RNA–Protein interactions for RNA: ENST00000563739.5

SF3B3-204, Transcript of splicing factor 3b subunit 3, humanhuman

TSL 2

Gene SF3B3, Length 1,105 nt, Biotype retained intron, Subcellular localisation Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SF3B3-204ENST00000563739 SALL3Q9BXA9 1300 aa12.28□□□□□ -0.44
SF3B3-204ENST00000563739 DOCK5Q9H7D0 1870 aa12.27□□□□□ -0.44
SF3B3-204ENST00000563739 HAS3O00219 553 aa12.27□□□□□ -0.45
SF3B3-204ENST00000563739 NKRFO15226 690 aaKnown RBP eCLIP12.27□□□□□ -0.45
SF3B3-204ENST00000563739 CALML3P27482 149 aa12.27□□□□□ -0.45
SF3B3-204ENST00000563739 BFSP2Q13515 415 aa12.27□□□□□ -0.45
SF3B3-204ENST00000563739 PTCRAQ6ISU1 281 aaPredicted RBP12.27□□□□□ -0.45
SF3B3-204ENST00000563739 CAGE1Q8TC20 777 aa12.27□□□□□ -0.45
SF3B3-204ENST00000563739 SCFD2Q8WU76 684 aa12.27□□□□□ -0.45
SF3B3-204ENST00000563739 DCAF4Q8WV16 495 aa12.27□□□□□ -0.45
SF3B3-204ENST00000563739 AFG1LQ8WV93 481 aa12.27□□□□□ -0.45
SF3B3-204ENST00000563739 TBC1D5Q92609 795 aa12.27□□□□□ -0.45
SF3B3-204ENST00000563739 RAD9AQ99638 391 aa12.27□□□□□ -0.45
SF3B3-204ENST00000563739 GTF2IRD1Q9UHL9 959 aa12.27□□□□□ -0.45
SF3B3-204ENST00000563739 ANAPC4Q9UJX5 808 aa12.27□□□□□ -0.45
SF3B3-204ENST00000563739 ISY1Q9ULR0 285 aaKnown RBP12.27□□□□□ -0.45
SF3B3-204ENST00000563739 DDX19BQ9UMR2 479 aa12.27□□□□□ -0.45
SF3B3-204ENST00000563739 MTMR7Q9Y216 660 aa12.27□□□□□ -0.45
SF3B3-204ENST00000563739 PLXNA3P51805 1871 aa12.26□□□□□ -0.45
SF3B3-204ENST00000563739 PTPDC1A2A3K4 754 aa12.26□□□□□ -0.45
SF3B3-204ENST00000563739 KIF28PB7ZC32 967 aa12.26□□□□□ -0.45
SF3B3-204ENST00000563739 H3BQ06 376 aaPredicted RBP12.26□□□□□ -0.45
SF3B3-204ENST00000563739 ORC4O43929 436 aa12.26□□□□□ -0.45
SF3B3-204ENST00000563739 ZFYP08048 801 aaPredicted RBP12.26□□□□□ -0.45
SF3B3-204ENST00000563739 SNHG28P0DPA3 235 aa12.26□□□□□ -0.45
SF3B3-204ENST00000563739 TXNP10599 105 aaKnown RBP12.26□□□□□ -0.45
SF3B3-204ENST00000563739 PDHBP11177 359 aa12.26□□□□□ -0.45
SF3B3-204ENST00000563739 LTBRP36941 435 aa12.26□□□□□ -0.45
SF3B3-204ENST00000563739 KCNJ6P48051 423 aa12.26□□□□□ -0.45
SF3B3-204ENST00000563739 ZNF200P98182 395 aaPredicted RBP12.26□□□□□ -0.45
SF3B3-204ENST00000563739 PDE4BQ07343 736 aa12.26□□□□□ -0.45
