RNA–Protein interactions for RNA: ENST00000578519.5

SKA2-204, Transcript of spindle and kinetochore associated complex subunit 2, humanhuman

TSL 3

Gene SKA2, Length 894 nt, Biotype nonsense mediated decay, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SKA2-204ENST00000578519 KCNMB3Q9NPA1 279 aa12.45□□□□□ -0.42
SKA2-204ENST00000578519 PCDH10Q9P2E7 1040 aa12.45□□□□□ -0.42
SKA2-204ENST00000578519 CTNND2Q9UQB3 1225 aa12.45□□□□□ -0.42
SKA2-204ENST00000578519 UCHL5Q9Y5K5 329 aaKnown RBP eCLIP12.45□□□□□ -0.42
SKA2-204ENST00000578519 COL4A5P29400 1685 aa12.45□□□□□ -0.42
SKA2-204ENST00000578519 CFBP00751 764 aa12.44□□□□□ -0.42
SKA2-204ENST00000578519 SKILP12757 684 aa12.44□□□□□ -0.42
SKA2-204ENST00000578519 EEF1GP26641 437 aaKnown RBP12.44□□□□□ -0.42
SKA2-204ENST00000578519 FMR1Q06787 632 aaKnown RBP eCLIP12.44□□□□□ -0.42
SKA2-204ENST00000578519 GRB10Q13322 594 aa12.44□□□□□ -0.42
SKA2-204ENST00000578519 ZYXQ15942 572 aaKnown RBP12.44□□□□□ -0.42
SKA2-204ENST00000578519 SHROOM1Q2M3G4 852 aaPredicted RBP12.44□□□□□ -0.42
SKA2-204ENST00000578519 PRR16Q569H4 304 aa12.44□□□□□ -0.42
SKA2-204ENST00000578519 SPECC1LQ69YQ0 1117 aa12.44□□□□□ -0.42
SKA2-204ENST00000578519 FOXR2Q6PJQ5 311 aa12.44□□□□□ -0.42
SKA2-204ENST00000578519 SAMD7Q7Z3H4 446 aa12.44□□□□□ -0.42
SKA2-204ENST00000578519 LDHDQ86WU2 507 aa12.44□□□□□ -0.42
SKA2-204ENST00000578519 SCYL3Q8IZE3 742 aa12.44□□□□□ -0.42
SKA2-204ENST00000578519 HAS1Q92839 578 aa12.44□□□□□ -0.42
SKA2-204ENST00000578519 TEPSINQ96N21 525 aa12.44□□□□□ -0.42
SKA2-204ENST00000578519 PLIN2Q99541 437 aa12.44□□□□□ -0.42
SKA2-204ENST00000578519 MMTAG2Q9BU76 263 aaKnown RBP12.44□□□□□ -0.42
SKA2-204ENST00000578519 GPRC5DQ9NZD1 345 aa12.44□□□□□ -0.42
SKA2-204ENST00000578519 LIMA1Q9UHB6 759 aaKnown RBP12.44□□□□□ -0.42
SKA2-204ENST00000578519 NRBP1Q9UHY1 535 aa12.44□□□□□ -0.42
SKA2-204ENST00000578519 ZNF112Q9UJU3 913 aa12.44□□□□□ -0.42
SKA2-204ENST00000578519 CCPG1Q9ULG6 757 aa12.44□□□□□ -0.42
SKA2-204ENST00000578519 DNM3Q9UQ16 869 aa12.44□□□□□ -0.42
SKA2-204ENST00000578519 PITPNM2Q9BZ72 1349 aa12.43□□□□□ -0.42
SKA2-204ENST00000578519 A0A1B0GTH6 734 aa12.43□□□□□ -0.42
SKA2-204ENST00000578519 ATP1A3P13637 1013 aa12.43□□□□□ -0.42
