RNA–Protein interactions for RNA: ENST00000566083.6

CLN3-222, Transcript of CLN3, battenin, humanhuman

TSL 2

Gene CLN3, Length 1,409 nt, Biotype retained intron, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLN3-222ENST00000566083 MMP3P08254 477 aa17.3■□□□□ 0.36
CLN3-222ENST00000566083 CYP2C9P11712 490 aa17.3■□□□□ 0.36
CLN3-222ENST00000566083 EIF2AK2P19525 551 aaKnown RBP17.3■□□□□ 0.36
CLN3-222ENST00000566083 ARHGAP1Q07960 439 aa17.3■□□□□ 0.36
CLN3-222ENST00000566083 LY6KQ17RY6 165 aa17.3■□□□□ 0.36
CLN3-222ENST00000566083 MAP3K14Q99558 947 aa17.3■□□□□ 0.36
CLN3-222ENST00000566083 CXXC1Q9P0U4 656 aaPredicted RBP17.3■□□□□ 0.36
CLN3-222ENST00000566083 PNMA6FA0A0J9YX94 578 aa17.29■□□□□ 0.36
CLN3-222ENST00000566083 ZBBXA8MT70 800 aa17.29■□□□□ 0.36
CLN3-222ENST00000566083 GRXCR1A8MXD5 290 aa17.29■□□□□ 0.36
CLN3-222ENST00000566083 GCOM1H8Y6P7 765 aaPredicted RBP17.29■□□□□ 0.36
CLN3-222ENST00000566083 POLR2MP0CAP2 368 aa17.29■□□□□ 0.36
CLN3-222ENST00000566083 PTH1RQ03431 593 aa17.29■□□□□ 0.36
CLN3-222ENST00000566083 TMTC2Q8N394 836 aa17.29■□□□□ 0.36
CLN3-222ENST00000566083 PPTC7Q8NI37 304 aa17.29■□□□□ 0.36
CLN3-222ENST00000566083 MAP4K1Q92918 833 aa17.29■□□□□ 0.36
CLN3-222ENST00000566083 SCLYQ96I15 445 aa17.29■□□□□ 0.36
CLN3-222ENST00000566083 PDCD2LQ9BRP1 358 aa17.29■□□□□ 0.36
CLN3-222ENST00000566083 PCDHA11Q9Y5I1 949 aa17.29■□□□□ 0.36
CLN3-222ENST00000566083 ATP2A2P16615 1042 aaKnown RBP17.28■□□□□ 0.36
CLN3-222ENST00000566083 KIF5BP33176 963 aa17.28■□□□□ 0.36
CLN3-222ENST00000566083 PBX2P40425 430 aa17.28■□□□□ 0.36
CLN3-222ENST00000566083 TROAPQ12815 778 aa17.28■□□□□ 0.36
CLN3-222ENST00000566083 PTGISQ16647 500 aa17.28■□□□□ 0.36
CLN3-222ENST00000566083 TMEM67Q5HYA8 995 aa17.28■□□□□ 0.36
CLN3-222ENST00000566083 VSIG10LQ86VR7 867 aa17.28■□□□□ 0.36
CLN3-222ENST00000566083 HOMER1Q86YM7 354 aa17.28■□□□□ 0.36
CLN3-222ENST00000566083 DHX37Q8IY37 1157 aaKnown RBP17.28■□□□□ 0.36
CLN3-222ENST00000566083 PHOSPHO2Q8TCD6 241 aa17.28■□□□□ 0.36
CLN3-222ENST00000566083 SYMPKQ92797 1274 aaKnown RBP17.28■□□□□ 0.36
CLN3-222ENST00000566083 KIAA1217Q5T5P2 1943 aa17.27■□□□□ 0.36
CLN3-222ENST00000566083 TTC28Q96AY4 2481 aa17.27■□□□□ 0.36
CLN3-222ENST00000566083 PPFIA4O75335 1185 aa17.27■□□□□ 0.35
CLN3-222ENST00000566083 STAM2O75886 525 aa17.27■□□□□ 0.35
CLN3-222ENST00000566083 IQCF3P0C7M6 154 aa17.27■□□□□ 0.35
CLN3-222ENST00000566083 SMARCA1P28370 1054 aa17.27■□□□□ 0.35
CLN3-222ENST00000566083 CHST3Q7LGC8 479 aa17.27■□□□□ 0.35
CLN3-222ENST00000566083 C7orf31Q8N865 590 aa17.27■□□□□ 0.35
CLN3-222ENST00000566083 AFAP1L1Q8TED9 768 aa17.27■□□□□ 0.35
CLN3-222ENST00000566083 SLC9A7Q96T83 725 aa17.27■□□□□ 0.35
CLN3-222ENST00000566083 LZTS2Q9BRK4 669 aa17.27■□□□□ 0.35
CLN3-222ENST00000566083 BAZ2BQ9UIF8 2168 aaKnown RBP17.27■□□□□ 0.35
CLN3-222ENST00000566083 OPLAHO14841 1288 aa17.26■□□□□ 0.35
CLN3-222ENST00000566083 BAIAP3O94812 1187 aa17.26■□□□□ 0.35
CLN3-222ENST00000566083 MYCLP12524 364 aaPredicted RBP17.26■□□□□ 0.35
CLN3-222ENST00000566083 CCND2P30279 289 aa17.26■□□□□ 0.35
CLN3-222ENST00000566083 GNAQP50148 359 aa17.26■□□□□ 0.35
CLN3-222ENST00000566083 CHMP4BP1P59074 171 aa17.26■□□□□ 0.35
CLN3-222ENST00000566083 PGM5Q15124 567 aa17.26■□□□□ 0.35
