPS36	YLR417W	NFI1	Q12216	726 aa		4.77	□□□□□ -1.65
VPS36	YLR417W	LSP1	Q12230	341 aa	Known RBP	4.77	□□□□□ -1.65
VPS36	YLR417W	SCEI	P03882	235 aa		4.76	□□□□□ -1.65
VPS36	YLR417W	YML002W	P0CF17	737 aa		4.76	□□□□□ -1.65
VPS36	YLR417W	EXO70	P19658	623 aa		4.76	□□□□□ -1.65
VPS36	YLR417W	MGR1	P25573	417 aa		4.76	□□□□□ -1.65
VPS36	YLR417W	TOA1	P32773	286 aa		4.76	□□□□□ -1.65
VPS36	YLR417W	ECM15	P35195	104 aa		4.76	□□□□□ -1.65
VPS36	YLR417W	LAS1	P36146	502 aa	Predicted RBP	4.76	□□□□□ -1.65
VPS36	YLR417W	ASC1	P38011	319 aa	Known RBP	4.76	□□□□□ -1.65
VPS36	YLR417W	GDT1	P38301	280 aa	Predicted RBP	4.76	□□□□□ -1.65
VPS36	YLR417W	EFM2	P38347	419 aa		4.76	□□□□□ -1.65
VPS36	YLR417W	SAS2	P40963	338 aa		4.76	□□□□□ -1.65
VPS36	YLR417W	DSL1	P53847	754 aa		4.76	□□□□□ -1.65
VPS36	YLR417W	RHO5	P53879	331 aa	Known RBP	4.76	□□□□□ -1.65
VPS36	YLR417W	BET4	Q00618	327 aa		4.76	□□□□□ -1.65
VPS36	YLR417W	CUE5	Q08412	411 aa	Known RBP	4.76	□□□□□ -1.65
VPS36	YLR417W	YLR278C	Q05854	1341 aa		4.76	□□□□□ -1.65
VPS36	YLR417W	TRM732	Q03496	1420 aa		4.75	□□□□□ -1.65
VPS36	YLR417W	CAR1	P00812	333 aa	Known RBP	4.75	□□□□□ -1.65
VPS36	YLR417W	ARO3	P14843	370 aa	Known RBP	4.75	□□□□□ -1.65
VPS36	YLR417W	PTP1	P25044	335 aa		4.75	□□□□□ -1.65
VPS36	YLR417W	BUB3	P26449	341 aa		4.75	□□□□□ -1.65
VPS36	YLR417W	YNK1	P36010	153 aa	Known RBP	4.75	□□□□□ -1.65
VPS36	YLR417W	GND1	P38720	489 aa	Known RBP	4.75	□□□□□ -1.65
VPS36	YLR417W	SPC97	P38863	823 aa		4.75	□□□□□ -1.65
VPS36	YLR417W	PCI8	P40512	444 aa		4.75	□□□□□ -1.65
VPS36	YLR417W	YIR016W	P40572	265 aa		4.75	□□□□□ -1.65
VPS36	YLR417W	GUF1	P46943	645 aa		4.75	□□□□□ -1.65
VPS36	YLR417W	TDA7	P53882	636 aa	Predicted RBP	4.75	□□□□□ -1.65
VPS36	YLR417W	OCA2	P53949	197 aa		4.75	□□□□□ -1.65
VPS36	YLR417W	STP1	Q00947	519 aa		4.75	□□□□□ -1.65
VPS36	YLR417W	SMC4	Q12267	1418 aa		4.75	□□□□□ -1.65
VPS36	YLR417W	HSL1	P34244	1518 aa		4.75	□□□□□ -1.65
VPS36	YLR417W	TY1B-A	O13527	1196 aa	Known RBP	4.75	□□□□□ -1.65
VPS36	YLR417W	RPL6B	P05739	176 aa	Known RBP	4.75	□□□□□ -1.65
VPS36	YLR417W	SEC62	P21825	274 aa		4.75	□□□□□ -1.65
VPS36	YLR417W	PPZ1	P26570	692 aa		4.75	□□□□□ -1.65
VPS36	YLR417W	RAD24	P32641	659 aa		4.75	□□□□□ -1.65
VPS36	YLR417W	RRP3	P38712	501 aa	Known RBP	4.75	□□□□□ -1.65
VPS36	YLR417W	RPL6A	Q02326	176 aa	Known RBP	4.75	□□□□□ -1.65
VPS36	YLR417W	PRP42	Q03776	544 aa	Known RBP	4.75	□□□□□ -1.65

Retrieved 100 of 5,963 RNA–protein pairs in 13.8 ms