SKA2-204ENST00000578519 PRKCSHP14314 528 aaPredicted RBP12.43□□□□□ -0.42
SKA2-204ENST00000578519 CCNE1P24864 410 aa12.43□□□□□ -0.42
SKA2-204ENST00000578519 PRCPP42785 496 aa12.43□□□□□ -0.42
SKA2-204ENST00000578519 STX17P56962 302 aa12.43□□□□□ -0.42
SKA2-204ENST00000578519 CDKAL1Q5VV42 579 aa12.43□□□□□ -0.42
SKA2-204ENST00000578519 POTEGQ6S5H5 508 aa12.43□□□□□ -0.42
SKA2-204ENST00000578519 FCHSD1Q86WN1 690 aa12.43□□□□□ -0.42
SKA2-204ENST00000578519 CACTINQ8WUQ7 758 aaKnown RBP12.43□□□□□ -0.42
SKA2-204ENST00000578519 IQCDQ96DY2 449 aa12.43□□□□□ -0.42
SKA2-204ENST00000578519 TRIM47Q96LD4 638 aa12.43□□□□□ -0.42
SKA2-204ENST00000578519 MTRQ99707 1265 aa12.43□□□□□ -0.42
SKA2-204ENST00000578519 WDR11Q9BZH6 1224 aa12.43□□□□□ -0.42
SKA2-204ENST00000578519 KCNF1Q9H3M0 494 aa12.43□□□□□ -0.42
SKA2-204ENST00000578519 TMOD4Q9NZQ9 345 aa12.43□□□□□ -0.42
SKA2-204ENST00000578519 PSDA5PKW4 1024 aaPredicted RBP12.42□□□□□ -0.42
SKA2-204ENST00000578519 LRRC10BA6NIK2 292 aa12.42□□□□□ -0.42
SKA2-204ENST00000578519 KLRC4O43908 158 aa12.42□□□□□ -0.42
SKA2-204ENST00000578519 KRT18P05783 430 aaKnown RBP12.42□□□□□ -0.42
SKA2-204ENST00000578519 RPA1P27694 616 aa12.42□□□□□ -0.42
SKA2-204ENST00000578519 CASP1P29466 404 aa12.42□□□□□ -0.42
SKA2-204ENST00000578519 SNAP25P60880 206 aa12.42□□□□□ -0.42
SKA2-204ENST00000578519 MCM6Q14566 821 aa12.42□□□□□ -0.42
SKA2-204ENST00000578519 NR1I3Q14994 352 aa12.42□□□□□ -0.42
SKA2-204ENST00000578519 TSR1Q2NL82 804 aaKnown RBP12.42□□□□□ -0.42
SKA2-204ENST00000578519 TKFCQ3LXA3 575 aa12.42□□□□□ -0.42
SKA2-204ENST00000578519 CCDC144BQ3MJ40 725 aa12.42□□□□□ -0.42
SKA2-204ENST00000578519 NIPA1Q7RTP0 329 aa12.42□□□□□ -0.42
SKA2-204ENST00000578519 TRMT44Q8IYL2 757 aaKnown RBP12.42□□□□□ -0.42
SKA2-204ENST00000578519 ZNF280CQ8ND82 737 aa12.42□□□□□ -0.42
SKA2-204ENST00000578519 RBM46Q8TBY0 533 aaKnown RBP12.42□□□□□ -0.42
SKA2-204ENST00000578519 CRYGNQ8WXF5 182 aa12.42□□□□□ -0.42
SKA2-204ENST00000578519 P2RX5Q93086 422 aa12.42□□□□□ -0.42
SKA2-204ENST00000578519 CCDC51Q96ER9 411 aa12.42□□□□□ -0.42
SKA2-204ENST00000578519 PRIMPOLQ96LW4 560 aa12.42□□□□□ -0.42
SKA2-204ENST00000578519 PNMA5Q96PV4 448 aa12.42□□□□□ -0.42
