RNA–Protein interactions for RNA: ENST00000580642.2

SS18-215, Transcript of SS18, nBAF chromatin remodeling complex subunit, humanhuman

TSL 4

Gene SS18, Length 545 nt, Biotype nonsense mediated decay, Subcellular localisation Cytoplasm, Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SS18-215ENST00000580642 DNAJC25-GNG10A0A024R161 153 aa17.29■□□□□ 0.36
SS18-215ENST00000580642 POTEB2H3BUK9 544 aa17.29■□□□□ 0.36
SS18-215ENST00000580642 CA12O43570 354 aa17.29■□□□□ 0.36
SS18-215ENST00000580642 TDP2O95551 362 aa17.29■□□□□ 0.36
SS18-215ENST00000580642 CCND2P30279 289 aa17.29■□□□□ 0.36
SS18-215ENST00000580642 FAM160A1Q05DH4 1040 aa17.29■□□□□ 0.36
SS18-215ENST00000580642 TMEM266Q2M3C6 531 aa17.29■□□□□ 0.36
SS18-215ENST00000580642 RESP18Q5W5W9 173 aa17.29■□□□□ 0.36
SS18-215ENST00000580642 VSIG10LQ86VR7 867 aa17.29■□□□□ 0.36
SS18-215ENST00000580642 CCAR1Q8IX12 1150 aaKnown RBP17.29■□□□□ 0.36
SS18-215ENST00000580642 ANKRD13CQ8N6S4 541 aa17.29■□□□□ 0.36
SS18-215ENST00000580642 FAM133AQ8N9E0 248 aa17.29■□□□□ 0.36
SS18-215ENST00000580642 CDHR1Q96JP9 859 aa17.29■□□□□ 0.36
SS18-215ENST00000580642 CAPNS2Q96L46 248 aa17.29■□□□□ 0.36
SS18-215ENST00000580642 TAAR1Q96RJ0 339 aa17.29■□□□□ 0.36
SS18-215ENST00000580642 MMP19Q99542 508 aa17.29■□□□□ 0.36
SS18-215ENST00000580642 CFHR5Q9BXR6 569 aa17.29■□□□□ 0.36
SS18-215ENST00000580642 DDX19AQ9NUU7 478 aaKnown RBP17.29■□□□□ 0.36
SS18-215ENST00000580642 IGLV3-22A0A075B6J6 115 aa17.28■□□□□ 0.36
SS18-215ENST00000580642 PGM5Q15124 567 aa17.28■□□□□ 0.36
SS18-215ENST00000580642 C17orf99Q6UX52 265 aa17.28■□□□□ 0.36
SS18-215ENST00000580642 GPT2Q8TD30 523 aa17.28■□□□□ 0.36
SS18-215ENST00000580642 LENG9Q96B70 501 aa17.28■□□□□ 0.36
SS18-215ENST00000580642 MXRA8Q9BRK3 442 aa17.28■□□□□ 0.36
SS18-215ENST00000580642 TMEM60Q9H2L4 133 aa17.28■□□□□ 0.36
SS18-215ENST00000580642 USP25Q9UHP3 1055 aa17.28■□□□□ 0.36
SS18-215ENST00000580642 HPSEQ9Y251 543 aa17.28■□□□□ 0.36
SS18-215ENST00000580642 DIS3Q9Y2L1 958 aaKnown RBP17.28■□□□□ 0.36
SS18-215ENST00000580642 UBIAD1Q9Y5Z9 338 aa17.28■□□□□ 0.36
SS18-215ENST00000580642 FAM86B1E9PN63 330 aa17.27■□□□□ 0.36
SS18-215ENST00000580642 SLC37A4O43826 429 aa17.27■□□□□ 0.36
SS18-215ENST00000580642 MARCH6O60337 910 aa17.27■□□□□ 0.36
SS18-215ENST00000580642 NR3C2P08235 984 aa17.27■□□□□ 0.36
SS18-215ENST00000580642 FAM86B2P0C5J1 330 aa17.27■□□□□ 0.36
SS18-215ENST00000580642 TXLNAP40222 546 aa17.27■□□□□ 0.36
SS18-215ENST00000580642 PRR16Q569H4 304 aa17.27■□□□□ 0.36
SS18-215ENST00000580642 CYP4F22Q6NT55 531 aa17.27■□□□□ 0.36
SS18-215ENST00000580642 SHC4Q6S5L8 630 aa17.27■□□□□ 0.36
SS18-215ENST00000580642 PAXIP1Q6ZW49 1069 aaPredicted RBP17.27■□□□□ 0.36
SS18-215ENST00000580642 ZNF467Q7Z7K2 595 aaPredicted RBP17.27■□□□□ 0.36
SS18-215ENST00000580642 NLRX1Q86UT6 975 aa17.27■□□□□ 0.36
SS18-215ENST00000580642 POTEDQ86YR6 584 aa17.27■□□□□ 0.36
SS18-215ENST00000580642 ELOA2Q8IYF1 753 aaPredicted RBP17.27■□□□□ 0.36
SS18-215ENST00000580642 KCTD17Q8N5Z5 321 aa17.27■□□□□ 0.36
SS18-215ENST00000580642 IGSF22Q8N9C0 903 aa17.27■□□□□ 0.36
SS18-215ENST00000580642 FSIP1Q8NA03 581 aa17.27■□□□□ 0.36
SS18-215ENST00000580642 ETNPPLQ8TBG4 499 aa17.27■□□□□ 0.36
SS18-215ENST00000580642 GPRASP2Q96D09 838 aa17.27■□□□□ 0.36
