RNA–Protein interactions for RNA: ENST00000580002.5

SHMT1-207, Transcript of serine hydroxymethyltransferase 1, humanhuman

TSL 2

Gene SHMT1, Length 1,759 nt, Biotype nonsense mediated decay, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SHMT1-207ENST00000580002 GCFC2P16383 781 aaKnown RBP28.45■■■□□ 2.14
SHMT1-207ENST00000580002 CMA1P23946 247 aa28.45■■■□□ 2.14
SHMT1-207ENST00000580002 CRHR2Q13324 411 aa28.45■■■□□ 2.14
SHMT1-207ENST00000580002 RESP18Q5W5W9 173 aa28.45■■■□□ 2.14
SHMT1-207ENST00000580002 CAVIN1Q6NZI2 390 aaKnown RBP28.45■■■□□ 2.14
SHMT1-207ENST00000580002 PANK2Q9BZ23 570 aa28.45■■■□□ 2.14
SHMT1-207ENST00000580002 GZF1Q9H116 711 aaPredicted RBP28.45■■■□□ 2.14
SHMT1-207ENST00000580002 ARP10275 920 aa28.44■■■□□ 2.14
SHMT1-207ENST00000580002 TECP42680 631 aa28.44■■■□□ 2.14
SHMT1-207ENST00000580002 Q4G0T1 1027 aa28.44■■■□□ 2.14
SHMT1-207ENST00000580002 ARL6IP4Q66PJ3 421 aaKnown RBP28.44■■■□□ 2.14
SHMT1-207ENST00000580002 MOXD1Q6UVY6 613 aa28.44■■■□□ 2.14
SHMT1-207ENST00000580002 SHCBP1Q8NEM2 672 aa28.44■■■□□ 2.14
SHMT1-207ENST00000580002 MRPS27Q92552 414 aaKnown RBP28.44■■■□□ 2.14
SHMT1-207ENST00000580002 FGD4Q96M96 766 aa28.44■■■□□ 2.14
SHMT1-207ENST00000580002 MMP19Q99542 508 aa28.44■■■□□ 2.14
SHMT1-207ENST00000580002 MROH8Q9H579 483 aa28.44■■■□□ 2.14
SHMT1-207ENST00000580002 EHMT1Q9H9B1 1298 aa28.44■■■□□ 2.14
SHMT1-207ENST00000580002 MSH4O15457 936 aa28.43■■■□□ 2.14
SHMT1-207ENST00000580002 PFKFB1P16118 471 aa28.43■■■□□ 2.14
SHMT1-207ENST00000580002 SNW1Q13573 536 aaKnown RBP28.43■■■□□ 2.14
SHMT1-207ENST00000580002 FAM110CQ1W6H9 321 aa28.43■■■□□ 2.14
SHMT1-207ENST00000580002 DTHD1Q6ZMT9 781 aa28.43■■■□□ 2.14
SHMT1-207ENST00000580002 ENGASEQ8NFI3 743 aa28.43■■■□□ 2.14
SHMT1-207ENST00000580002 ETNPPLQ8TBG4 499 aa28.43■■■□□ 2.14
SHMT1-207ENST00000580002 FERMT2Q96AC1 680 aa28.43■■■□□ 2.14
SHMT1-207ENST00000580002 WDR11Q9BZH6 1224 aa28.43■■■□□ 2.14
SHMT1-207ENST00000580002 KCNMB3Q9NPA1 279 aa28.43■■■□□ 2.14
SHMT1-207ENST00000580002 DACT1Q9NYF0 836 aa28.43■■■□□ 2.14
SHMT1-207ENST00000580002 POTEB2H3BUK9 544 aa28.42■■■□□ 2.14
SHMT1-207ENST00000580002 NR3C2P08235 984 aa28.42■■■□□ 2.14
SHMT1-207ENST00000580002 NOGQ13253 232 aa28.42■■■□□ 2.14
