RNA–Protein interactions for RNA: ENST00000600236.1

HIF3A-217, Transcript of hypoxia inducible factor 3 subunit alpha, humanhuman

TSL 3

Gene HIF3A, Length 313 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
HIF3A-217ENST00000600236 E7EWF7 191 aa13.26□□□□□ -0.29
HIF3A-217ENST00000600236 GCOM1H8Y6P7 765 aaPredicted RBP13.26□□□□□ -0.29
HIF3A-217ENST00000600236 POLR2MP0CAP2 368 aa13.26□□□□□ -0.29
HIF3A-217ENST00000600236 PTH1RQ03431 593 aa13.26□□□□□ -0.29
HIF3A-217ENST00000600236 ARHGAP1Q07960 439 aa13.26□□□□□ -0.29
HIF3A-217ENST00000600236 PTGISQ16647 500 aa13.26□□□□□ -0.29
HIF3A-217ENST00000600236 TMEM67Q5HYA8 995 aa13.26□□□□□ -0.29
HIF3A-217ENST00000600236 DEFB128Q7Z7B8 93 aa13.26□□□□□ -0.29
HIF3A-217ENST00000600236 SESTD1Q86VW0 696 aa13.26□□□□□ -0.29
HIF3A-217ENST00000600236 CAGE1Q8TC20 777 aa13.26□□□□□ -0.29
HIF3A-217ENST00000600236 EMID1Q96A84 441 aaPredicted RBP13.26□□□□□ -0.29
HIF3A-217ENST00000600236 PDCD2LQ9BRP1 358 aa13.26□□□□□ -0.29
HIF3A-217ENST00000600236 RIOX1Q9H6W3 641 aa13.26□□□□□ -0.29
HIF3A-217ENST00000600236 DDX41Q9UJV9 622 aaKnown RBP13.26□□□□□ -0.29
HIF3A-217ENST00000600236 MYCLP12524 364 aaPredicted RBP13.25□□□□□ -0.29
HIF3A-217ENST00000600236 ATP2A2P16615 1042 aaKnown RBP13.25□□□□□ -0.29
HIF3A-217ENST00000600236 CASC1Q6TDU7 716 aa13.25□□□□□ -0.29
HIF3A-217ENST00000600236 DHX37Q8IY37 1157 aaKnown RBP13.25□□□□□ -0.29
HIF3A-217ENST00000600236 C7orf31Q8N865 590 aa13.25□□□□□ -0.29
HIF3A-217ENST00000600236 CTCFLQ8NI51 663 aaPredicted RBP13.25□□□□□ -0.29
HIF3A-217ENST00000600236 AFAP1L1Q8TED9 768 aa13.25□□□□□ -0.29
HIF3A-217ENST00000600236 PIGSQ96S52 555 aa13.25□□□□□ -0.29
HIF3A-217ENST00000600236 SLC9A7Q96T83 725 aa13.25□□□□□ -0.29
HIF3A-217ENST00000600236 COL25A1Q9BXS0 654 aaPredicted RBP13.25□□□□□ -0.29
HIF3A-217ENST00000600236 FTOQ9C0B1 505 aaKnown RBP eCLIP13.25□□□□□ -0.29
HIF3A-217ENST00000600236 NKX2-4Q9H2Z4 354 aa13.25□□□□□ -0.29
HIF3A-217ENST00000600236 PCDHA11Q9Y5I1 949 aa13.25□□□□□ -0.29
HIF3A-217ENST00000600236 PNMA6FA0A0J9YX94 578 aa13.24□□□□□ -0.29
HIF3A-217ENST00000600236 DDAH1O94760 285 aa13.24□□□□□ -0.29
HIF3A-217ENST00000600236 PARNO95453 639 aaKnown RBP13.24□□□□□ -0.29
HIF3A-217ENST00000600236 IQCF3P0C7M6 154 aa13.24□□□□□ -0.29
