RNA–Protein interactions for RNA: ENST00000611852.4

CCDC28A-202, Transcript of coiled-coil domain containing 28A, humanhuman

TSL 1 (best) BASIC

Gene CCDC28A, Length 1,505 nt, Biotype protein coding, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC28A-202ENST00000611852 SCFD2Q8WU76 684 aa18.95■□□□□ 0.62
CCDC28A-202ENST00000611852 PGBD1Q96JS3 809 aa18.95■□□□□ 0.62
CCDC28A-202ENST00000611852 WDR11Q9BZH6 1224 aa18.95■□□□□ 0.62
CCDC28A-202ENST00000611852 XPNPEP3Q9NQH7 507 aa18.95■□□□□ 0.62
CCDC28A-202ENST00000611852 GNEQ9Y223 722 aaKnown RBP18.95■□□□□ 0.62
CCDC28A-202ENST00000611852 KIAA1217Q5T5P2 1943 aa18.95■□□□□ 0.62
CCDC28A-202ENST00000611852 RGS20O76081 388 aa18.95■□□□□ 0.62
CCDC28A-202ENST00000611852 MNX1P50219 401 aaPredicted RBP18.95■□□□□ 0.62
CCDC28A-202ENST00000611852 NPY5RQ15761 445 aa18.95■□□□□ 0.62
CCDC28A-202ENST00000611852 IFFO2Q5TF58 517 aa18.95■□□□□ 0.62
CCDC28A-202ENST00000611852 JAKMIP3Q5VZ66 844 aa18.95■□□□□ 0.62
CCDC28A-202ENST00000611852 XRRA1Q6P2D8 792 aa18.95■□□□□ 0.62
CCDC28A-202ENST00000611852 SEPT14Q6ZU15 432 aa18.95■□□□□ 0.62
CCDC28A-202ENST00000611852 ZFP91Q96JP5 570 aaPredicted RBP18.95■□□□□ 0.62
CCDC28A-202ENST00000611852 ALG1Q9BT22 464 aa18.95■□□□□ 0.62
CCDC28A-202ENST00000611852 ANO3Q9BYT9 981 aa18.95■□□□□ 0.62
CCDC28A-202ENST00000611852 GJB4Q9NTQ9 266 aa18.95■□□□□ 0.62
CCDC28A-202ENST00000611852 SYNRGQ9UMZ2 1314 aa18.94■□□□□ 0.62
CCDC28A-202ENST00000611852 STAM2O75886 525 aa18.94■□□□□ 0.62
CCDC28A-202ENST00000611852 PGK1P00558 417 aa18.94■□□□□ 0.62
CCDC28A-202ENST00000611852 XBP1P17861 261 aa18.94■□□□□ 0.62
CCDC28A-202ENST00000611852 DUSP28Q4G0W2 176 aa18.94■□□□□ 0.62
CCDC28A-202ENST00000611852 ARRDC4Q8NCT1 418 aa18.94■□□□□ 0.62
CCDC28A-202ENST00000611852 PHF20Q9BVI0 1012 aa18.94■□□□□ 0.62
CCDC28A-202ENST00000611852 EHMT1Q9H9B1 1298 aa18.94■□□□□ 0.62
CCDC28A-202ENST00000611852 PCDHA4Q9UN74 947 aa18.94■□□□□ 0.62
CCDC28A-202ENST00000611852 KCNJ14Q9UNX9 436 aa18.94■□□□□ 0.62
CCDC28A-202ENST00000611852 ADAMTS4O75173 837 aa18.93■□□□□ 0.62
CCDC28A-202ENST00000611852 ARIH2O95376 493 aa18.93■□□□□ 0.62
CCDC28A-202ENST00000611852 PTGS1P23219 599 aa18.93■□□□□ 0.62
CCDC28A-202ENST00000611852 RGS19P49795 217 aa18.93■□□□□ 0.62