SS18-215ENST00000580642 CCDC34Q96HJ3 373 aa17.27■□□□□ 0.36
SS18-215ENST00000580642 TIGD1Q96MW7 591 aa17.27■□□□□ 0.36
SS18-215ENST00000580642 JADE2Q9NQC1 790 aa17.27■□□□□ 0.36
SS18-215ENST00000580642 PCDHA12Q9UN75 941 aa17.27■□□□□ 0.36
SS18-215ENST00000580642 IVNS1ABPQ9Y6Y0 642 aa17.27■□□□□ 0.36
SS18-215ENST00000580642 VWA3AA6NCI4 1184 aa17.26■□□□□ 0.35
SS18-215ENST00000580642 EIF3JO75822 258 aaKnown RBP17.26■□□□□ 0.35
SS18-215ENST00000580642 LETM1O95202 739 aaPredicted RBP17.26■□□□□ 0.35
SS18-215ENST00000580642 EDNRBP24530 442 aa17.26■□□□□ 0.35
SS18-215ENST00000580642 GNPTABQ3T906 1256 aa17.26■□□□□ 0.35
SS18-215ENST00000580642 ENGASEQ8NFI3 743 aa17.26■□□□□ 0.35
SS18-215ENST00000580642 RIT2Q99578 217 aa17.26■□□□□ 0.35
SS18-215ENST00000580642 CCSER1Q9C0I3 900 aa17.26■□□□□ 0.35
SS18-215ENST00000580642 CSRNP2Q9H175 543 aa17.26■□□□□ 0.35
SS18-215ENST00000580642 SLC5A4Q9NY91 659 aa17.26■□□□□ 0.35
SS18-215ENST00000580642 SMCHD1A6NHR9 2005 aa17.26■□□□□ 0.35
SS18-215ENST00000580642 SLC15A5A6NIM6 579 aa17.25■□□□□ 0.35
SS18-215ENST00000580642 EIF2AK2P19525 551 aaKnown RBP17.25■□□□□ 0.35
SS18-215ENST00000580642 GRB14Q14449 540 aa17.25■□□□□ 0.35
SS18-215ENST00000580642 STXBP2Q15833 593 aa17.25■□□□□ 0.35
SS18-215ENST00000580642 PLEKHH3Q7Z736 793 aa17.25■□□□□ 0.35
SS18-215ENST00000580642 PLA2G4DQ86XP0 818 aa17.25■□□□□ 0.35
SS18-215ENST00000580642 FMR1NBQ8N0W7 255 aaPredicted RBP17.25■□□□□ 0.35
SS18-215ENST00000580642 MSL3Q8N5Y2 521 aaKnown RBP17.25■□□□□ 0.35
SS18-215ENST00000580642 MORC4Q8TE76 937 aa17.25■□□□□ 0.35
SS18-215ENST00000580642 HAS1Q92839 578 aa17.25■□□□□ 0.35
SS18-215ENST00000580642 SLC5A5Q92911 643 aa17.25■□□□□ 0.35
SS18-215ENST00000580642 CLIC6Q96NY7 704 aa17.25■□□□□ 0.35
SS18-215ENST00000580642 INPP4AQ96PE3 977 aaPredicted RBP17.25■□□□□ 0.35
SS18-215ENST00000580642 WDR11Q9BZH6 1224 aa17.25■□□□□ 0.35
SS18-215ENST00000580642 PORCNQ9H237 461 aa17.25■□□□□ 0.35
SS18-215ENST00000580642 KCNH3Q9ULD8 1083 aa17.25■□□□□ 0.35
SS18-215ENST00000580642 ASB14A6NK59 587 aa17.24■□□□□ 0.35
SS18-215ENST00000580642 CTAGE5O15320 804 aa17.24■□□□□ 0.35
SS18-215ENST00000580642 KINO60870 393 aaKnown RBP17.24■□□□□ 0.35
SS18-215ENST00000580642 PFKFB1P16118 471 aa17.24■□□□□ 0.35
SS18-215ENST00000580642 ITGB5P18084 799 aa17.24■□□□□ 0.35
SS18-215ENST00000580642 TXKP42681 527 aa17.24■□□□□ 0.35
SS18-215ENST00000580642 SYKP43405 635 aa17.24■□□□□ 0.35
SS18-215ENST00000580642 ALDH5A1P51649 535 aaPredicted RBP17.24■□□□□ 0.35
SS18-215ENST00000580642 MRPS9P82933 396 aaKnown RBP17.24■□□□□ 0.35
SS18-215ENST00000580642 IRF5Q13568 498 aa17.24■□□□□ 0.35
SS18-215ENST00000580642 SNW1Q13573 536 aaKnown RBP17.24■□□□□ 0.35
SS18-215ENST00000580642 IL17AQ16552 155 aa17.24■□□□□ 0.35
SS18-215ENST00000580642 TTC12Q9H892 705 aaPredicted RBP17.24■□□□□ 0.35
SS18-215ENST00000580642 EFCC1Q9HA90 598 aa17.24■□□□□ 0.35
SS18-215ENST00000580642 TBC1D22BQ9NU19 505 aa17.24■□□□□ 0.35
SS18-215ENST00000580642 MSH4O15457 936 aa17.23■□□□□ 0.35
SS18-215ENST00000580642 ICAM3P32942 547 aa17.23■□□□□ 0.35
SS18-215ENST00000580642 UBA7P41226 1012 aa17.23■□□□□ 0.35
SS18-215ENST00000580642 CRHR2Q13324 411 aa17.23■□□□□ 0.35
SS18-215ENST00000580642 MTMR1Q13613 665 aa17.23■□□□□ 0.35
Retrieved 100 of 20,778 RNA–protein pairs in 23 ms