RNA–Protein interactions for RNA: ENST00000568497.6

CLN3-235, Transcript of CLN3, battenin, humanhuman

TSL 3

Gene CLN3, Length 758 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLN3-235ENST00000568497 KCNB2Q92953 911 aa16.15■□□□□ 0.18
CLN3-235ENST00000568497 TRERF1Q96PN7 1200 aa16.15■□□□□ 0.18
CLN3-235ENST00000568497 SEZ6LQ9BYH1 1024 aa16.15■□□□□ 0.18
CLN3-235ENST00000568497 UPF3BQ9BZI7 483 aaKnown RBP16.15■□□□□ 0.18
CLN3-235ENST00000568497 TRPV6Q9H1D0 765 aa16.15■□□□□ 0.18
CLN3-235ENST00000568497 ABHD16BQ9H3Z7 469 aa16.15■□□□□ 0.18
CLN3-235ENST00000568497 JMJD4Q9H9V9 463 aa16.15■□□□□ 0.18
CLN3-235ENST00000568497 TRANK1O15050 2925 aa16.15■□□□□ 0.18
CLN3-235ENST00000568497 DNAJC25-GNG10A0A024R161 153 aa16.14■□□□□ 0.17
CLN3-235ENST00000568497 KLRF2D3W0D1 207 aa16.14■□□□□ 0.17
CLN3-235ENST00000568497 NFIBO00712 420 aa16.14■□□□□ 0.17
CLN3-235ENST00000568497 CTAGE5O15320 804 aa16.14■□□□□ 0.17
CLN3-235ENST00000568497 CYTH3O43739 400 aa16.14■□□□□ 0.17
CLN3-235ENST00000568497 B4GALT4O60513 344 aa16.14■□□□□ 0.17
CLN3-235ENST00000568497 PPP1R11O60927 126 aaPredicted RBP16.14■□□□□ 0.17
CLN3-235ENST00000568497 REC8O95072 547 aa16.14■□□□□ 0.17
CLN3-235ENST00000568497 ALADP13716 330 aa16.14■□□□□ 0.17
CLN3-235ENST00000568497 APOBRQ0VD83 1088 aa16.14■□□□□ 0.17
CLN3-235ENST00000568497 TROAPQ12815 778 aa16.14■□□□□ 0.17
CLN3-235ENST00000568497 ITGA7Q13683 1181 aa16.14■□□□□ 0.17
CLN3-235ENST00000568497 CDC37Q16543 378 aaPredicted RBP16.14■□□□□ 0.17
CLN3-235ENST00000568497 C8orf34Q49A92 452 aa16.14■□□□□ 0.17
CLN3-235ENST00000568497 MICU3Q86XE3 530 aa16.14■□□□□ 0.17
CLN3-235ENST00000568497 BRWD1Q9NSI6 2320 aa16.14■□□□□ 0.17
CLN3-235ENST00000568497 COL4A4P53420 1690 aaPredicted RBP16.14■□□□□ 0.17
CLN3-235ENST00000568497 PALM3A6NDB9 673 aaPredicted RBP16.13■□□□□ 0.17
CLN3-235ENST00000568497 CABYRO75952 493 aa16.13■□□□□ 0.17
CLN3-235ENST00000568497 ACTN1P12814 892 aa16.13■□□□□ 0.17
CLN3-235ENST00000568497 CASTP20810 708 aaKnown RBP16.13■□□□□ 0.17
CLN3-235ENST00000568497 TAP1Q03518 808 aa16.13■□□□□ 0.17
CLN3-235ENST00000568497 QRICH1Q2TAL8 776 aa16.13■□□□□ 0.17
CLN3-235ENST00000568497 CCDC178Q5BJE1 867 aa16.13■□□□□ 0.17
CLN3-235ENST00000568497 NSMFQ6X4W1 530 aa16.13■□□□□ 0.17
CLN3-235ENST00000568497 Q6ZUG5 572 aa16.13■□□□□ 0.17
CLN3-235ENST00000568497 DHX32Q7L7V1 743 aaKnown RBP16.13■□□□□ 0.17
CLN3-235ENST00000568497 CATIPQ7Z7H3 387 aa16.13■□□□□ 0.17
CLN3-235ENST00000568497 FGD4Q96M96 766 aa16.13■□□□□ 0.17
CLN3-235ENST00000568497 PIGSQ96S52 555 aa16.13■□□□□ 0.17
CLN3-235ENST00000568497 SLC9A7Q96T83 725 aa16.13■□□□□ 0.17
CLN3-235ENST00000568497 CCDC69A6NI79 296 aa16.12■□□□□ 0.17
CLN3-235ENST00000568497 KIF28PB7ZC32 967 aa16.12■□□□□ 0.17
CLN3-235ENST00000568497 PLA2G6O60733 806 aa16.12■□□□□ 0.17
CLN3-235ENST00000568497 PFKMP08237 780 aa16.12■□□□□ 0.17
CLN3-235ENST00000568497 SART3Q15020 963 aaKnown RBP16.12■□□□□ 0.17
CLN3-235ENST00000568497 ASPRV1Q53RT3 343 aa16.12■□□□□ 0.17
CLN3-235ENST00000568497 SLC30A10Q6XR72 485 aa16.12■□□□□ 0.17
CLN3-235ENST00000568497 ARMCX2Q7L311 632 aa16.12■□□□□ 0.17
CLN3-235ENST00000568497 FAM178BQ8IXR5 827 aa16.12■□□□□ 0.17
CLN3-235ENST00000568497 CLEC4DQ8WXI8 215 aa16.12■□□□□ 0.17
