RNA–Protein interactions for RNA: ENST00000636839.1

CLN3-250, Transcript of CLN3, battenin, humanhuman

TSL 5

Gene CLN3, Length 2,018 nt, Biotype retained intron, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLN3-250ENST00000636839 TEX2Q8IWB9 1127 aa22.71■■□□□ 1.23
CLN3-250ENST00000636839 FAM43AQ8N2R8 423 aa22.71■■□□□ 1.23
CLN3-250ENST00000636839 RMDN3Q96TC7 470 aa22.71■■□□□ 1.23
CLN3-250ENST00000636839 MOV10L1Q9BXT6 1211 aaKnown RBP22.71■■□□□ 1.23
CLN3-250ENST00000636839 TSPY26PQ9H489 355 aa22.71■■□□□ 1.23
CLN3-250ENST00000636839 CYP39A1Q9NYL5 469 aa22.71■■□□□ 1.23
CLN3-250ENST00000636839 ITGB5P18084 799 aa22.7■■□□□ 1.23
CLN3-250ENST00000636839 CASP1P29466 404 aa22.7■■□□□ 1.23
CLN3-250ENST00000636839 UBA7P41226 1012 aa22.7■■□□□ 1.23
CLN3-250ENST00000636839 MDM2Q00987 491 aaPredicted RBP22.7■■□□□ 1.23
CLN3-250ENST00000636839 SAPCD2Q86UD0 394 aa22.7■■□□□ 1.23
CLN3-250ENST00000636839 NCAPG2Q86XI2 1143 aa22.7■■□□□ 1.23
CLN3-250ENST00000636839 MB21D1Q8N884 522 aa22.7■■□□□ 1.23
CLN3-250ENST00000636839 RNF214Q8ND24 703 aa22.7■■□□□ 1.23
CLN3-250ENST00000636839 NAP1L4Q99733 375 aaKnown RBP22.7■■□□□ 1.23
CLN3-250ENST00000636839 PCDHA12Q9UN75 941 aa22.7■■□□□ 1.23
CLN3-250ENST00000636839 CTAGE5O15320 804 aa22.7■■□□□ 1.22
CLN3-250ENST00000636839 ARP10275 920 aa22.7■■□□□ 1.22
CLN3-250ENST00000636839 ZNF157P51786 506 aaPredicted RBP22.7■■□□□ 1.22
CLN3-250ENST00000636839 MRPS9P82933 396 aaKnown RBP22.7■■□□□ 1.22
CLN3-250ENST00000636839 TYRO3Q06418 890 aa22.7■■□□□ 1.22
CLN3-250ENST00000636839 RIOX2Q8IUF8 465 aa22.7■■□□□ 1.22
CLN3-250ENST00000636839 LRWD1Q9UFC0 647 aa22.7■■□□□ 1.22
CLN3-250ENST00000636839 A0A0G2JMZ2 1700 aa22.69■■□□□ 1.22
CLN3-250ENST00000636839 CEP55Q53EZ4 464 aa22.69■■□□□ 1.22
CLN3-250ENST00000636839 ISM2Q6H9L7 571 aa22.69■■□□□ 1.22
CLN3-250ENST00000636839 PXMP2Q9NR77 195 aa22.69■■□□□ 1.22
CLN3-250ENST00000636839 BIN1O00499 593 aa22.69■■□□□ 1.22
CLN3-250ENST00000636839 MYCLP12524 364 aaPredicted RBP22.69■■□□□ 1.22
CLN3-250ENST00000636839 ERCC3P19447 782 aa22.69■■□□□ 1.22
CLN3-250ENST00000636839 AFMP43652 599 aa22.69■■□□□ 1.22
CLN3-250ENST00000636839 CNTN2Q02246 1040 aa22.69■■□□□ 1.22
CLN3-250ENST00000636839 PABPC4Q13310 644 aaKnown RBP eCLIP22.69■■□□□ 1.223e-6■■■■□ 26.6
CLN3-250ENST00000636839 PGM5Q15124 567 aa22.69■■□□□ 1.22
CLN3-250ENST00000636839 TKFCQ3LXA3 575 aa22.69■■□□□ 1.22
CLN3-250ENST00000636839 NAALADL2Q58DX5 795 aa22.69■■□□□ 1.22
CLN3-250ENST00000636839 CABP7Q86V35 215 aa22.69■■□□□ 1.22
CLN3-250ENST00000636839 PLA2G4DQ86XP0 818 aa22.69■■□□□ 1.22
CLN3-250ENST00000636839 MTRQ99707 1265 aa22.69■■□□□ 1.22
CLN3-250ENST00000636839 CCSER1Q9C0I3 900 aa22.69■■□□□ 1.22
CLN3-250ENST00000636839 EHMT1Q9H9B1 1298 aa22.69■■□□□ 1.22
CLN3-250ENST00000636839 MAP3K20Q9NYL2 800 aaKnown RBP22.69■■□□□ 1.22
CLN3-250ENST00000636839 KIAA1468Q9P260 1216 aa22.69■■□□□ 1.22
CLN3-250ENST00000636839 ZBTB48P10074 688 aaPredicted RBP22.68■■□□□ 1.22
CLN3-250ENST00000636839 ARHGEF16Q5VV41 709 aa22.68■■□□□ 1.22
CLN3-250ENST00000636839 RASAL3Q86YV0 1011 aa22.68■■□□□ 1.22
CLN3-250ENST00000636839 AK8Q96MA6 479 aa22.68■■□□□ 1.22
CLN3-250ENST00000636839 PDCD2LQ9BRP1 358 aa22.68■■□□□ 1.22