SHMT1-207ENST00000580002 SKOR2Q2VWA4 1001 aaPredicted RBP28.42■■■□□ 2.14
SHMT1-207ENST00000580002 CEP55Q53EZ4 464 aa28.42■■■□□ 2.14
SHMT1-207ENST00000580002 PCNX4Q63HM2 1172 aa28.42■■■□□ 2.14
SHMT1-207ENST00000580002 C17orf99Q6UX52 265 aa28.42■■■□□ 2.14
SHMT1-207ENST00000580002 FAM133AQ8N9E0 248 aa28.42■■■□□ 2.14
SHMT1-207ENST00000580002 ZCCHC17Q9NP64 241 aaKnown RBP28.42■■■□□ 2.14
SHMT1-207ENST00000580002 TLR2O60603 784 aa28.42■■■□□ 2.14
SHMT1-207ENST00000580002 MBD3O95983 291 aa28.42■■■□□ 2.14
SHMT1-207ENST00000580002 ORC2Q13416 577 aaPredicted RBP28.42■■■□□ 2.14
SHMT1-207ENST00000580002 PLA2G4DQ86XP0 818 aa28.42■■■□□ 2.14
SHMT1-207ENST00000580002 NSUN6Q8TEA1 469 aaKnown RBP28.42■■■□□ 2.14
SHMT1-207ENST00000580002 MXRA8Q9BRK3 442 aa28.42■■■□□ 2.14
SHMT1-207ENST00000580002 PFASO15067 1338 aa28.42■■■□□ 2.14
SHMT1-207ENST00000580002 A0A087X0B3 334 aa28.41■■■□□ 2.14
SHMT1-207ENST00000580002 MEIS1O00470 390 aa28.41■■■□□ 2.14
SHMT1-207ENST00000580002 FCER1AP12319 257 aa28.41■■■□□ 2.14
SHMT1-207ENST00000580002 PRPHP41219 470 aa28.41■■■□□ 2.14
SHMT1-207ENST00000580002 VEGFBP49765 207 aa28.41■■■□□ 2.14
SHMT1-207ENST00000580002 CCNA1P78396 465 aa28.41■■■□□ 2.14
SHMT1-207ENST00000580002 VSIG10LQ86VR7 867 aa28.41■■■□□ 2.14
SHMT1-207ENST00000580002 ZNF579Q8NAF0 562 aaKnown RBP28.41■■■□□ 2.14
SHMT1-207ENST00000580002 SYMPKQ92797 1274 aaKnown RBP28.41■■■□□ 2.14
SHMT1-207ENST00000580002 UBIAD1Q9Y5Z9 338 aa28.41■■■□□ 2.14
SHMT1-207ENST00000580002 DNAJC25-GNG10A0A024R161 153 aa28.4■■■□□ 2.14
SHMT1-207ENST00000580002 LAD1O00515 517 aa28.4■■■□□ 2.14
SHMT1-207ENST00000580002 KCTD2Q14681 263 aa28.4■■■□□ 2.14
SHMT1-207ENST00000580002 DHX30Q7L2E3 1194 aaKnown RBP eCLIP28.4■■■□□ 2.14
SHMT1-207ENST00000580002 NAP1L4Q99733 375 aaKnown RBP28.4■■■□□ 2.14
SHMT1-207ENST00000580002 TTC12Q9H892 705 aaPredicted RBP28.4■■■□□ 2.14
SHMT1-207ENST00000580002 HPSEQ9Y251 543 aa28.4■■■□□ 2.14
SHMT1-207ENST00000580002 COPB2P35606 906 aa28.39■■■□□ 2.14
SHMT1-207ENST00000580002 GPR142Q7Z601 462 aa28.39■■■□□ 2.14
SHMT1-207ENST00000580002 FMR1NBQ8N0W7 255 aaPredicted RBP28.39■■■□□ 2.14
SHMT1-207ENST00000580002 ZFYVE28Q9HCC9 887 aa28.39■■■□□ 2.14