SF3B3-204ENST00000563739 RETREG2Q8NC44 543 aa12.26□□□□□ -0.45
SF3B3-204ENST00000563739 TMEM47Q9BQJ4 181 aa12.26□□□□□ -0.45
SF3B3-204ENST00000563739 CPVLQ9H3G5 476 aa12.26□□□□□ -0.45
SF3B3-204ENST00000563739 HDAC6Q9UBN7 1215 aa12.26□□□□□ -0.45
SF3B3-204ENST00000563739 ADD3Q9UEY8 706 aaKnown RBP12.26□□□□□ -0.45
SF3B3-204ENST00000563739 WDR19Q8NEZ3 1342 aa12.26□□□□□ -0.45
SF3B3-204ENST00000563739 CACNA1GO43497 2377 aa12.26□□□□□ -0.45
SF3B3-204ENST00000563739 HOXD8P13378 290 aaPredicted RBP12.25□□□□□ -0.45
SF3B3-204ENST00000563739 HNRNPUQ00839 825 aaKnown RBP eCLIP12.25□□□□□ -0.45
SF3B3-204ENST00000563739 LY6KQ17RY6 165 aa12.25□□□□□ -0.45
SF3B3-204ENST00000563739 CCDC96Q2M329 555 aa12.25□□□□□ -0.45
SF3B3-204ENST00000563739 ZNF618Q5T7W0 954 aa12.25□□□□□ -0.45
SF3B3-204ENST00000563739 FAM117BQ6P1L5 589 aa12.25□□□□□ -0.45
SF3B3-204ENST00000563739 RNF207Q6ZRF8 634 aa12.25□□□□□ -0.45
SF3B3-204ENST00000563739 HFE2Q6ZVN8 426 aa12.25□□□□□ -0.45
SF3B3-204ENST00000563739 NAPBQ9H115 298 aa12.25□□□□□ -0.45
SF3B3-204ENST00000563739 ZNF287Q9HBT7 754 aa12.25□□□□□ -0.45
SF3B3-204ENST00000563739 CACNA1HO95180 2353 aa12.25□□□□□ -0.45
SF3B3-204ENST00000563739 ABHD14A-ACY1A0A1B0GW23 586 aa12.24□□□□□ -0.45
SF3B3-204ENST00000563739 TSPY2A6NKD2 308 aa12.24□□□□□ -0.45
SF3B3-204ENST00000563739 DCXO43602 365 aa12.24□□□□□ -0.45
SF3B3-204ENST00000563739 KPNA6O60684 536 aa12.24□□□□□ -0.45
SF3B3-204ENST00000563739 RGS20O76081 388 aa12.24□□□□□ -0.45
SF3B3-204ENST00000563739 F2P00734 622 aa12.24□□□□□ -0.45
SF3B3-204ENST00000563739 APPP05067 770 aa12.24□□□□□ -0.45
SF3B3-204ENST00000563739 HOXC8P31273 242 aa12.24□□□□□ -0.45
SF3B3-204ENST00000563739 PDE4DQ08499 809 aa12.24□□□□□ -0.45
SF3B3-204ENST00000563739 ZNF543Q08ER8 600 aa12.24□□□□□ -0.45
SF3B3-204ENST00000563739 TCEAL5Q5H9L2 206 aa12.24□□□□□ -0.45
SF3B3-204ENST00000563739 PRSS33Q8NF86 280 aa12.24□□□□□ -0.45
SF3B3-204ENST00000563739 DNERQ8NFT8 737 aa12.24□□□□□ -0.45
SF3B3-204ENST00000563739 MRPL38Q96DV4 380 aaKnown RBP12.24□□□□□ -0.45
SF3B3-204ENST00000563739 ZDBF2Q9HCK1 2354 aa12.24□□□□□ -0.45
SF3B3-204ENST00000563739 GPCPD1Q9NPB8 672 aa12.24□□□□□ -0.45
SF3B3-204ENST00000563739 DCHS1Q96JQ0 3298 aa12.23□□□□□ -0.45
SF3B3-204ENST00000563739 RAD50Q92878 1312 aa12.23□□□□□ -0.45
