RNA–Protein interactions for RNA: ENST00000590181.5

LIG3-212, Transcript of DNA ligase 3, humanhuman

TSL 1 (best)

Gene LIG3, Length 1,156 nt, Biotype retained intron, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LIG3-212ENST00000590181 MRPS5P82675 430 aaKnown RBP12.15□□□□□ -0.46
LIG3-212ENST00000590181 ADGRE1Q14246 886 aa12.15□□□□□ -0.46
LIG3-212ENST00000590181 XRRA1Q6P2D8 792 aa12.15□□□□□ -0.46
LIG3-212ENST00000590181 NFXL1Q6ZNB6 911 aa12.15□□□□□ -0.46
LIG3-212ENST00000590181 C16orf59Q7L2K0 433 aa12.15□□□□□ -0.46
LIG3-212ENST00000590181 ZNF654Q8IZM8 581 aa12.15□□□□□ -0.46
LIG3-212ENST00000590181 SYTL5Q8TDW5 730 aaPredicted RBP12.15□□□□□ -0.46
LIG3-212ENST00000590181 VTI1AQ96AJ9 217 aa12.15□□□□□ -0.46
LIG3-212ENST00000590181 CHMP4CQ96CF2 233 aa12.15□□□□□ -0.46
LIG3-212ENST00000590181 RRP36Q96EU6 259 aaKnown RBP12.15□□□□□ -0.46
LIG3-212ENST00000590181 NKX2-4Q9H2Z4 354 aa12.15□□□□□ -0.46
LIG3-212ENST00000590181 LY9Q9HBG7 655 aa12.15□□□□□ -0.46
LIG3-212ENST00000590181 VAT1LQ9HCJ6 419 aa12.15□□□□□ -0.46
LIG3-212ENST00000590181 GPHNQ9NQX3 736 aaPredicted RBP12.15□□□□□ -0.46
LIG3-212ENST00000590181 SEC63Q9UGP8 760 aaKnown RBP12.15□□□□□ -0.46
LIG3-212ENST00000590181 MSRAQ9UJ68 235 aa12.15□□□□□ -0.46
LIG3-212ENST00000590181 SLC12A7Q9Y666 1083 aa12.15□□□□□ -0.46
LIG3-212ENST00000590181 KIAA1217Q5T5P2 1943 aa12.15□□□□□ -0.46
LIG3-212ENST00000590181 SCN5AQ14524 2016 aa12.15□□□□□ -0.47
LIG3-212ENST00000590181 A6NJR5 290 aa12.14□□□□□ -0.47
LIG3-212ENST00000590181 GCOM1H8Y6P7 765 aaPredicted RBP12.14□□□□□ -0.47
LIG3-212ENST00000590181 DYNC1LI2O43237 492 aaPredicted RBP12.14□□□□□ -0.47
LIG3-212ENST00000590181 CENPBP07199 599 aaPredicted RBP12.14□□□□□ -0.47
LIG3-212ENST00000590181 POLR2MP0CAP2 368 aa12.14□□□□□ -0.47
LIG3-212ENST00000590181 SMPD1P17405 629 aa12.14□□□□□ -0.47
LIG3-212ENST00000590181 PTPN11Q06124 597 aaPredicted RBP12.14□□□□□ -0.47
LIG3-212ENST00000590181 ARHGEF16Q5VV41 709 aa12.14□□□□□ -0.47
LIG3-212ENST00000590181 ZNF365Q70YC5 407 aa12.14□□□□□ -0.47
LIG3-212ENST00000590181 DHX32Q7L7V1 743 aaKnown RBP12.14□□□□□ -0.47
LIG3-212ENST00000590181 RASGRP2Q7LDG7 609 aa12.14□□□□□ -0.47
LIG3-212ENST00000590181 FAM126BQ8IXS8 530 aa12.14□□□□□ -0.47