HIF3A-217ENST00000600236 CCND2P30279 289 aa13.24□□□□□ -0.29
HIF3A-217ENST00000600236 HOXA13P31271 388 aaPredicted RBP13.24□□□□□ -0.29
HIF3A-217ENST00000600236 KIF5BP33176 963 aa13.24□□□□□ -0.29
HIF3A-217ENST00000600236 TROAPQ12815 778 aa13.24□□□□□ -0.29
HIF3A-217ENST00000600236 PGM5Q15124 567 aa13.24□□□□□ -0.29
HIF3A-217ENST00000600236 GNPTABQ3T906 1256 aa13.24□□□□□ -0.29
HIF3A-217ENST00000600236 PPP2R2DQ66LE6 453 aa13.24□□□□□ -0.29
HIF3A-217ENST00000600236 STOX1Q6ZVD7 989 aa13.24□□□□□ -0.29
HIF3A-217ENST00000600236 PPTC7Q8NI37 304 aa13.24□□□□□ -0.29
HIF3A-217ENST00000600236 SYMPKQ92797 1274 aaKnown RBP13.24□□□□□ -0.29
HIF3A-217ENST00000600236 MAP4K1Q92918 833 aa13.24□□□□□ -0.29
HIF3A-217ENST00000600236 MTA3Q9BTC8 594 aa13.24□□□□□ -0.29
HIF3A-217ENST00000600236 PRDM12Q9H4Q4 367 aa13.24□□□□□ -0.29
HIF3A-217ENST00000600236 RBM8AQ9Y5S9 174 aaKnown RBP13.24□□□□□ -0.29
HIF3A-217ENST00000600236 KIF28PB7ZC32 967 aa13.23□□□□□ -0.29
HIF3A-217ENST00000600236 OPLAHO14841 1288 aa13.23□□□□□ -0.29
HIF3A-217ENST00000600236 PPP1R11O60927 126 aaPredicted RBP13.23□□□□□ -0.29
HIF3A-217ENST00000600236 STAM2O75886 525 aa13.23□□□□□ -0.29
HIF3A-217ENST00000600236 BAIAP3O94812 1187 aa13.23□□□□□ -0.29
HIF3A-217ENST00000600236 TGFB3P10600 412 aa13.23□□□□□ -0.29
HIF3A-217ENST00000600236 PSEN2P49810 448 aa13.23□□□□□ -0.29
HIF3A-217ENST00000600236 MFSD10Q14728 455 aa13.23□□□□□ -0.29
HIF3A-217ENST00000600236 VSIG10LQ86VR7 867 aa13.23□□□□□ -0.29
HIF3A-217ENST00000600236 FCHSD1Q86WN1 690 aa13.23□□□□□ -0.29
HIF3A-217ENST00000600236 TMTC2Q8N394 836 aa13.23□□□□□ -0.29
HIF3A-217ENST00000600236 PHOSPHO2Q8TCD6 241 aa13.23□□□□□ -0.29
HIF3A-217ENST00000600236 CUL5Q93034 780 aa13.23□□□□□ -0.29
HIF3A-217ENST00000600236 SPATA33Q96N06 139 aa13.23□□□□□ -0.29
HIF3A-217ENST00000600236 MAP3K14Q99558 947 aa13.23□□□□□ -0.29
HIF3A-217ENST00000600236 LZTS2Q9BRK4 669 aa13.23□□□□□ -0.29
HIF3A-217ENST00000600236 ALG1Q9BT22 464 aa13.23□□□□□ -0.29
HIF3A-217ENST00000600236 SEC63Q9UGP8 760 aaKnown RBP13.23□□□□□ -0.29
HIF3A-217ENST00000600236 GTF2IRD1Q9UHL9 959 aa13.23□□□□□ -0.29
HIF3A-217ENST00000600236 YBX2Q9Y2T7 364 aaKnown RBP13.23□□□□□ -0.29
HIF3A-217ENST00000600236 PPFIA4O75335 1185 aa13.22□□□□□ -0.29
