RNA–Protein interactions for RNA: ENST00000563783.5

SPG7-208, Transcript of SPG7, paraplegin matrix AAA peptidase subunit, human

TSL 3

Gene SPG7, Length 573 nt, Biotype processed transcript, Subcellular localisation Cytoplasm, Endoplasmic reticulum, Nucleus .

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RNA		Protein				Prediction (catRAPID)		Interaction (ENCODE eCLIP)
Transcript Symbol	Ensembl Transcript ID	Gene	UniProt Accession	Length	Protein Status	Prediction Score	Prediction z-Score	p-Value	Fold Change
SPG7-208	ENST00000563783	MMP3	P08254	477 aa		29.16	■■■□□ 2.26
SPG7-208	ENST00000563783	TGFB3	P10600	412 aa		29.16	■■■□□ 2.26
SPG7-208	ENST00000563783	DNAJB2	P25686	324 aa		29.16	■■■□□ 2.26
SPG7-208	ENST00000563783	VSIG10L	Q86VR7	867 aa		29.16	■■■□□ 2.26
SPG7-208	ENST00000563783	CDX2	Q99626	313 aa	Predicted RBP	29.16	■■■□□ 2.26
SPG7-208	ENST00000563783	GCOM1	H8Y6P7	765 aa	Predicted RBP	29.15	■■■□□ 2.26
SPG7-208	ENST00000563783	FGB	P02675	491 aa		29.15	■■■□□ 2.26
SPG7-208	ENST00000563783	POLR2M	P0CAP2	368 aa		29.15	■■■□□ 2.26
SPG7-208	ENST00000563783	LIFR	P42702	1097 aa		29.15	■■■□□ 2.26
SPG7-208	ENST00000563783	GNAQ	P50148	359 aa		29.15	■■■□□ 2.26
SPG7-208	ENST00000563783	LAMC2	Q13753	1193 aa		29.15	■■■□□ 2.26
SPG7-208	ENST00000563783	NECTIN1	Q15223	517 aa		29.15	■■■□□ 2.26
SPG7-208	ENST00000563783	HOMER1	Q86YM7	354 aa		29.15	■■■□□ 2.26
SPG7-208	ENST00000563783	ZNF654	Q8IZM8	581 aa		29.15	■■■□□ 2.26
SPG7-208	ENST00000563783	CTCFL	Q8NI51	663 aa	Predicted RBP	29.15	■■■□□ 2.26
SPG7-208	ENST00000563783	TRMT13	Q9NUP7	481 aa	Known RBP	29.15	■■■□□ 2.26
SPG7-208	ENST00000563783	UMODL1	Q5DID0	1318 aa		29.15	■■■□□ 2.26
SPG7-208	ENST00000563783	HOXD8	P13378	290 aa	Predicted RBP	29.14	■■■□□ 2.26
SPG7-208	ENST00000563783	CAST	P20810	708 aa	Known RBP	29.14	■■■□□ 2.26
SPG7-208	ENST00000563783	RFC2	P35250	354 aa		29.14	■■■□□ 2.26
SPG7-208	ENST00000563783	DGKD	Q16760	1214 aa		29.14	■■■□□ 2.26
SPG7-208	ENST00000563783	LY6K	Q17RY6	165 aa		29.14	■■■□□ 2.26
SPG7-208	ENST00000563783	CHST3	Q7LGC8	479 aa		29.14	■■■□□ 2.26
SPG7-208	ENST00000563783	PPTC7	Q8NI37	304 aa		29.14	■■■□□ 2.26
SPG7-208	ENST00000563783	AFG1L	Q8WV93	481 aa		29.14	■■■□□ 2.26
SPG7-208	ENST00000563783	MRVI1	Q9Y6F6	885 aa		29.14	■■■□□ 2.26
SPG7-208	ENST00000563783	FRMPD4	Q14CM0	1322 aa		29.14	■■■□□ 2.25
SPG7-208	ENST00000563783	TRIP12	Q14669	1992 aa	Predicted RBP	29.13	■■■□□ 2.25