LIG3-212ENST00000590181 STAG2Q8N3U4 1231 aa12.14□□□□□ -0.47
LIG3-212ENST00000590181 FBXL16Q8N461 479 aa12.14□□□□□ -0.47
LIG3-212ENST00000590181 SLC43A3Q8NBI5 491 aa12.14□□□□□ -0.47
LIG3-212ENST00000590181 CUL5Q93034 780 aa12.14□□□□□ -0.47
LIG3-212ENST00000590181 EMID1Q96A84 441 aaPredicted RBP12.14□□□□□ -0.47
LIG3-212ENST00000590181 NEK1Q96PY6 1258 aa12.14□□□□□ -0.47
LIG3-212ENST00000590181 GLT8D2Q9H1C3 349 aa12.14□□□□□ -0.47
LIG3-212ENST00000590181 MTIF3Q9H2K0 278 aaKnown RBP12.14□□□□□ -0.47
LIG3-212ENST00000590181 RBM28Q9NW13 759 aaKnown RBP12.14□□□□□ -0.47
LIG3-212ENST00000590181 ASTN1O14525 1302 aa12.13□□□□□ -0.47
LIG3-212ENST00000590181 CCDC196A0A1B0GTZ2 297 aa12.13□□□□□ -0.47
LIG3-212ENST00000590181 PIK3CDO00329 1044 aa12.13□□□□□ -0.47
LIG3-212ENST00000590181 SH2B2O14492 632 aaPredicted RBP12.13□□□□□ -0.47
LIG3-212ENST00000590181 CTAGE5O15320 804 aa12.13□□□□□ -0.47
LIG3-212ENST00000590181 NR3C2P08235 984 aa12.13□□□□□ -0.47
LIG3-212ENST00000590181 PSMA5P28066 241 aa12.13□□□□□ -0.47
LIG3-212ENST00000590181 CYP2C18P33260 490 aa12.13□□□□□ -0.47
LIG3-212ENST00000590181 ANTXR2P58335 489 aa12.13□□□□□ -0.47
LIG3-212ENST00000590181 SLC30A10Q6XR72 485 aa12.13□□□□□ -0.47
LIG3-212ENST00000590181 MICALL1Q8N3F8 863 aa12.13□□□□□ -0.47
LIG3-212ENST00000590181 FANCBQ8NB91 859 aa12.13□□□□□ -0.47
LIG3-212ENST00000590181 KCNB2Q92953 911 aa12.13□□□□□ -0.47
LIG3-212ENST00000590181 FAM122AQ96E09 287 aa12.13□□□□□ -0.47
LIG3-212ENST00000590181 IL23AQ9NPF7 189 aa12.13□□□□□ -0.47
LIG3-212ENST00000590181 PPP4R2Q9NY27 417 aa12.13□□□□□ -0.47
LIG3-212ENST00000590181 CXXC1Q9P0U4 656 aaPredicted RBP12.13□□□□□ -0.47
LIG3-212ENST00000590181 YBX2Q9Y2T7 364 aaKnown RBP12.13□□□□□ -0.47
LIG3-212ENST00000590181 PTPRSQ13332 1948 aa12.12□□□□□ -0.47
LIG3-212ENST00000590181 hCG_1984214I3L0E3 225 aa12.12□□□□□ -0.47
LIG3-212ENST00000590181 CFBP00751 764 aa12.12□□□□□ -0.47
LIG3-212ENST00000590181 TXNP10599 105 aaKnown RBP12.12□□□□□ -0.47
LIG3-212ENST00000590181 ITGA7Q13683 1181 aa12.12□□□□□ -0.47
LIG3-212ENST00000590181 LAMC2Q13753 1193 aa12.12□□□□□ -0.47
LIG3-212ENST00000590181 GNPTABQ3T906 1256 aa12.12□□□□□ -0.47
LIG3-212ENST00000590181 NFRKBQ6P4R8 1299 aa12.12□□□□□ -0.47
