RNA–Protein interactions for RNA: ENST00000635958.1

CLN3-242, Transcript of CLN3, battenin, humanhuman

TSL 5

Gene CLN3, Length 1,837 nt, Biotype retained intron, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLN3-242ENST00000635958 REM2Q8IYK8 340 aaPredicted RBP16.02■□□□□ 0.16
CLN3-242ENST00000635958 MTMR9Q96QG7 549 aa16.02■□□□□ 0.16
CLN3-242ENST00000635958 TAAR1Q96RJ0 339 aa16.02■□□□□ 0.16
CLN3-242ENST00000635958 TMEM60Q9H2L4 133 aa16.02■□□□□ 0.16
CLN3-242ENST00000635958 GOLGA6L4A6NEF3 574 aa16.01■□□□□ 0.15
CLN3-242ENST00000635958 NEMFO60524 1076 aa16.01■□□□□ 0.15
CLN3-242ENST00000635958 TDP2O95551 362 aa16.01■□□□□ 0.15
CLN3-242ENST00000635958 TPM3P06753 285 aa16.01■□□□□ 0.15
CLN3-242ENST00000635958 FAM110CQ1W6H9 321 aa16.01■□□□□ 0.15
CLN3-242ENST00000635958 Q4G0T1 1027 aa16.01■□□□□ 0.15
CLN3-242ENST00000635958 ANKRD13CQ8N6S4 541 aa16.01■□□□□ 0.15
CLN3-242ENST00000635958 ZIC5Q96T25 663 aa16.01■□□□□ 0.15
CLN3-242ENST00000635958 MRVI1Q9Y6F6 885 aa16.01■□□□□ 0.15
CLN3-242ENST00000635958 CMA1P23946 247 aa16.01■□□□□ 0.15
CLN3-242ENST00000635958 XRRA1Q6P2D8 792 aa16.01■□□□□ 0.15
CLN3-242ENST00000635958 ANKRD35Q8N283 1001 aa16.01■□□□□ 0.15
CLN3-242ENST00000635958 RMDN3Q96TC7 470 aa16.01■□□□□ 0.15
CLN3-242ENST00000635958 R3HDMLQ9H3Y0 253 aa16.01■□□□□ 0.15
CLN3-242ENST00000635958 PXMP2Q9NR77 195 aa16.01■□□□□ 0.15
CLN3-242ENST00000635958 DDX25Q9UHL0 483 aaKnown RBP16.01■□□□□ 0.15
CLN3-242ENST00000635958 PCNTO95613 3336 aa16■□□□□ 0.15
CLN3-242ENST00000635958 FAM237AA0A1B0GTK4 181 aa16■□□□□ 0.15
CLN3-242ENST00000635958 SLC37A4O43826 429 aa16■□□□□ 0.15
CLN3-242ENST00000635958 BCRP11274 1271 aa16■□□□□ 0.15
CLN3-242ENST00000635958 TAF1CQ15572 869 aaPredicted RBP16■□□□□ 0.15
CLN3-242ENST00000635958 IL17AQ16552 155 aa16■□□□□ 0.15
CLN3-242ENST00000635958 PCNX4Q63HM2 1172 aa16■□□□□ 0.15
CLN3-242ENST00000635958 DNERQ8NFT8 737 aa16■□□□□ 0.15
CLN3-242ENST00000635958 LENG9Q96B70 501 aa16■□□□□ 0.15
CLN3-242ENST00000635958 CAPNS2Q96L46 248 aa16■□□□□ 0.15
CLN3-242ENST00000635958 PDCD2LQ9BRP1 358 aa16■□□□□ 0.15
CLN3-242ENST00000635958 PORCNQ9H237 461 aa16■□□□□ 0.15
CLN3-242ENST00000635958 IGLV3-22A0A075B6J6 115 aa15.99■□□□□ 0.15
CLN3-242ENST00000635958 FAM86B1E9PN63 330 aa15.99■□□□□ 0.15
CLN3-242ENST00000635958 TBX3O15119 743 aa15.99■□□□□ 0.15
CLN3-242ENST00000635958 FAM86B2P0C5J1 330 aa15.99■□□□□ 0.15
CLN3-242ENST00000635958 OR52Z1P0C646 297 aa15.99■□□□□ 0.15
CLN3-242ENST00000635958 C17orf99Q6UX52 265 aa15.99■□□□□ 0.15
CLN3-242ENST00000635958 POTEDQ86YR6 584 aa15.99■□□□□ 0.15
CLN3-242ENST00000635958 NSUN6Q8TEA1 469 aaKnown RBP15.99■□□□□ 0.15
CLN3-242ENST00000635958 CLIC6Q96NY7 704 aa15.99■□□□□ 0.15
CLN3-242ENST00000635958 KCNMB3Q9NPA1 279 aa15.99■□□□□ 0.15
CLN3-242ENST00000635958 DNAJC25-GNG10A0A024R161 153 aa15.98■□□□□ 0.15
CLN3-242ENST00000635958 MEIS1O00470 390 aa15.98■□□□□ 0.15
CLN3-242ENST00000635958 DYNC1I1O14576 645 aa15.98■□□□□ 0.15
CLN3-242ENST00000635958 TLR2O60603 784 aa15.98■□□□□ 0.15
CLN3-242ENST00000635958 GRIN1Q05586 938 aa15.98■□□□□ 0.15
CLN3-242ENST00000635958 PGM5Q15124 567 aa15.98■□□□□ 0.15
CLN3-242ENST00000635958 CALCRLQ16602 461 aa15.98■□□□□ 0.15
