RNA–Protein interactions for RNA: YBR170C

NPL4, Transcript of Substrate-recruiting cofactor of the Cdc48p-Npl4p-Ufd1p segregase, yeast

Gene NPL4, Length 1,743 nt, Biotype protein coding.

RNA		Protein				Prediction (catRAPID)		Interaction (RIP-Chip)
Gene	Ensembl Transcript ID	Gene	UniProt Accession	Length	Protein Status	Prediction Score	Prediction z-Score	Detected Interaction
NPL4	YBR170C	EFM3	P47163	339 aa		4.24	□□□□□ -1.73
NPL4	YBR170C	UBP8	P50102	471 aa		4.24	□□□□□ -1.73
NPL4	YBR170C	IRC10	Q08118	586 aa		4.24	□□□□□ -1.73
NPL4	YBR170C	PFA4	Q12006	378 aa		4.24	□□□□□ -1.73
NPL4	YBR170C	YPR089W	O13585	888 aa		4.24	□□□□□ -1.73
NPL4	YBR170C	PDE2	P06776	526 aa		4.24	□□□□□ -1.73
NPL4	YBR170C	RPB8	P20436	146 aa		4.24	□□□□□ -1.73
NPL4	YBR170C	SRB2	P34162	210 aa		4.24	□□□□□ -1.73
NPL4	YBR170C	STV1	P37296	890 aa		4.24	□□□□□ -1.73
NPL4	YBR170C	LAG1	P38703	411 aa		4.24	□□□□□ -1.73
NPL4	YBR170C	PHO90	P39535	881 aa		4.24	□□□□□ -1.73
NPL4	YBR170C	SOL4	P53315	255 aa		4.24	□□□□□ -1.73
NPL4	YBR170C	COP1	P53622	1201 aa	Known RBP	4.24	□□□□□ -1.73
NPL4	YBR170C	HST1	P53685	503 aa		4.24	□□□□□ -1.73
NPL4	YBR170C	ERV25	P54837	211 aa	Known RBP	4.24	□□□□□ -1.73
NPL4	YBR170C	APM1	Q00776	475 aa	Predicted RBP	4.24	□□□□□ -1.73
NPL4	YBR170C	SMA1	Q02651	245 aa		4.24	□□□□□ -1.73
NPL4	YBR170C	ARP10	Q04549	284 aa		4.24	□□□□□ -1.73
NPL4	YBR170C	NBL1	Q3E7Y6	73 aa		4.24	□□□□□ -1.73
NPL4	YBR170C	SUC2	P00724	532 aa		4.23	□□□□□ -1.73
NPL4	YBR170C	SCEI	P03882	235 aa		4.23	□□□□□ -1.73
NPL4	YBR170C	CCT2	P39076	527 aa	Known RBP	4.23	□□□□□ -1.73
NPL4	YBR170C	ELP2	P42935	788 aa		4.23	□□□□□ -1.73
NPL4	YBR170C	IRC7	P43623	340 aa		4.23	□□□□□ -1.73
NPL4	YBR170C	YPL014W	Q02606	381 aa		4.23	□□□□□ -1.73
NPL4	YBR170C	VTC3	Q02725	835 aa		4.23	□□□□□ -1.73
NPL4	YBR170C	YDL218W	Q07629	317 aa		4.23	□□□□□ -1.73
NPL4	YBR170C	RDR1	Q08904	546 aa		4.23	□□□□□ -1.73
NPL4	YBR170C	RRP36	Q12481	300 aa	Predicted RBP	4.23	□□□□□ -1.73
NPL4	YBR170C	MES1	P00958	751 aa	Known RBP	4.22	□□□□□ -1.73
NPL4	YBR170C	ADE4	P04046	510 aa	Known RBP	4.22	□□□□□ -1.73
NPL4	YBR170C	ALG1	P16661	449 aa		4.22	□□□□□ -1.73
NPL4	YBR170C	SPO11	P23179	398 aa		4.22	□□□□□ -1.73
NPL4	YBR170C	RRP1	P35178	278 aa	Predicted RBP	4.22	□□□□□ -1.73
NPL4	YBR170C	EFM2	P38347	419 aa		4.22	□□□□□ -1.73
NPL4	YBR170C	YDR089W	P38966	869 aa		4.22	□□□□□ -1.73
NPL4	YBR170C	RTT105	P40063	208 aa		4.22	□□□□□ -1.73
NPL4	YBR170C	POP1	P41812	875 aa		4.22	□□□□□ -1.73
NPL4	YBR170C	TAX4	P47030	604 aa		4.22	□□□□□ -1.73
NPL4	YBR170C	BPL1	P48445	690 aa	Predicted RBP	4.22	□□□□□ -1.73
NPL4	YBR170C	YIP5	P53108	310 aa		4.22	□□□□□ -1.73
NPL4	YBR170C	UTP6	Q02354	440 aa	Known RBP	4.22	□□□□□ -1.73
NPL4	YBR170C	SFG1	Q12507	346 aa		4.22	□□□□□ -1.73
NPL4	YBR170C	BAR1	P12630	587 aa		4.21	□□□□□ -1.73
NPL4	YBR170C	RPS2	P25443	254 aa	Known RBP	4.21	□□□□□ -1.73
NPL4	YBR170C	FUN19	P28003	413 aa	Predicted RBP	4.21	□□□□□ -1.73
NPL4	YBR170C	NDI1	P32340	513 aa		4.21	□□□□□ -1.73