LIG3-212ENST00000590181 VSIG10LQ86VR7 867 aa12.12□□□□□ -0.47
LIG3-212ENST00000590181 FBXO16Q8IX29 292 aaPredicted RBP12.12□□□□□ -0.47
LIG3-212ENST00000590181 ZNF713Q8N859 430 aaPredicted RBP12.12□□□□□ -0.47
LIG3-212ENST00000590181 HERVK_113Q902F9 699 aa12.12□□□□□ -0.47
LIG3-212ENST00000590181 NECAB3Q96P71 396 aaPredicted RBP12.12□□□□□ -0.47
LIG3-212ENST00000590181 HIPK3Q9H422 1215 aa12.12□□□□□ -0.47
LIG3-212ENST00000590181 SLC28A3Q9HAS3 691 aa12.12□□□□□ -0.47
LIG3-212ENST00000590181 PXMP2Q9NR77 195 aa12.12□□□□□ -0.47
LIG3-212ENST00000590181 UMODL1Q5DID0 1318 aa12.11□□□□□ -0.47
LIG3-212ENST00000590181 MAFGO15525 162 aa12.11□□□□□ -0.47
LIG3-212ENST00000590181 GH1P01241 217 aa12.11□□□□□ -0.47
LIG3-212ENST00000590181 CASTP20810 708 aaKnown RBP12.11□□□□□ -0.47
LIG3-212ENST00000590181 BEX3Q00994 111 aa12.11□□□□□ -0.47
LIG3-212ENST00000590181 EXOSC10Q01780 885 aaKnown RBP12.11□□□□□ -0.47
LIG3-212ENST00000590181 PPP2R2DQ66LE6 453 aa12.11□□□□□ -0.47
LIG3-212ENST00000590181 MCTP2Q6DN12 878 aa12.11□□□□□ -0.47
LIG3-212ENST00000590181 CCDC62Q6P9F0 684 aa12.11□□□□□ -0.47
LIG3-212ENST00000590181 EEPD1Q7L9B9 569 aa12.11□□□□□ -0.47
LIG3-212ENST00000590181 GIMAP8Q8ND71 665 aaPredicted RBP12.11□□□□□ -0.47
LIG3-212ENST00000590181 TAAR1Q96RJ0 339 aa12.11□□□□□ -0.47
LIG3-212ENST00000590181 PIGSQ96S52 555 aa12.11□□□□□ -0.47
LIG3-212ENST00000590181 MTG1Q9BT17 334 aaPredicted RBP12.11□□□□□ -0.47
LIG3-212ENST00000590181 TSPYL2Q9H2G4 693 aaPredicted RBP12.11□□□□□ -0.47
LIG3-212ENST00000590181 PDGFCQ9NRA1 345 aa12.11□□□□□ -0.47
LIG3-212ENST00000590181 C11orf97A0A1B0GVM6 126 aaPredicted RBP12.1□□□□□ -0.47
LIG3-212ENST00000590181 CYTH3O43739 400 aa12.1□□□□□ -0.47
LIG3-212ENST00000590181 PPFIA4O75335 1185 aa12.1□□□□□ -0.47
LIG3-212ENST00000590181 PARNO95453 639 aaKnown RBP12.1□□□□□ -0.47
LIG3-212ENST00000590181 CD4P01730 458 aa12.1□□□□□ -0.47
LIG3-212ENST00000590181 CCND2P30279 289 aa12.1□□□□□ -0.47
LIG3-212ENST00000590181 PURAQ00577 322 aaKnown RBP12.1□□□□□ -0.47
LIG3-212ENST00000590181 DGKDQ16760 1214 aa12.1□□□□□ -0.47
LIG3-212ENST00000590181 CHST3Q7LGC8 479 aa12.1□□□□□ -0.47
LIG3-212ENST00000590181 OTOP2Q7RTS6 562 aa12.1□□□□□ -0.47
Retrieved 100 of 20,778 RNA–protein pairs in 15 ms