CLN3-242ENST00000635958 CEP55Q53EZ4 464 aa15.98■□□□□ 0.15
CLN3-242ENST00000635958 RESP18Q5W5W9 173 aa15.98■□□□□ 0.15
CLN3-242ENST00000635958 SHC4Q6S5L8 630 aa15.98■□□□□ 0.15
CLN3-242ENST00000635958 DTHD1Q6ZMT9 781 aa15.98■□□□□ 0.15
CLN3-242ENST00000635958 PAXIP1Q6ZW49 1069 aaPredicted RBP15.98■□□□□ 0.15
CLN3-242ENST00000635958 NIPA1Q7RTP0 329 aa15.98■□□□□ 0.15
CLN3-242ENST00000635958 VSIG10LQ86VR7 867 aa15.98■□□□□ 0.15
CLN3-242ENST00000635958 ABRAQ8N0Z2 381 aa15.98■□□□□ 0.15
CLN3-242ENST00000635958 FAM133AQ8N9E0 248 aa15.98■□□□□ 0.15
CLN3-242ENST00000635958 HAS1Q92839 578 aa15.98■□□□□ 0.15
CLN3-242ENST00000635958 PURBQ96QR8 312 aaKnown RBP15.98■□□□□ 0.15
CLN3-242ENST00000635958 IWS1Q96ST2 819 aa15.98■□□□□ 0.15
CLN3-242ENST00000635958 ZFYVE28Q9HCC9 887 aa15.98■□□□□ 0.15
CLN3-242ENST00000635958 STRNO43815 780 aa15.98■□□□□ 0.15
CLN3-242ENST00000635958 ALDH1A1P00352 501 aa15.98■□□□□ 0.15
CLN3-242ENST00000635958 PTMAP06454 111 aaKnown RBP15.98■□□□□ 0.15
CLN3-242ENST00000635958 FCER1AP12319 257 aa15.98■□□□□ 0.15
CLN3-242ENST00000635958 ARHGEF16Q5VV41 709 aa15.98■□□□□ 0.15
CLN3-242ENST00000635958 SASS6Q6UVJ0 657 aa15.98■□□□□ 0.15
CLN3-242ENST00000635958 CCAR1Q8IX12 1150 aaKnown RBP15.98■□□□□ 0.15
CLN3-242ENST00000635958 MRPS27Q92552 414 aaKnown RBP15.98■□□□□ 0.15
CLN3-242ENST00000635958 EFCC1Q9HA90 598 aa15.98■□□□□ 0.15
CLN3-242ENST00000635958 EIF2AK3Q9NZJ5 1116 aaKnown RBP15.98■□□□□ 0.15
CLN3-242ENST00000635958 UBIAD1Q9Y5Z9 338 aa15.98■□□□□ 0.15
CLN3-242ENST00000635958 POTEB2H3BUK9 544 aa15.97■□□□□ 0.15
CLN3-242ENST00000635958 CA12O43570 354 aa15.97■□□□□ 0.15
CLN3-242ENST00000635958 NR3C2P08235 984 aa15.97■□□□□ 0.15
CLN3-242ENST00000635958 EIF2AK2P19525 551 aaKnown RBP15.97■□□□□ 0.15
CLN3-242ENST00000635958 ZNF76P36508 570 aa15.97■□□□□ 0.15
CLN3-242ENST00000635958 LONP1P36776 959 aaKnown RBP15.97■□□□□ 0.15
CLN3-242ENST00000635958 UBXN2AP68543 259 aa15.97■□□□□ 0.15
CLN3-242ENST00000635958 MRPS9P82933 396 aaKnown RBP15.97■□□□□ 0.15
CLN3-242ENST00000635958 KCTD2Q14681 263 aa15.97■□□□□ 0.15
CLN3-242ENST00000635958 PRR16Q569H4 304 aa15.97■□□□□ 0.15
CLN3-242ENST00000635958 ENGASEQ8NFI3 743 aa15.97■□□□□ 0.15
CLN3-242ENST00000635958 IL31RAQ8NI17 732 aa15.97■□□□□ 0.15
CLN3-242ENST00000635958 CYP2W1Q8TAV3 490 aa15.97■□□□□ 0.15
CLN3-242ENST00000635958 ETNPPLQ8TBG4 499 aa15.97■□□□□ 0.15
CLN3-242ENST00000635958 FAM20AQ96MK3 541 aa15.97■□□□□ 0.15
CLN3-242ENST00000635958 MMP19Q99542 508 aa15.97■□□□□ 0.15
CLN3-242ENST00000635958 MXRA8Q9BRK3 442 aa15.97■□□□□ 0.15
CLN3-242ENST00000635958 CSRNP2Q9H175 543 aa15.97■□□□□ 0.15
CLN3-242ENST00000635958 HPSEQ9Y251 543 aa15.97■□□□□ 0.15
CLN3-242ENST00000635958 LCTP09848 1927 aa15.96■□□□□ 0.15
CLN3-242ENST00000635958 VWA3AA6NCI4 1184 aa15.96■□□□□ 0.15
CLN3-242ENST00000635958 LIG1P18858 919 aa15.96■□□□□ 0.15
CLN3-242ENST00000635958 MAPK4P31152 587 aa15.96■□□□□ 0.15
CLN3-242ENST00000635958 FXR2P51116 673 aaKnown RBP eCLIP15.96■□□□□ 0.15
CLN3-242ENST00000635958 CNTN2Q02246 1040 aa15.96■□□□□ 0.15
CLN3-242ENST00000635958 PDIA5Q14554 519 aa15.96■□□□□ 0.15
CLN3-242ENST00000635958 FSIP1Q8NA03 581 aa15.96■□□□□ 0.15
Retrieved 100 of 20,778 RNA–protein pairs in 23.7 ms