SF3B3-204ENST00000563739 LOC101059915A0A1B0GWI6 518 aaPredicted RBP12.23□□□□□ -0.45
SF3B3-204ENST00000563739 OPLAHO14841 1288 aa12.23□□□□□ -0.45
SF3B3-204ENST00000563739 ZNF286BP0CG31 522 aa12.23□□□□□ -0.45
SF3B3-204ENST00000563739 IRS1P35568 1242 aa12.23□□□□□ -0.45
SF3B3-204ENST00000563739 PSEN2P49810 448 aa12.23□□□□□ -0.45
SF3B3-204ENST00000563739 DLX2Q07687 328 aaPredicted RBP12.23□□□□□ -0.45
SF3B3-204ENST00000563739 FBXO22Q8NEZ5 403 aa12.23□□□□□ -0.45
SF3B3-204ENST00000563739 SYTL5Q8TDW5 730 aaPredicted RBP12.23□□□□□ -0.45
SF3B3-204ENST00000563739 TAAR1Q96RJ0 339 aa12.23□□□□□ -0.45
SF3B3-204ENST00000563739 DCTPP1Q9H773 170 aa12.23□□□□□ -0.45
SF3B3-204ENST00000563739 RC3H2Q9HBD1 1191 aaKnown RBP12.23□□□□□ -0.45
SF3B3-204ENST00000563739 GPHNQ9NQX3 736 aaPredicted RBP12.23□□□□□ -0.45
SF3B3-204ENST00000563739 CHMP4BP1P59074 171 aa12.22□□□□□ -0.45
SF3B3-204ENST00000563739 PTK7Q13308 1070 aa12.22□□□□□ -0.45
SF3B3-204ENST00000563739 CTC1Q2NKJ3 1217 aa12.22□□□□□ -0.45
SF3B3-204ENST00000563739 EPC2Q52LR7 807 aa12.22□□□□□ -0.45
SF3B3-204ENST00000563739 CCDC155Q8N6L0 562 aa12.22□□□□□ -0.45
SF3B3-204ENST00000563739 DBF4BQ8NFT6 615 aa12.22□□□□□ -0.45
SF3B3-204ENST00000563739 EMID1Q96A84 441 aaPredicted RBP12.22□□□□□ -0.45
SF3B3-204ENST00000563739 PABPC5Q96DU9 382 aaKnown RBP12.22□□□□□ -0.45
SF3B3-204ENST00000563739 ZBED2Q9BTP6 218 aa12.22□□□□□ -0.45
SF3B3-204ENST00000563739 DDX41Q9UJV9 622 aaKnown RBP12.22□□□□□ -0.45
SF3B3-204ENST00000563739 NOD1Q9Y239 953 aa12.22□□□□□ -0.45
SF3B3-204ENST00000563739 SPTBN4Q9H254 2564 aa12.21□□□□□ -0.45
SF3B3-204ENST00000563739 H3BNC9 293 aa12.21□□□□□ -0.45
SF3B3-204ENST00000563739 RANBP6O60518 1105 aaKnown RBP12.21□□□□□ -0.45
SF3B3-204ENST00000563739 GH1P01241 217 aa12.21□□□□□ -0.45
SF3B3-204ENST00000563739 TOP1P11387 765 aaKnown RBP12.21□□□□□ -0.45
SF3B3-204ENST00000563739 ALADP13716 330 aa12.21□□□□□ -0.45
SF3B3-204ENST00000563739 SSTR3P32745 418 aaPredicted RBP12.21□□□□□ -0.45
SF3B3-204ENST00000563739 MFSD10Q14728 455 aa12.21□□□□□ -0.45
SF3B3-204ENST00000563739 PLEKHG4Q58EX7 1191 aa12.21□□□□□ -0.45
SF3B3-204ENST00000563739 SERINC5Q86VE9 423 aa12.21□□□□□ -0.45
Retrieved 100 of 20,778 RNA–protein pairs in 78.3 ms