RNA–Protein interactions for RNA: ENST00000601849.1

VRK3-224, Transcript of vaccinia related kinase 3, humanhuman

TSL 2

Gene VRK3, Length 653 nt, Biotype retained intron, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VRK3-224ENST00000601849 MTCH2Q9Y6C9 303 aa11.17□□□□□ -0.62
VRK3-224ENST00000601849 MRVI1Q9Y6F6 885 aa11.17□□□□□ -0.62
VRK3-224ENST00000601849 ABHD14A-ACY1A0A1B0GW23 586 aa11.16□□□□□ -0.62
VRK3-224ENST00000601849 CFBP00751 764 aa11.16□□□□□ -0.62
VRK3-224ENST00000601849 MMP3P08254 477 aa11.16□□□□□ -0.62
VRK3-224ENST00000601849 BMP1P13497 986 aa11.16□□□□□ -0.62
VRK3-224ENST00000601849 TRDNQ13061 729 aa11.16□□□□□ -0.62
VRK3-224ENST00000601849 B4GALNT3Q6L9W6 998 aa11.16□□□□□ -0.62
VRK3-224ENST00000601849 CCDC62Q6P9F0 684 aa11.16□□□□□ -0.62
VRK3-224ENST00000601849 CNKSR3Q6P9H4 555 aa11.16□□□□□ -0.62
VRK3-224ENST00000601849 CWC27Q6UX04 472 aaKnown RBP11.16□□□□□ -0.62
VRK3-224ENST00000601849 LRRC8DQ7L1W4 858 aa11.16□□□□□ -0.62
VRK3-224ENST00000601849 ZNF589Q86UQ0 364 aaPredicted RBP11.16□□□□□ -0.62
VRK3-224ENST00000601849 SYTL5Q8TDW5 730 aaPredicted RBP11.16□□□□□ -0.62
VRK3-224ENST00000601849 ANKS1AQ92625 1134 aa11.16□□□□□ -0.62
VRK3-224ENST00000601849 HLA-CQ95604 372 aa11.16□□□□□ -0.62
VRK3-224ENST00000601849 RAD9AQ99638 391 aa11.16□□□□□ -0.62
VRK3-224ENST00000601849 AMNQ9BXJ7 453 aa11.16□□□□□ -0.62
VRK3-224ENST00000601849 RFXAPO00287 272 aa11.15□□□□□ -0.62
VRK3-224ENST00000601849 PPFIA4O75335 1185 aa11.15□□□□□ -0.62
VRK3-224ENST00000601849 ARIH2O95376 493 aa11.15□□□□□ -0.62
VRK3-224ENST00000601849 NR3C2P08235 984 aa11.15□□□□□ -0.62
VRK3-224ENST00000601849 EIF2AK2P19525 551 aaKnown RBP11.15□□□□□ -0.62
VRK3-224ENST00000601849 TAP1Q03518 808 aa11.15□□□□□ -0.62
VRK3-224ENST00000601849 ARHGAP1Q07960 439 aa11.15□□□□□ -0.62
VRK3-224ENST00000601849 PTK7Q13308 1070 aa11.15□□□□□ -0.62
VRK3-224ENST00000601849 IFIT1BQ5T764 474 aaKnown RBP11.15□□□□□ -0.62
VRK3-224ENST00000601849 GDF6Q6KF10 455 aaPredicted RBP11.15□□□□□ -0.62
VRK3-224ENST00000601849 TBC1D10CQ8IV04 446 aa11.15□□□□□ -0.62
VRK3-224ENST00000601849 EMID1Q96A84 441 aaPredicted RBP11.15□□□□□ -0.62
VRK3-224ENST00000601849 ALG1Q9BT22 464 aa11.15□□□□□ -0.62
VRK3-224ENST00000601849 ZSWIM5Q9P217 1185 aa11.15□□□□□ -0.62
VRK3-224ENST00000601849 GTF2IRD1Q9UHL9 959 aa11.15□□□□□ -0.62
VRK3-224ENST00000601849 DDX41Q9UJV9 622 aaKnown RBP11.15□□□□□ -0.62
VRK3-224ENST00000601849 LRRC37A2A6NM11 1700 aa11.15□□□□□ -0.63
VRK3-224ENST00000601849 EMSYQ7Z589 1322 aa11.14□□□□□ -0.63
VRK3-224ENST00000601849 CHD7Q9P2D1 2997 aa11.14□□□□□ -0.63
VRK3-224ENST00000601849 ERICH2A1L162 156 aa11.14□□□□□ -0.63
VRK3-224ENST00000601849 B4E1Z4 1266 aa11.14□□□□□ -0.63
VRK3-224ENST00000601849 TGFB3P10600 412 aa11.14□□□□□ -0.63
VRK3-224ENST00000601849 CKBP12277 381 aa11.14□□□□□ -0.63
VRK3-224ENST00000601849 MYCLP12524 364 aaPredicted RBP11.14□□□□□ -0.63
VRK3-224ENST00000601849 PSEN2P49810 448 aa11.14□□□□□ -0.63
VRK3-224ENST00000601849 MFSD10Q14728 455 aa11.14□□□□□ -0.63
VRK3-224ENST00000601849 KIAA0753Q2KHM9 967 aa11.14□□□□□ -0.63
VRK3-224ENST00000601849 QRICH1Q2TAL8 776 aa11.14□□□□□ -0.63
VRK3-224ENST00000601849 CHD1LQ86WJ1 897 aa11.14□□□□□ -0.63
VRK3-224ENST00000601849 PPTC7Q8NI37 304 aa11.14□□□□□ -0.63