CLN3-235ENST00000568497 VWCEQ96DN2 955 aa16.12■□□□□ 0.17
CLN3-235ENST00000568497 A1CFQ9NQ94 594 aaKnown RBP16.12■□□□□ 0.17
CLN3-235ENST00000568497 ASTN1O14525 1302 aa16.12■□□□□ 0.17
CLN3-235ENST00000568497 KLF18A0A0U1RQI7 1052 aa16.11■□□□□ 0.17
CLN3-235ENST00000568497 ARHGEF15O94989 841 aa16.11■□□□□ 0.17
CLN3-235ENST00000568497 ICAM1P05362 532 aa16.11■□□□□ 0.17
CLN3-235ENST00000568497 RPS6KB1P23443 525 aa16.11■□□□□ 0.17
CLN3-235ENST00000568497 TSGA10IPQ3SY00 556 aa16.11■□□□□ 0.17
CLN3-235ENST00000568497 DHX30Q7L2E3 1194 aaKnown RBP eCLIP16.11■□□□□ 0.17
CLN3-235ENST00000568497 ANKRD35Q8N283 1001 aa16.11■□□□□ 0.17
CLN3-235ENST00000568497 SRBD1Q8N5C6 995 aaKnown RBP16.11■□□□□ 0.17
CLN3-235ENST00000568497 GDPD5Q8WTR4 605 aa16.11■□□□□ 0.17
CLN3-235ENST00000568497 KCNH6Q9H252 994 aa16.11■□□□□ 0.17
CLN3-235ENST00000568497 UBE2ZQ9H832 354 aaPredicted RBP16.11■□□□□ 0.17
CLN3-235ENST00000568497 LCTP09848 1927 aa16.11■□□□□ 0.17
CLN3-235ENST00000568497 MYH6P13533 1939 aa16.1■□□□□ 0.17
CLN3-235ENST00000568497 SOWAHBA6NEL2 793 aa16.1■□□□□ 0.17
CLN3-235ENST00000568497 ATP2A1O14983 1001 aa16.1■□□□□ 0.17
CLN3-235ENST00000568497 KCNA5P22460 613 aa16.1■□□□□ 0.17
CLN3-235ENST00000568497 CALML3P27482 149 aa16.1■□□□□ 0.17
CLN3-235ENST00000568497 PSMC6P62333 389 aa16.1■□□□□ 0.17
CLN3-235ENST00000568497 TNFAIP2Q03169 654 aa16.1■□□□□ 0.17
CLN3-235ENST00000568497 BAATQ14032 418 aaPredicted RBP16.1■□□□□ 0.17
CLN3-235ENST00000568497 FSCN1Q16658 493 aaKnown RBP16.1■□□□□ 0.17
CLN3-235ENST00000568497 GPATCH4Q5T3I0 446 aaKnown RBP16.1■□□□□ 0.17
CLN3-235ENST00000568497 BLOC1S2Q6QNY1 142 aa16.1■□□□□ 0.17
CLN3-235ENST00000568497 SPRED2Q7Z698 418 aa16.1■□□□□ 0.17
CLN3-235ENST00000568497 TLK2Q86UE8 772 aa16.1■□□□□ 0.17
CLN3-235ENST00000568497 BRF1Q92994 677 aa16.1■□□□□ 0.17
CLN3-235ENST00000568497 TMEM87BQ96K49 555 aa16.1■□□□□ 0.17
CLN3-235ENST00000568497 AP5M1Q9H0R1 490 aa16.1■□□□□ 0.17
CLN3-235ENST00000568497 ACAD9Q9H845 621 aa16.1■□□□□ 0.17
CLN3-235ENST00000568497 SCN5AQ14524 2016 aa16.09■□□□□ 0.17
CLN3-235ENST00000568497 C11orf97A0A1B0GVM6 126 aaPredicted RBP16.09■□□□□ 0.17
CLN3-235ENST00000568497 ZEB2O60315 1214 aa16.09■□□□□ 0.17
CLN3-235ENST00000568497 IL9P15248 144 aa16.09■□□□□ 0.17
CLN3-235ENST00000568497 FGD1P98174 961 aa16.09■□□□□ 0.17
CLN3-235ENST00000568497 TMEM63BQ5T3F8 832 aa16.09■□□□□ 0.17
CLN3-235ENST00000568497 EEPD1Q7L9B9 569 aa16.09■□□□□ 0.17
CLN3-235ENST00000568497 HERC6Q8IVU3 1022 aa16.09■□□□□ 0.17
CLN3-235ENST00000568497 ZFP91Q96JP5 570 aaPredicted RBP16.09■□□□□ 0.17
CLN3-235ENST00000568497 KATNBL1Q9H079 304 aa16.09■□□□□ 0.17
CLN3-235ENST00000568497 SLC12A7Q9Y666 1083 aa16.09■□□□□ 0.17
CLN3-235ENST00000568497 GRIN2DO15399 1336 aa16.09■□□□□ 0.17
CLN3-235ENST00000568497 PTPDC1A2A3K4 754 aa16.08■□□□□ 0.16
CLN3-235ENST00000568497 DCXO43602 365 aa16.08■□□□□ 0.16
CLN3-235ENST00000568497 LPXNO60711 386 aa16.08■□□□□ 0.16
CLN3-235ENST00000568497 CYP2C9P11712 490 aa16.08■□□□□ 0.16
CLN3-235ENST00000568497 CDC27P30260 824 aa16.08■□□□□ 0.16
CLN3-235ENST00000568497 OAZ1P54368 228 aa16.08■□□□□ 0.16
CLN3-235ENST00000568497 KRT32Q14532 448 aa16.08■□□□□ 0.16
Retrieved 100 of 20,778 RNA–protein pairs in 18.7 ms