RNA–Protein interactions for RNA: YDR330W

UBX5, Transcript of UBX domain-containing protein that interacts with Cdc48p, yeast

Gene UBX5, Length 1,503 nt, Biotype protein coding.

RNA		Protein				Prediction (catRAPID)		Interaction (RIP-Chip)
Gene	Ensembl Transcript ID	Gene	UniProt Accession	Length	Protein Status	Prediction Score	Prediction z-Score	Detected Interaction
UBX5	YDR330W	PUP3	P25451	205 aa	Known RBP	3.85	□□□□□ -1.79
UBX5	YDR330W	IMG1	P25626	169 aa		3.85	□□□□□ -1.79
UBX5	YDR330W	YMC1	P32331	307 aa		3.85	□□□□□ -1.79
UBX5	YDR330W	MUD1	P32605	298 aa	Known RBP	3.85	□□□□□ -1.79
UBX5	YDR330W	ECM32	P32644	1121 aa	Known RBP	3.85	□□□□□ -1.79
UBX5	YDR330W	COT1	P32798	439 aa		3.85	□□□□□ -1.79
UBX5	YDR330W	GCS1	P35197	352 aa		3.85	□□□□□ -1.79
UBX5	YDR330W	STB6	P36085	766 aa		3.85	□□□□□ -1.79
UBX5	YDR330W	TVP38	P36164	337 aa		3.85	□□□□□ -1.79
UBX5	YDR330W	APD1	P38281	316 aa		3.85	□□□□□ -1.79
UBX5	YDR330W	ICS2	P38284	255 aa		3.85	□□□□□ -1.79
UBX5	YDR330W	RCK2	P38623	610 aa		3.85	□□□□□ -1.79
UBX5	YDR330W	APE4	P38821	490 aa		3.85	□□□□□ -1.79
UBX5	YDR330W	VPS41	P38959	992 aa		3.85	□□□□□ -1.79
UBX5	YDR330W	JEM1	P40358	645 aa		3.85	□□□□□ -1.79
UBX5	YDR330W	YIL166C	P40445	542 aa		3.85	□□□□□ -1.79
UBX5	YDR330W	SGF73	P53165	657 aa		3.85	□□□□□ -1.79
UBX5	YDR330W	APM1	Q00776	475 aa	Predicted RBP	3.85	□□□□□ -1.79
UBX5	YDR330W	MRS2	Q01926	470 aa		3.85	□□□□□ -1.79
UBX5	YDR330W	ERB1	Q04660	807 aa	Known RBP	3.85	□□□□□ -1.79
UBX5	YDR330W	RLM1	Q12224	676 aa		3.85	□□□□□ -1.79
UBX5	YDR330W	ERP3	Q12403	225 aa		3.85	□□□□□ -1.79
UBX5	YDR330W	SEC39	Q12745	709 aa		3.85	□□□□□ -1.79
UBX5	YDR330W	CDC33	P07260	213 aa	Known RBP	3.85	□□□□□ -1.79
UBX5	YDR330W	VMA2	P16140	517 aa	Known RBP	3.85	□□□□□ -1.79
UBX5	YDR330W	BOS1	P25385	244 aa		3.85	□□□□□ -1.79
UBX5	YDR330W	SEC66	P33754	206 aa		3.85	□□□□□ -1.79
UBX5	YDR330W	PMT1	P33775	817 aa		3.85	□□□□□ -1.79
UBX5	YDR330W	LAS1	P36146	502 aa	Predicted RBP	3.85	□□□□□ -1.79
UBX5	YDR330W	OLA1	P38219	394 aa	Known RBP	3.85	□□□□□ -1.79
UBX5	YDR330W	SPP381	P38282	291 aa	Predicted RBP	3.85	□□□□□ -1.79
UBX5	YDR330W	FTH1	P38310	465 aa		3.85	□□□□□ -1.79
UBX5	YDR330W	HMF1	P40037	129 aa	Known RBP	3.85	□□□□□ -1.79
UBX5	YDR330W	LCP5	P40079	357 aa	Predicted RBP	3.85	□□□□□ -1.79
UBX5	YDR330W	HXT14	P42833	540 aa		3.85	□□□□□ -1.79
UBX5	YDR330W	SAE2	P46946	345 aa		3.85	□□□□□ -1.79
UBX5	YDR330W	NET1	P47035	1189 aa		3.85	□□□□□ -1.79
UBX5	YDR330W	RPC17	P47076	161 aa		3.85	□□□□□ -1.79
UBX5	YDR330W	YPR003C	P53394	754 aa		3.85	□□□□□ -1.79
UBX5	YDR330W	YMR178W	Q03219	274 aa	Known RBP	3.85	□□□□□ -1.79
UBX5	YDR330W	YLR345W	Q06137	509 aa		3.85	□□□□□ -1.79
UBX5	YDR330W	SFH1	Q06168	426 aa		3.85	□□□□□ -1.79
UBX5	YDR330W	SMC5	Q08204	1093 aa		3.85	□□□□□ -1.79
UBX5	YDR330W	IES4	Q08561	116 aa		3.85	□□□□□ -1.79
UBX5	YDR330W	APL5	Q08951	932 aa	Known RBP	3.85	□□□□□ -1.79
UBX5	YDR330W	RIO1	Q12196	484 aa	Known RBP	3.85	□□□□□ -1.79
UBX5	YDR330W	RUD3	Q12234	484 aa	Known RBP	3.85	□□□□□ -1.79