CLN3-250ENST00000636839 WDR11Q9BZH6 1224 aa22.68■■□□□ 1.22
CLN3-250ENST00000636839 TRPM7Q96QT4 1865 aa22.68■■□□□ 1.22
CLN3-250ENST00000636839 MEIS1O00470 390 aa22.67■■□□□ 1.22
CLN3-250ENST00000636839 SLFN14P0C7P3 912 aa22.67■■□□□ 1.22
CLN3-250ENST00000636839 FSTL1Q12841 308 aa22.67■■□□□ 1.22
CLN3-250ENST00000636839 TMEM266Q2M3C6 531 aa22.67■■□□□ 1.22
CLN3-250ENST00000636839 PDXDC2PQ6P474 469 aa22.67■■□□□ 1.22
CLN3-250ENST00000636839 CHST13Q8NET6 341 aa22.67■■□□□ 1.22
CLN3-250ENST00000636839 RASSF8Q8NHQ8 419 aa22.67■■□□□ 1.22
CLN3-250ENST00000636839 PAGE5Q96GU1 130 aa22.67■■□□□ 1.22
CLN3-250ENST00000636839 DISC1Q9NRI5 854 aa22.67■■□□□ 1.22
CLN3-250ENST00000636839 CCDC192P0DO97 292 aa22.67■■□□□ 1.22
CLN3-250ENST00000636839 SPIRE1Q08AE8 756 aa22.67■■□□□ 1.22
CLN3-250ENST00000636839 PDIA5Q14554 519 aa22.67■■□□□ 1.22
CLN3-250ENST00000636839 ECM1Q16610 540 aa22.67■■□□□ 1.22
CLN3-250ENST00000636839 SASS6Q6UVJ0 657 aa22.67■■□□□ 1.22
CLN3-250ENST00000636839 ANKRD35Q8N283 1001 aa22.67■■□□□ 1.22
CLN3-250ENST00000636839 MXRA8Q9BRK3 442 aa22.67■■□□□ 1.22
CLN3-250ENST00000636839 PKD2L1Q9P0L9 805 aa22.67■■□□□ 1.22
CLN3-250ENST00000636839 ASTN1O14525 1302 aa22.67■■□□□ 1.22
CLN3-250ENST00000636839 FRMPD4Q14CM0 1322 aa22.67■■□□□ 1.22
CLN3-250ENST00000636839 PLCG1P19174 1290 aa22.66■■□□□ 1.22
CLN3-250ENST00000636839 TXLNAP40222 546 aa22.66■■□□□ 1.22
CLN3-250ENST00000636839 PCNX4Q63HM2 1172 aa22.66■■□□□ 1.22
CLN3-250ENST00000636839 IQUBQ8NA54 791 aa22.66■■□□□ 1.22
CLN3-250ENST00000636839 SMCR8Q8TEV9 937 aaPredicted RBP22.66■■□□□ 1.22
CLN3-250ENST00000636839 RABGAP1Q9Y3P9 1069 aa22.66■■□□□ 1.22
CLN3-250ENST00000636839 PCDHA5Q9Y5H7 936 aa22.66■■□□□ 1.22
CLN3-250ENST00000636839 RBBP6Q7Z6E9 1792 aaKnown RBP22.65■■□□□ 1.22
CLN3-250ENST00000636839 POSTNQ15063 836 aa22.65■■□□□ 1.22
CLN3-250ENST00000636839 RRAGBQ5VZM2 374 aa22.65■■□□□ 1.22
CLN3-250ENST00000636839 SAMD3Q8N6K7 520 aa22.65■■□□□ 1.22
CLN3-250ENST00000636839 ANKRD13CQ8N6S4 541 aa22.65■■□□□ 1.22
CLN3-250ENST00000636839 PNMA5Q96PV4 448 aa22.65■■□□□ 1.22
CLN3-250ENST00000636839 GRPEL1Q9HAV7 217 aa22.65■■□□□ 1.22
CLN3-250ENST00000636839 STAT6P42226 847 aa22.65■■□□□ 1.22
CLN3-250ENST00000636839 GRB10Q13322 594 aa22.65■■□□□ 1.22
CLN3-250ENST00000636839 SH3RF1Q7Z6J0 888 aa22.65■■□□□ 1.22
CLN3-250ENST00000636839 ANKRD23Q86SG2 305 aa22.65■■□□□ 1.22
CLN3-250ENST00000636839 SLFN12Q8IYM2 578 aa22.65■■□□□ 1.22
CLN3-250ENST00000636839 CEP57L1Q8IYX8 460 aa22.65■■□□□ 1.22
CLN3-250ENST00000636839 PORCNQ9H237 461 aa22.65■■□□□ 1.22
CLN3-250ENST00000636839 VAV3Q9UKW4 847 aa22.65■■□□□ 1.22
CLN3-250ENST00000636839 TBX3O15119 743 aa22.64■■□□□ 1.22
CLN3-250ENST00000636839 DEKP35659 375 aaKnown RBP22.64■■□□□ 1.22
CLN3-250ENST00000636839 ERVK-9P63128 1117 aa22.64■■□□□ 1.22
CLN3-250ENST00000636839 ERVK-24P63145 666 aa22.64■■□□□ 1.22
CLN3-250ENST00000636839 ANO6Q4KMQ2 910 aa22.64■■□□□ 1.22
CLN3-250ENST00000636839 RGMBQ6NW40 437 aa22.64■■□□□ 1.22
CLN3-250ENST00000636839 FAM20AQ96MK3 541 aa22.64■■□□□ 1.22
CLN3-250ENST00000636839 BLZF1Q9H2G9 400 aa22.64■■□□□ 1.22
CLN3-250ENST00000636839 UBIAD1Q9Y5Z9 338 aa22.64■■□□□ 1.22
Retrieved 100 of 20,778 RNA–protein pairs in 15.9 ms