HIF3A-217ENST00000600236 F2P00734 622 aa13.22□□□□□ -0.29
HIF3A-217ENST00000600236 SELPP16109 830 aa13.22□□□□□ -0.29
HIF3A-217ENST00000600236 IGFBP4P22692 258 aa13.22□□□□□ -0.29
HIF3A-217ENST00000600236 KCNJ6P48051 423 aa13.22□□□□□ -0.29
HIF3A-217ENST00000600236 GNAQP50148 359 aa13.22□□□□□ -0.29
HIF3A-217ENST00000600236 RABGGTBP53611 331 aa13.22□□□□□ -0.29
HIF3A-217ENST00000600236 KIAA0753Q2KHM9 967 aa13.22□□□□□ -0.29
HIF3A-217ENST00000600236 GDF6Q6KF10 455 aaPredicted RBP13.22□□□□□ -0.29
HIF3A-217ENST00000600236 NFXL1Q6ZNB6 911 aa13.22□□□□□ -0.29
HIF3A-217ENST00000600236 MB21D2Q8IYB1 491 aaPredicted RBP13.22□□□□□ -0.29
HIF3A-217ENST00000600236 PPP1R13LQ8WUF5 828 aa13.22□□□□□ -0.29
HIF3A-217ENST00000600236 KAT2BQ92831 832 aa13.22□□□□□ -0.29
HIF3A-217ENST00000600236 RRP36Q96EU6 259 aaKnown RBP13.22□□□□□ -0.29
HIF3A-217ENST00000600236 MLXIPQ9HAP2 919 aa13.22□□□□□ -0.29
HIF3A-217ENST00000600236 CCDC69A6NI79 296 aa13.21□□□□□ -0.29
HIF3A-217ENST00000600236 CYTH3O43739 400 aa13.21□□□□□ -0.29
HIF3A-217ENST00000600236 GGPS1O95749 300 aa13.21□□□□□ -0.29
HIF3A-217ENST00000600236 ZNF286BP0CG31 522 aa13.21□□□□□ -0.29
HIF3A-217ENST00000600236 CALM1P0DP23 149 aa13.21□□□□□ -0.29
HIF3A-217ENST00000600236 CALM2P0DP24 149 aa13.21□□□□□ -0.29
HIF3A-217ENST00000600236 CALM3P0DP25 149 aa13.21□□□□□ -0.29
HIF3A-217ENST00000600236 SMARCA1P28370 1054 aa13.21□□□□□ -0.29
HIF3A-217ENST00000600236 MCM5P33992 734 aa13.21□□□□□ -0.29
HIF3A-217ENST00000600236 CELF3Q5SZQ8 465 aaKnown RBP13.21□□□□□ -0.29
HIF3A-217ENST00000600236 MYSM1Q5VVJ2 828 aa13.21□□□□□ -0.29
HIF3A-217ENST00000600236 LRRC8DQ7L1W4 858 aa13.21□□□□□ -0.29
HIF3A-217ENST00000600236 ZNF654Q8IZM8 581 aa13.21□□□□□ -0.29
HIF3A-217ENST00000600236 SMARCC2Q8TAQ2 1214 aa13.21□□□□□ -0.29
HIF3A-217ENST00000600236 IGDCC4Q8TDY8 1250 aa13.21□□□□□ -0.29
HIF3A-217ENST00000600236 PPM1EQ8WY54 764 aa13.21□□□□□ -0.29
HIF3A-217ENST00000600236 TMEM87BQ96K49 555 aa13.21□□□□□ -0.29
HIF3A-217ENST00000600236 SPZ1Q9BXG8 430 aa13.21□□□□□ -0.29
HIF3A-217ENST00000600236 TSPYL2Q9H2G4 693 aaPredicted RBP13.21□□□□□ -0.29
HIF3A-217ENST00000600236 SENP2Q9HC62 589 aa13.21□□□□□ -0.29
Retrieved 100 of 20,778 RNA–protein pairs in 44.3 ms