SPG7-208	ENST00000563783	SLC27A2	O14975	620 aa		29.13	■■■□□ 2.25
SPG7-208	ENST00000563783	PRC1	O43663	620 aa		29.13	■■■□□ 2.25
SPG7-208	ENST00000563783	STAM2	O75886	525 aa		29.13	■■■□□ 2.25
SPG7-208	ENST00000563783	PGM5	Q15124	567 aa		29.13	■■■□□ 2.25
SPG7-208	ENST00000563783	FAM161B	Q96MY7	647 aa		29.13	■■■□□ 2.25
SPG7-208	ENST00000563783	GBF1	Q92538	1859 aa		29.12	■■■□□ 2.25
SPG7-208	ENST00000563783	CALM1	P0DP23	149 aa		29.12	■■■□□ 2.25
SPG7-208	ENST00000563783	CALM2	P0DP24	149 aa		29.12	■■■□□ 2.25
SPG7-208	ENST00000563783	CALM3	P0DP25	149 aa		29.12	■■■□□ 2.25
SPG7-208	ENST00000563783	ACR	P10323	421 aa		29.12	■■■□□ 2.25
SPG7-208	ENST00000563783	KATNAL1	Q9BW62	490 aa		29.12	■■■□□ 2.25
SPG7-208	ENST00000563783	CHD9	Q3L8U1	2897 aa		29.11	■■■□□ 2.25
SPG7-208	ENST00000563783	SCN5A	Q14524	2016 aa		29.11	■■■□□ 2.25
SPG7-208	ENST00000563783	SH2B2	O14492	632 aa	Predicted RBP	29.11	■■■□□ 2.25
SPG7-208	ENST00000563783	CCND2	P30279	289 aa		29.11	■■■□□ 2.25
SPG7-208	ENST00000563783	CCL23	P55773	120 aa		29.11	■■■□□ 2.25
SPG7-208	ENST00000563783	BFSP2	Q13515	415 aa		29.11	■■■□□ 2.25
SPG7-208	ENST00000563783	RAB30	Q15771	203 aa		29.11	■■■□□ 2.25
SPG7-208	ENST00000563783	FAM47C	Q5HY64	1035 aa		29.11	■■■□□ 2.25
SPG7-208	ENST00000563783	RNF20	Q5VTR2	975 aa		29.11	■■■□□ 2.25
SPG7-208	ENST00000563783	CREB3L3	Q68CJ9	461 aa		29.11	■■■□□ 2.25
SPG7-208	ENST00000563783	RRP36	Q96EU6	259 aa	Known RBP	29.11	■■■□□ 2.25
SPG7-208	ENST00000563783	RGS20	O76081	388 aa		29.1	■■■□□ 2.25
SPG7-208	ENST00000563783	HOXA13	P31271	388 aa	Predicted RBP	29.1	■■■□□ 2.25
SPG7-208	ENST00000563783	KAT2B	Q92831	832 aa		29.1	■■■□□ 2.25
SPG7-208	ENST00000563783	TIFA	Q96CG3	184 aa		29.1	■■■□□ 2.25
SPG7-208	ENST00000563783	PIK3CD	O00329	1044 aa		29.09	■■■□□ 2.25
SPG7-208	ENST00000563783	PPFIA4	O75335	1185 aa		29.09	■■■□□ 2.25
SPG7-208	ENST00000563783	CYP2C9	P11712	490 aa		29.09	■■■□□ 2.25
SPG7-208	ENST00000563783	SGMS1	Q86VZ5	419 aa		29.09	■■■□□ 2.25
SPG7-208	ENST00000563783	DHX37	Q8IY37	1157 aa	Known RBP	29.09	■■■□□ 2.25
SPG7-208	ENST00000563783	CCDC155	Q8N6L0	562 aa		29.09	■■■□□ 2.25
SPG7-208	ENST00000563783	CAGE1	Q8TC20	777 aa		29.09	■■■□□ 2.25
SPG7-208	ENST00000563783	ANO2	Q9NQ90	1003 aa		29.09	■■■□□ 2.25
SPG7-208	ENST00000563783	CCDC69	A6NI79	296 aa		29.08	■■■□□ 2.25
SPG7-208	ENST00000563783	F2	P00734	622 aa		29.08	■■■□□ 2.25
SPG7-208	ENST00000563783	RBL2	Q08999	1139 aa		29.08	■■■□□ 2.25