VRK3-224ENST00000601849 PPP1R13LQ8WUF5 828 aa11.14□□□□□ -0.63
VRK3-224ENST00000601849 TBC1D5Q92609 795 aa11.14□□□□□ -0.63
VRK3-224ENST00000601849 VWCEQ96DN2 955 aa11.14□□□□□ -0.63
VRK3-224ENST00000601849 DSCC1Q9BVC3 393 aa11.14□□□□□ -0.63
VRK3-224ENST00000601849 OSBPL3Q9H4L5 887 aa11.14□□□□□ -0.63
VRK3-224ENST00000601849 JMJD4Q9H9V9 463 aa11.14□□□□□ -0.63
VRK3-224ENST00000601849 MLXIPQ9HAP2 919 aa11.14□□□□□ -0.63
VRK3-224ENST00000601849 PXMP2Q9NR77 195 aa11.14□□□□□ -0.63
VRK3-224ENST00000601849 HDAC6Q9UBN7 1215 aa11.14□□□□□ -0.63
VRK3-224ENST00000601849 NEDD4P46934 1319 aa11.13□□□□□ -0.63
VRK3-224ENST00000601849 TRANK1O15050 2925 aa11.13□□□□□ -0.63
VRK3-224ENST00000601849 KLRF2D3W0D1 207 aa11.13□□□□□ -0.63
VRK3-224ENST00000601849 GNAT1P11488 350 aa11.13□□□□□ -0.63
VRK3-224ENST00000601849 WDR5P61964 334 aaKnown RBP11.13□□□□□ -0.63
VRK3-224ENST00000601849 TFF2Q03403 129 aa11.13□□□□□ -0.63
VRK3-224ENST00000601849 GNPTABQ3T906 1256 aa11.13□□□□□ -0.63
VRK3-224ENST00000601849 ENAHQ8N8S7 591 aaPredicted RBP11.13□□□□□ -0.63
VRK3-224ENST00000601849 FAM122AQ96E09 287 aa11.13□□□□□ -0.63
VRK3-224ENST00000601849 TGS1Q96RS0 853 aaKnown RBP11.13□□□□□ -0.63
VRK3-224ENST00000601849 CPVLQ9H3G5 476 aa11.13□□□□□ -0.63
VRK3-224ENST00000601849 INSL6Q9Y581 213 aa11.13□□□□□ -0.63
VRK3-224ENST00000601849 PCDHA1Q9Y5I3 950 aa11.13□□□□□ -0.63
VRK3-224ENST00000601849 TTC28Q96AY4 2481 aa11.12□□□□□ -0.63
VRK3-224ENST00000601849 GCOM1H8Y6P7 765 aaPredicted RBP11.12□□□□□ -0.63
VRK3-224ENST00000601849 NOP56O00567 594 aaKnown RBP11.12□□□□□ -0.63
VRK3-224ENST00000601849 ZBTB5O15062 677 aa11.12□□□□□ -0.63
VRK3-224ENST00000601849 GJB5O95377 273 aa11.12□□□□□ -0.63
VRK3-224ENST00000601849 F2P00734 622 aa11.12□□□□□ -0.63
VRK3-224ENST00000601849 CXCL10P02778 98 aa11.12□□□□□ -0.63
VRK3-224ENST00000601849 AMHP03971 560 aa11.12□□□□□ -0.63
VRK3-224ENST00000601849 POLR2MP0CAP2 368 aa11.12□□□□□ -0.63
VRK3-224ENST00000601849 CCND2P30279 289 aa11.12□□□□□ -0.63
VRK3-224ENST00000601849 KCNQ1P51787 676 aa11.12□□□□□ -0.63
VRK3-224ENST00000601849 RBL2Q08999 1139 aa11.12□□□□□ -0.63
VRK3-224ENST00000601849 GRB10Q13322 594 aa11.12□□□□□ -0.63
VRK3-224ENST00000601849 SART3Q15020 963 aaKnown RBP11.12□□□□□ -0.63
VRK3-224ENST00000601849 STOX1Q6ZVD7 989 aa11.12□□□□□ -0.63
VRK3-224ENST00000601849 SMC5Q8IY18 1101 aa11.12□□□□□ -0.63
VRK3-224ENST00000601849 RUFY2Q8WXA3 655 aa11.12□□□□□ -0.63
VRK3-224ENST00000601849 KAT2BQ92831 832 aa11.12□□□□□ -0.63
VRK3-224ENST00000601849 SPATA33Q96N06 139 aa11.12□□□□□ -0.63
VRK3-224ENST00000601849 MYO9BQ13459 2157 aa11.11□□□□□ -0.63
VRK3-224ENST00000601849 GBF1Q92538 1859 aa11.11□□□□□ -0.63
VRK3-224ENST00000601849 RSPH10B2B2RC85 870 aa11.11□□□□□ -0.63
VRK3-224ENST00000601849 LGR5O75473 907 aa11.11□□□□□ -0.63
VRK3-224ENST00000601849 STAM2O75886 525 aa11.11□□□□□ -0.63
VRK3-224ENST00000601849 RSPH10BP0C881 870 aa11.11□□□□□ -0.63
VRK3-224ENST00000601849 HSD17B4P51659 736 aa11.11□□□□□ -0.63
VRK3-224ENST00000601849 NUCB1Q02818 461 aa11.11□□□□□ -0.63
VRK3-224ENST00000601849 PTPROQ16827 1216 aa11.11□□□□□ -0.63
VRK3-224ENST00000601849 CELF3Q5SZQ8 465 aaKnown RBP11.11□□□□□ -0.63
VRK3-224ENST00000601849 MYSM1Q5VVJ2 828 aa11.11□□□□□ -0.63
Retrieved 100 of 20,778 RNA–protein pairs in 21.7 ms