SKA2-204ENST00000578519 POLR3CQ9BUI4 534 aaPredicted RBP12.42□□□□□ -0.42
SKA2-204ENST00000578519 NAA15Q9BXJ9 866 aaKnown RBP12.42□□□□□ -0.42
SKA2-204ENST00000578519 TANGO6Q9C0B7 1094 aa12.42□□□□□ -0.42
SKA2-204ENST00000578519 HSD3B7Q9H2F3 369 aa12.42□□□□□ -0.42
SKA2-204ENST00000578519 TUFT1Q9NNX1 390 aa12.42□□□□□ -0.42
SKA2-204ENST00000578519 KCND1Q9NSA2 647 aa12.42□□□□□ -0.42
SKA2-204ENST00000578519 SAMSN1Q9NSI8 373 aaKnown RBP12.42□□□□□ -0.42
SKA2-204ENST00000578519 TCEAL9Q9UHQ7 104 aa12.42□□□□□ -0.42
SKA2-204ENST00000578519 GOLGA6L9A6NEM1 432 aa12.41□□□□□ -0.42
SKA2-204ENST00000578519 KCNJ18B7U540 433 aa12.41□□□□□ -0.42
SKA2-204ENST00000578519 N4BP3O15049 544 aa12.41□□□□□ -0.42
SKA2-204ENST00000578519 ZSCAN12O43309 604 aa12.41□□□□□ -0.42
SKA2-204ENST00000578519 FLOT1O75955 427 aa12.41□□□□□ -0.42
SKA2-204ENST00000578519 IDEP14735 1019 aa12.41□□□□□ -0.42
SKA2-204ENST00000578519 CD44P16070 742 aaKnown RBP12.41□□□□□ -0.42
SKA2-204ENST00000578519 OAZ1P54368 228 aa12.41□□□□□ -0.42
SKA2-204ENST00000578519 BACE1P56817 501 aa12.41□□□□□ -0.42
SKA2-204ENST00000578519 KCNJ12Q14500 433 aa12.41□□□□□ -0.42
SKA2-204ENST00000578519 NOL9Q5SY16 702 aaKnown RBP12.41□□□□□ -0.42
SKA2-204ENST00000578519 NBPF12Q5TAG4 269 aaPredicted RBP12.41□□□□□ -0.42
SKA2-204ENST00000578519 ANGEL2Q5VTE6 544 aaKnown RBP12.41□□□□□ -0.42
SKA2-204ENST00000578519 NCAPH2Q6IBW4 605 aa12.41□□□□□ -0.42
SKA2-204ENST00000578519 DPY19L2Q6NUT2 758 aa12.41□□□□□ -0.42
SKA2-204ENST00000578519 XRRA1Q6P2D8 792 aa12.41□□□□□ -0.42
SKA2-204ENST00000578519 GUF1Q8N442 669 aaKnown RBP12.41□□□□□ -0.42
SKA2-204ENST00000578519 ETNPPLQ8TBG4 499 aa12.41□□□□□ -0.42
SKA2-204ENST00000578519 NEK9Q8TD19 979 aa12.41□□□□□ -0.42
SKA2-204ENST00000578519 DCPSQ96C86 337 aaKnown RBP12.41□□□□□ -0.42
SKA2-204ENST00000578519 NAP1L5Q96NT1 182 aaPredicted RBP12.41□□□□□ -0.42
SKA2-204ENST00000578519 BLOC1S4Q9NUP1 217 aa12.41□□□□□ -0.42
SKA2-204ENST00000578519 PPP1R9AQ9ULJ8 1098 aa12.41□□□□□ -0.42
SKA2-204ENST00000578519 KIAA1024Q9UPX6 916 aa12.41□□□□□ -0.42
SKA2-204ENST00000578519 ITIH6Q6UXX5 1313 aa12.4□□□□□ -0.42
SKA2-204ENST00000578519 AKR1B15C9JRZ8 316 aaPredicted RBP12.4□□□□□ -0.42
Retrieved 100 of 20,778 RNA–protein pairs in 16.3 ms