CLN3-222ENST00000566083 CASC1Q6TDU7 716 aa17.26■□□□□ 0.35
CLN3-222ENST00000566083 DEFB128Q7Z7B8 93 aa17.26■□□□□ 0.35
CLN3-222ENST00000566083 CTCFLQ8NI51 663 aaPredicted RBP17.26■□□□□ 0.35
CLN3-222ENST00000566083 PIGSQ96S52 555 aa17.26■□□□□ 0.35
CLN3-222ENST00000566083 COL25A1Q9BXS0 654 aaPredicted RBP17.26■□□□□ 0.35
CLN3-222ENST00000566083 KIF28PB7ZC32 967 aa17.25■□□□□ 0.35
CLN3-222ENST00000566083 PPP1R11O60927 126 aaPredicted RBP17.25■□□□□ 0.35
CLN3-222ENST00000566083 DDAH1O94760 285 aa17.25■□□□□ 0.35
CLN3-222ENST00000566083 HOXD8P13378 290 aaPredicted RBP17.25■□□□□ 0.35
CLN3-222ENST00000566083 RBL2Q08999 1139 aa17.25■□□□□ 0.35
CLN3-222ENST00000566083 GNPTABQ3T906 1256 aa17.25■□□□□ 0.35
CLN3-222ENST00000566083 IGDCC4Q8TDY8 1250 aa17.25■□□□□ 0.35
CLN3-222ENST00000566083 FTOQ9C0B1 505 aaKnown RBP eCLIP17.25■□□□□ 0.35
CLN3-222ENST00000566083 NKX2-4Q9H2Z4 354 aa17.25■□□□□ 0.35
CLN3-222ENST00000566083 GTF2IRD1Q9UHL9 959 aa17.25■□□□□ 0.35
CLN3-222ENST00000566083 F2P00734 622 aa17.24■□□□□ 0.35
CLN3-222ENST00000566083 HOXA13P31271 388 aaPredicted RBP17.24■□□□□ 0.35
CLN3-222ENST00000566083 MCM5P33992 734 aa17.24■□□□□ 0.35
CLN3-222ENST00000566083 CELF3Q5SZQ8 465 aaKnown RBP17.24■□□□□ 0.35
CLN3-222ENST00000566083 MYSM1Q5VVJ2 828 aa17.24■□□□□ 0.35
CLN3-222ENST00000566083 PPP2R2DQ66LE6 453 aa17.24■□□□□ 0.35
CLN3-222ENST00000566083 MB21D2Q8IYB1 491 aaPredicted RBP17.24■□□□□ 0.35
CLN3-222ENST00000566083 KAT2BQ92831 832 aa17.24■□□□□ 0.35
CLN3-222ENST00000566083 RRP36Q96EU6 259 aaKnown RBP17.24■□□□□ 0.35
CLN3-222ENST00000566083 TMEM87BQ96K49 555 aa17.24■□□□□ 0.35
CLN3-222ENST00000566083 SPZ1Q9BXG8 430 aa17.24■□□□□ 0.35
CLN3-222ENST00000566083 PRDM12Q9H4Q4 367 aa17.24■□□□□ 0.35
CLN3-222ENST00000566083 SEC63Q9UGP8 760 aaKnown RBP17.24■□□□□ 0.35
CLN3-222ENST00000566083 RBM8AQ9Y5S9 174 aaKnown RBP17.24■□□□□ 0.35
CLN3-222ENST00000566083 CYTH3O43739 400 aa17.23■□□□□ 0.35
CLN3-222ENST00000566083 CALM1P0DP23 149 aa17.23■□□□□ 0.35
CLN3-222ENST00000566083 CALM2P0DP24 149 aa17.23■□□□□ 0.35
CLN3-222ENST00000566083 CALM3P0DP25 149 aa17.23■□□□□ 0.35
CLN3-222ENST00000566083 SELPP16109 830 aa17.23■□□□□ 0.35
CLN3-222ENST00000566083 PSEN2P49810 448 aa17.23■□□□□ 0.35
CLN3-222ENST00000566083 MFSD10Q14728 455 aa17.23■□□□□ 0.35
CLN3-222ENST00000566083 XRRA1Q6P2D8 792 aa17.23■□□□□ 0.35
CLN3-222ENST00000566083 FCHSD1Q86WN1 690 aa17.23■□□□□ 0.35
CLN3-222ENST00000566083 CUL5Q93034 780 aa17.23■□□□□ 0.35
CLN3-222ENST00000566083 VWCEQ96DN2 955 aa17.23■□□□□ 0.35
CLN3-222ENST00000566083 SPATA33Q96N06 139 aa17.23■□□□□ 0.35
CLN3-222ENST00000566083 MLXIPQ9HAP2 919 aa17.23■□□□□ 0.35
CLN3-222ENST00000566083 YBX2Q9Y2T7 364 aaKnown RBP17.23■□□□□ 0.35
CLN3-222ENST00000566083 HAS3O00219 553 aa17.22■□□□□ 0.35
CLN3-222ENST00000566083 EFCAB14O75071 495 aa17.22■□□□□ 0.35
CLN3-222ENST00000566083 RGS20O76081 388 aa17.22■□□□□ 0.35
CLN3-222ENST00000566083 KCNJ6P48051 423 aa17.22■□□□□ 0.35
CLN3-222ENST00000566083 PTK7Q13308 1070 aa17.22■□□□□ 0.35
CLN3-222ENST00000566083 NEDD9Q14511 834 aa17.22■□□□□ 0.35
CLN3-222ENST00000566083 KIAA0753Q2KHM9 967 aa17.22■□□□□ 0.35
CLN3-222ENST00000566083 GDF6Q6KF10 455 aaPredicted RBP17.22■□□□□ 0.35
Retrieved 100 of 20,778 RNA–protein pairs in 28.6 ms