SPG7-208	ENST00000563783	MYSM1	Q5VVJ2	828 aa		29.08	■■■□□ 2.25
SPG7-208	ENST00000563783	XRRA1	Q6P2D8	792 aa		29.08	■■■□□ 2.25
SPG7-208	ENST00000563783	VWCE	Q96DN2	955 aa		29.08	■■■□□ 2.25
SPG7-208	ENST00000563783	PBX4	Q9BYU1	374 aa		29.08	■■■□□ 2.25
SPG7-208	ENST00000563783	ZNF576	Q9H609	170 aa		29.08	■■■□□ 2.25
SPG7-208	ENST00000563783	SEC63	Q9UGP8	760 aa	Known RBP	29.08	■■■□□ 2.25
SPG7-208	ENST00000563783	PARN	O95453	639 aa	Known RBP	29.07	■■■□□ 2.24
SPG7-208	ENST00000563783	MYCL	P12524	364 aa	Predicted RBP	29.07	■■■□□ 2.24
SPG7-208	ENST00000563783	GNPTAB	Q3T906	1256 aa		29.07	■■■□□ 2.24
SPG7-208	ENST00000563783	CELF3	Q5SZQ8	465 aa	Known RBP	29.07	■■■□□ 2.24
SPG7-208	ENST00000563783	TEX2	Q8IWB9	1127 aa		29.07	■■■□□ 2.24
SPG7-208	ENST00000563783	RETREG2	Q8NC44	543 aa		29.07	■■■□□ 2.24
SPG7-208	ENST00000563783	CXXC1	Q9P0U4	656 aa	Predicted RBP	29.07	■■■□□ 2.24
SPG7-208	ENST00000563783	NOD1	Q9Y239	953 aa		29.07	■■■□□ 2.24
SPG7-208	ENST00000563783	CDH23	Q9H251	3354 aa		29.07	■■■□□ 2.24
SPG7-208	ENST00000563783	TET1	Q8NFU7	2136 aa		29.06	■■■□□ 2.24
SPG7-208	ENST00000563783	HAS3	O00219	553 aa		29.06	■■■□□ 2.24
SPG7-208	ENST00000563783	ICAM3	P32942	547 aa		29.06	■■■□□ 2.24
SPG7-208	ENST00000563783	TSGA10IP	Q3SY00	556 aa		29.06	■■■□□ 2.24
SPG7-208	ENST00000563783	NFXL1	Q6ZNB6	911 aa		29.06	■■■□□ 2.24
SPG7-208	ENST00000563783	IL31RA	Q8NI17	732 aa		29.06	■■■□□ 2.24
SPG7-208	ENST00000563783	AFAP1L1	Q8TED9	768 aa		29.06	■■■□□ 2.24
SPG7-208	ENST00000563783	INPP4A	Q96PE3	977 aa	Predicted RBP	29.06	■■■□□ 2.24
SPG7-208	ENST00000563783	GTF2IRD1	Q9UHL9	959 aa		29.06	■■■□□ 2.24
SPG7-208	ENST00000563783	MSRA	Q9UJ68	235 aa		29.06	■■■□□ 2.24
SPG7-208	ENST00000563783	PTGIS	Q16647	500 aa		29.05	■■■□□ 2.24
SPG7-208	ENST00000563783	FCHSD1	Q86WN1	690 aa		29.05	■■■□□ 2.24
SPG7-208	ENST00000563783	CUL5	Q93034	780 aa		29.05	■■■□□ 2.24
SPG7-208	ENST00000563783	SCLY	Q96I15	445 aa		29.05	■■■□□ 2.24
SPG7-208	ENST00000563783	SLC4A7	Q9Y6M7	1214 aa		29.05	■■■□□ 2.24
SPG7-208	ENST00000563783	IQCF3	P0C7M6	154 aa		29.04	■■■□□ 2.24
SPG7-208	ENST00000563783	ACTN1	P12814	892 aa		29.04	■■■□□ 2.24
SPG7-208	ENST00000563783	UBA1	P22314	1058 aa	Known RBP	29.04	■■■□□ 2.24
SPG7-208	ENST00000563783	OTOP2	Q7RTS6	562 aa		29.04	■■■□□ 2.24
SPG7-208	ENST00000563783	MAFA	Q8NHW3	353 aa	Predicted RBP	29.04	■■■□□ 2.24

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