NPL4	YBR170C	NIP1	P32497	812 aa	Known RBP	4.21	□□□□□ -1.73
NPL4	YBR170C	HOT13	P36078	116 aa		4.21	□□□□□ -1.73
NPL4	YBR170C	LEU5	P38702	357 aa		4.21	□□□□□ -1.73
NPL4	YBR170C	NMD5	P46970	1048 aa		4.21	□□□□□ -1.73
NPL4	YBR170C	RPA34	P47006	233 aa	Predicted RBP	4.21	□□□□□ -1.73
NPL4	YBR170C	RHO4	Q00246	291 aa		4.21	□□□□□ -1.73
NPL4	YBR170C	RBA50	Q04418	439 aa		4.21	□□□□□ -1.73
NPL4	YBR170C	EDE1	P34216	1381 aa		4.21	□□□□□ -1.74
NPL4	YBR170C	GAL4	P04386	881 aa		4.21	□□□□□ -1.74
NPL4	YBR170C	LEU4	P06208	619 aa	Known RBP	4.21	□□□□□ -1.74
NPL4	YBR170C	SCH9	P11792	824 aa	Known RBP	4.21	□□□□□ -1.74
NPL4	YBR170C	PHO91	P27514	894 aa		4.21	□□□□□ -1.74
NPL4	YBR170C	SOR1	P35497	357 aa	Known RBP	4.21	□□□□□ -1.74
NPL4	YBR170C	RRN10	P38204	145 aa		4.21	□□□□□ -1.74
NPL4	YBR170C	STN1	P38960	494 aa		4.21	□□□□□ -1.74
NPL4	YBR170C	SAS2	P40963	338 aa		4.21	□□□□□ -1.74
NPL4	YBR170C	YJR011C	P47086	261 aa	Predicted RBP	4.21	□□□□□ -1.74
NPL4	YBR170C	ROG1	P53118	685 aa		4.21	□□□□□ -1.74
NPL4	YBR170C	YDR541C	Q03049	344 aa		4.21	□□□□□ -1.74
NPL4	YBR170C	CAC2	Q04199	468 aa		4.21	□□□□□ -1.74
NPL4	YBR170C	HSP31	Q04432	237 aa		4.21	□□□□□ -1.74
NPL4	YBR170C	MCP2	Q06567	569 aa		4.21	□□□□□ -1.74
NPL4	YBR170C	SOR2	Q07786	357 aa		4.21	□□□□□ -1.74
NPL4	YBR170C	ILV5	P06168	395 aa	Known RBP	4.2	□□□□□ -1.74
NPL4	YBR170C	STE3	P06783	470 aa		4.2	□□□□□ -1.74
NPL4	YBR170C	YMR085W	P0CF18	432 aa		4.2	□□□□□ -1.74
NPL4	YBR170C	DBP3	P20447	523 aa	Known RBP	4.2	□□□□□ -1.74
NPL4	YBR170C	RDS1	P25611	832 aa		4.2	□□□□□ -1.74
NPL4	YBR170C	ADY2	P25613	283 aa		4.2	□□□□□ -1.74
NPL4	YBR170C	DAL80	P26343	269 aa		4.2	□□□□□ -1.74
NPL4	YBR170C	SNC1	P31109	117 aa		4.2	□□□□□ -1.74
NPL4	YBR170C	REC114	P32841	428 aa		4.2	□□□□□ -1.74
NPL4	YBR170C	PPQ1	P32945	549 aa		4.2	□□□□□ -1.74
NPL4	YBR170C	OLA1	P38219	394 aa	Known RBP	4.2	□□□□□ -1.74
NPL4	YBR170C	GPI16	P38875	610 aa		4.2	□□□□□ -1.74
NPL4	YBR170C	NUP100	Q02629	959 aa		4.2	□□□□□ -1.74
NPL4	YBR170C	SSK1	Q07084	712 aa		4.2	□□□□□ -1.74
NPL4	YBR170C	RRI1	Q12468	440 aa		4.2	□□□□□ -1.74
NPL4	YBR170C	PPZ1	P26570	692 aa		4.19	□□□□□ -1.74
NPL4	YBR170C	RIB7	P33312	244 aa		4.19	□□□□□ -1.74
NPL4	YBR170C	YMR124W	P39523	943 aa	Known RBP	4.19	□□□□□ -1.74
NPL4	YBR170C	PHO86	P46956	311 aa		4.19	□□□□□ -1.74
NPL4	YBR170C	ASN2	P49090	572 aa	Known RBP	4.19	□□□□□ -1.74
NPL4	YBR170C	PIB2	P53191	635 aa		4.19	□□□□□ -1.74
NPL4	YBR170C	ATP23	P53722	227 aa		4.19	□□□□□ -1.74
NPL4	YBR170C	NDJ1	Q12366	352 aa		4.19	□□□□□ -1.74
NPL4	YBR170C	COQ3	P27680	312 aa		4.18	□□□□□ -1.74
NPL4	YBR170C	MSG5	P38590	489 aa		4.18	□□□□□ -1.74
NPL4	YBR170C	RRP4	P38792	359 aa	Known RBP	4.18	□□□□□ -1.74
NPL4	YBR170C	MNL1	P38888	796 aa		4.18	□□□□□ -1.74
NPL4	YBR170C	GAT2	P40209	560 aa		4.18	□□□□□ -1.74
NPL4	YBR170C	LAP3	Q01532	483 aa	Known RBP RIP-Chip data	4.18	□□□□□ -1.74	not detected
NPL4	YBR170C	CTL1	Q03220	320 aa	Known RBP	4.18	□□□□□ -1.74

Retrieved 100 of 5,963 RNA–protein pairs in 22.2 ms