CCDC28A-202ENST00000611852 TTLL4Q14679 1199 aa18.93■□□□□ 0.62
CCDC28A-202ENST00000611852 GJC2Q5T442 439 aaPredicted RBP18.93■□□□□ 0.62
CCDC28A-202ENST00000611852 MCTP2Q6DN12 878 aa18.93■□□□□ 0.62
CCDC28A-202ENST00000611852 GALNT17Q6IS24 598 aa18.93■□□□□ 0.62
CCDC28A-202ENST00000611852 CCDC62Q6P9F0 684 aa18.93■□□□□ 0.62
CCDC28A-202ENST00000611852 UBE2Q1Q7Z7E8 422 aa18.93■□□□□ 0.62
CCDC28A-202ENST00000611852 DAGLBQ8NCG7 672 aa18.93■□□□□ 0.62
CCDC28A-202ENST00000611852 RASGRP4Q8TDF6 673 aa18.93■□□□□ 0.62
CCDC28A-202ENST00000611852 FARP2O94887 1054 aaPredicted RBP18.92■□□□□ 0.62
CCDC28A-202ENST00000611852 TXNP10599 105 aaKnown RBP18.92■□□□□ 0.62
CCDC28A-202ENST00000611852 HMGN5P82970 282 aaKnown RBP18.92■□□□□ 0.62
CCDC28A-202ENST00000611852 LRRC41Q15345 812 aa18.92■□□□□ 0.62
CCDC28A-202ENST00000611852 TLK2Q86UE8 772 aa18.92■□□□□ 0.62
CCDC28A-202ENST00000611852 DIS3LQ8TF46 1054 aaKnown RBP18.92■□□□□ 0.62
CCDC28A-202ENST00000611852 INPP4AQ96PE3 977 aaPredicted RBP18.92■□□□□ 0.62
CCDC28A-202ENST00000611852 UPF3AQ9H1J1 476 aaKnown RBP18.92■□□□□ 0.62
CCDC28A-202ENST00000611852 RTEL1Q9NZ71 1219 aa18.92■□□□□ 0.62
CCDC28A-202ENST00000611852 Q9Y3F1 56 aa18.92■□□□□ 0.62
CCDC28A-202ENST00000611852 M0R2N6 131 aa18.91■□□□□ 0.62
CCDC28A-202ENST00000611852 DNM1LO00429 736 aa18.91■□□□□ 0.62
CCDC28A-202ENST00000611852 SREBF1P36956 1147 aa18.91■□□□□ 0.62
CCDC28A-202ENST00000611852 GJA9P57773 515 aa18.91■□□□□ 0.62
CCDC28A-202ENST00000611852 IRX5P78411 483 aaPredicted RBP18.91■□□□□ 0.62
CCDC28A-202ENST00000611852 RNF180Q86T96 592 aa18.91■□□□□ 0.62
CCDC28A-202ENST00000611852 BLIDQ8IZY5 108 aa18.91■□□□□ 0.62
CCDC28A-202ENST00000611852 CRYGNQ8WXF5 182 aa18.91■□□□□ 0.62
CCDC28A-202ENST00000611852 DDX41Q9UJV9 622 aaKnown RBP18.91■□□□□ 0.62
CCDC28A-202ENST00000611852 MRVI1Q9Y6F6 885 aa18.91■□□□□ 0.62
CCDC28A-202ENST00000611852 MKI67P46013 3256 aaKnown RBP18.91■□□□□ 0.62
CCDC28A-202ENST00000611852 MYADML2A6NDP7 307 aa18.9■□□□□ 0.62
CCDC28A-202ENST00000611852 NKRFO15226 690 aaKnown RBP eCLIP18.9■□□□□ 0.62
CCDC28A-202ENST00000611852 CTAGE5O15320 804 aa18.9■□□□□ 0.62
CCDC28A-202ENST00000611852 DYNC1LI2O43237 492 aaPredicted RBP18.9■□□□□ 0.62
CCDC28A-202ENST00000611852 MYCNP04198 464 aaPredicted RBP18.9■□□□□ 0.62