SHMT1-207ENST00000580002 PKD2L1Q9P0L9 805 aa28.39■■■□□ 2.14
SHMT1-207ENST00000580002 COBLO75128 1261 aa28.39■■■□□ 2.13
SHMT1-207ENST00000580002 RGS20O76081 388 aa28.39■■■□□ 2.13
SHMT1-207ENST00000580002 ALDH5A1P51649 535 aaPredicted RBP28.39■■■□□ 2.13
SHMT1-207ENST00000580002 POTEMA6NI47 508 aa28.38■■■□□ 2.13
SHMT1-207ENST00000580002 MARCH6O60337 910 aa28.38■■■□□ 2.13
SHMT1-207ENST00000580002 PDILTQ8N807 584 aa28.38■■■□□ 2.13
SHMT1-207ENST00000580002 CA12O43570 354 aa28.37■■■□□ 2.13
SHMT1-207ENST00000580002 ADORA2AP29274 412 aa28.37■■■□□ 2.13
SHMT1-207ENST00000580002 CCDC73Q6ZRK6 1079 aa28.37■■■□□ 2.13
SHMT1-207ENST00000580002 FAM237AA0A1B0GTK4 181 aa28.37■■■□□ 2.13
SHMT1-207ENST00000580002 CCND2P30279 289 aa28.37■■■□□ 2.13
SHMT1-207ENST00000580002 LONP1P36776 959 aaKnown RBP28.37■■■□□ 2.13
SHMT1-207ENST00000580002 FAM160A1Q05DH4 1040 aa28.37■■■□□ 2.13
SHMT1-207ENST00000580002 CAMK4Q16566 473 aa28.37■■■□□ 2.13
SHMT1-207ENST00000580002 NUDT12Q9BQG2 462 aa28.37■■■□□ 2.13
SHMT1-207ENST00000580002 JADE2Q9NQC1 790 aa28.37■■■□□ 2.13
SHMT1-207ENST00000580002 KCNH7Q9NS40 1196 aa28.37■■■□□ 2.13
SHMT1-207ENST00000580002 KCNH3Q9ULD8 1083 aa28.37■■■□□ 2.13
SHMT1-207ENST00000580002 ZFP91-CNTFA0A0A6YYC7 529 aaPredicted RBP28.36■■■□□ 2.13
SHMT1-207ENST00000580002 CTGFP29279 349 aa28.36■■■□□ 2.13
SHMT1-207ENST00000580002 SEMA3FQ13275 785 aa28.36■■■□□ 2.13
SHMT1-207ENST00000580002 IGSF22Q8N9C0 903 aa28.36■■■□□ 2.13
SHMT1-207ENST00000580002 DNERQ8NFT8 737 aa28.36■■■□□ 2.13
SHMT1-207ENST00000580002 MAF1Q9H063 256 aa28.36■■■□□ 2.13
SHMT1-207ENST00000580002 BCAS3Q9H6U6 928 aa28.36■■■□□ 2.13
SHMT1-207ENST00000580002 PCDHA12Q9UN75 941 aa28.36■■■□□ 2.13
SHMT1-207ENST00000580002 ZNFX1Q9P2E3 1918 aaKnown RBP28.36■■■□□ 2.13
SHMT1-207ENST00000580002 ZNF202O95125 648 aa28.35■■■□□ 2.13
SHMT1-207ENST00000580002 TBC1D8O95759 1140 aa28.35■■■□□ 2.13
SHMT1-207ENST00000580002 FXR2P51116 673 aaKnown RBP eCLIP28.35■■■□□ 2.13
SHMT1-207ENST00000580002 PLIN2Q99541 437 aa28.35■■■□□ 2.13
SHMT1-207ENST00000580002 MMTAG2Q9BU76 263 aaKnown RBP28.35■■■□□ 2.13
SHMT1-207ENST00000580002 ATP9AO75110 1047 aa28.34■■■□□ 2.13
Retrieved 100 of 20,778 RNA–protein pairs in 14.5 ms