UBX5	YDR330W	YLR462W	O13556	202 aa		3.84	□□□□□ -1.8
UBX5	YDR330W	RAD1	P06777	1100 aa		3.84	□□□□□ -1.8
UBX5	YDR330W	AQY1	P0CD91	305 aa		3.84	□□□□□ -1.8
UBX5	YDR330W	ART10	P18634	518 aa	Known RBP	3.84	□□□□□ -1.8
UBX5	YDR330W	KGD1	P20967	1014 aa	Known RBP	3.84	□□□□□ -1.8
UBX5	YDR330W	STE50	P25344	346 aa		3.84	□□□□□ -1.8
UBX5	YDR330W	YCR051W	P25631	222 aa		3.84	□□□□□ -1.8
UBX5	YDR330W	YME1	P32795	747 aa		3.84	□□□□□ -1.8
UBX5	YDR330W	UBC6	P33296	250 aa	Predicted RBP	3.84	□□□□□ -1.8
UBX5	YDR330W	TIF3	P34167	436 aa	Known RBP	3.84	□□□□□ -1.8
UBX5	YDR330W	YBL055C	P34220	418 aa	Predicted RBP	3.84	□□□□□ -1.8
UBX5	YDR330W	APE3	P37302	537 aa	Known RBP	3.84	□□□□□ -1.8
UBX5	YDR330W	TSC10	P38342	320 aa		3.84	□□□□□ -1.8
UBX5	YDR330W	DBP8	P38719	431 aa		3.84	□□□□□ -1.8
UBX5	YDR330W	YHL049C	P38722	271 aa		3.84	□□□□□ -1.8
UBX5	YDR330W	YEL075C	P39972	122 aa		3.84	□□□□□ -1.8
UBX5	YDR330W	YER189W	P40104	122 aa		3.84	□□□□□ -1.8
UBX5	YDR330W	LTP1	P40347	161 aa		3.84	□□□□□ -1.8
UBX5	YDR330W	YFL064C	P43540	174 aa		3.84	□□□□□ -1.8
UBX5	YDR330W	ART5	P53244	586 aa	Known RBP	3.84	□□□□□ -1.8
UBX5	YDR330W	RTT102	P53330	157 aa		3.84	□□□□□ -1.8
UBX5	YDR330W	PFA5	Q03289	374 aa		3.84	□□□□□ -1.8
UBX5	YDR330W	EMI2	Q04409	500 aa	Known RBP	3.84	□□□□□ -1.8
UBX5	YDR330W	COQ9	Q05779	260 aa		3.84	□□□□□ -1.8
UBX5	YDR330W	STE23	Q06010	1027 aa		3.84	□□□□□ -1.8
UBX5	YDR330W	YLR455W	Q06188	304 aa		3.84	□□□□□ -1.8
UBX5	YDR330W	VTA1	Q06263	330 aa		3.84	□□□□□ -1.8
UBX5	YDR330W	IRC10	Q08118	586 aa		3.84	□□□□□ -1.8
UBX5	YDR330W	CFT2	Q12102	859 aa	Predicted RBP	3.84	□□□□□ -1.8
UBX5	YDR330W	RDL1	Q12305	139 aa	Known RBP	3.84	□□□□□ -1.8
UBX5	YDR330W	PNS1	Q12412	539 aa		3.84	□□□□□ -1.8
UBX5	YDR330W	YBL111C	Q3E7Y5	667 aa		3.84	□□□□□ -1.8
UBX5	YDR330W	ILS1	P09436	1072 aa	Known RBP	3.83	□□□□□ -1.8
UBX5	YDR330W	MRP13	P12686	339 aa		3.83	□□□□□ -1.8
UBX5	YDR330W	CDC42	P19073	191 aa		3.83	□□□□□ -1.8
UBX5	YDR330W	CLB1	P24868	471 aa		3.83	□□□□□ -1.8
UBX5	YDR330W	DAL2	P25335	343 aa		3.83	□□□□□ -1.8
UBX5	YDR330W	DEP1	P31385	405 aa		3.83	□□□□□ -1.8
UBX5	YDR330W	SAC1	P32368	623 aa	Known RBP	3.83	□□□□□ -1.8
UBX5	YDR330W	VPH1	P32563	840 aa	Known RBP	3.83	□□□□□ -1.8
UBX5	YDR330W	DBP7	P36120	742 aa	Known RBP	3.83	□□□□□ -1.8
UBX5	YDR330W	RRT2	P38332	387 aa		3.83	□□□□□ -1.8
UBX5	YDR330W	MMS21	P38632	267 aa		3.83	□□□□□ -1.8
UBX5	YDR330W	HIS2	P38635	335 aa		3.83	□□□□□ -1.8
UBX5	YDR330W	PAC2	P39937	518 aa		3.83	□□□□□ -1.8
UBX5	YDR330W	YTA12	P40341	825 aa		3.83	□□□□□ -1.8
UBX5	YDR330W	YNL320W	P42840	284 aa		3.83	□□□□□ -1.8
UBX5	YDR330W	YJR079W	P47126	109 aa		3.83	□□□□□ -1.8
UBX5	YDR330W	BRO1	P48582	844 aa		3.83	□□□□□ -1.8
UBX5	YDR330W	HSH155	P49955	971 aa	Known RBP	3.83	□□□□□ -1.8
UBX5	YDR330W	ORC5	P50874	479 aa		3.83	□□□□□ -1.8
UBX5	YDR330W	HOS2	P53096	452 aa	Predicted RBP	3.83	□□□□□ -1.8
UBX5	YDR330W	MNP1	P53163	194 aa	Predicted RBP	3.83	□□□□□ -1.8

Retrieved 100 of 5,963 RNA–protein pairs in 37.1 ms