CCDC28A-202ENST00000611852 NKX3-2P78367 333 aa18.9■□□□□ 0.62
CCDC28A-202ENST00000611852 LY6KQ17RY6 165 aa18.9■□□□□ 0.62
CCDC28A-202ENST00000611852 GNPTABQ3T906 1256 aa18.9■□□□□ 0.62
CCDC28A-202ENST00000611852 KLHDC9Q8NEP7 349 aa18.9■□□□□ 0.62
CCDC28A-202ENST00000611852 COPS5Q92905 334 aa18.9■□□□□ 0.62
CCDC28A-202ENST00000611852 PAWRQ96IZ0 340 aaKnown RBP18.9■□□□□ 0.62
CCDC28A-202ENST00000611852 SPC25Q9HBM1 224 aa18.9■□□□□ 0.62
CCDC28A-202ENST00000611852 C6orf222P0C671 652 aaPredicted RBP18.9■□□□□ 0.62
CCDC28A-202ENST00000611852 ITGB5P18084 799 aa18.9■□□□□ 0.62
CCDC28A-202ENST00000611852 CST5P28325 142 aaPredicted RBP18.9■□□□□ 0.62
CCDC28A-202ENST00000611852 ICAM3P32942 547 aa18.9■□□□□ 0.62
CCDC28A-202ENST00000611852 ARHGAP4P98171 946 aa18.9■□□□□ 0.62
CCDC28A-202ENST00000611852 KCNV1Q6PIU1 500 aa18.9■□□□□ 0.62
CCDC28A-202ENST00000611852 AP5M1Q9H0R1 490 aa18.9■□□□□ 0.62
CCDC28A-202ENST00000611852 UBIAD1Q9Y5Z9 338 aa18.9■□□□□ 0.62
CCDC28A-202ENST00000611852 SPATA31C2B4DYI2 1134 aa18.89■□□□□ 0.61
CCDC28A-202ENST00000611852 KBTBD13C9JR72 458 aa18.89■□□□□ 0.61
CCDC28A-202ENST00000611852 TGFB3P10600 412 aa18.89■□□□□ 0.61
CCDC28A-202ENST00000611852 COL6A1P12109 1028 aa18.89■□□□□ 0.61
CCDC28A-202ENST00000611852 SEMA3FQ13275 785 aa18.89■□□□□ 0.61
CCDC28A-202ENST00000611852 CCSAPQ6IQ19 270 aaPredicted RBP18.89■□□□□ 0.61
CCDC28A-202ENST00000611852 NECAB2Q7Z6G3 386 aa18.89■□□□□ 0.61
CCDC28A-202ENST00000611852 FIBPO43427 364 aa18.88■□□□□ 0.61
CCDC28A-202ENST00000611852 CYP3A4P08684 503 aa18.88■□□□□ 0.61
CCDC28A-202ENST00000611852 FOSBP53539 338 aa18.88■□□□□ 0.61
CCDC28A-202ENST00000611852 SP2Q02086 613 aa18.88■□□□□ 0.61
CCDC28A-202ENST00000611852 GNASQ5JWF2 1037 aa18.88■□□□□ 0.61
CCDC28A-202ENST00000611852 KRT40Q6A162 431 aa18.88■□□□□ 0.61
CCDC28A-202ENST00000611852 NLRX1Q86UT6 975 aa18.88■□□□□ 0.61
CCDC28A-202ENST00000611852 FAM184AQ8NB25 1140 aa18.88■□□□□ 0.61
CCDC28A-202ENST00000611852 OR6J1Q8NGC5 347 aa18.88■□□□□ 0.61
CCDC28A-202ENST00000611852 OXER1Q8TDS5 423 aa18.88■□□□□ 0.61
CCDC28A-202ENST00000611852 GPRASP2Q96D09 838 aa18.88■□□□□ 0.61
CCDC28A-202ENST00000611852 MYH7BA7E2Y1 1941 aa18.88■□□□□ 0.61
CCDC28A-202ENST00000611852 GH1P01241 217 aa18.87■□□□□ 0.61
Retrieved 100 of 20,778 RNA–protein pairs in 70.9 ms