RNA–Protein interactions for RNA: ENST00000560445.1

TPM1-223, Transcript of tropomyosin 1, humanhuman

TSL 3 BASIC

Gene TPM1, Length 485 nt, Biotype protein coding, Subcellular localisation Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
TPM1-223ENST00000560445 TMEM240Q5SV17 173 aa16.28■□□□□ 0.2
TPM1-223ENST00000560445 TEX2Q8IWB9 1127 aa16.28■□□□□ 0.2
TPM1-223ENST00000560445 DHX37Q8IY37 1157 aaKnown RBP16.28■□□□□ 0.2
TPM1-223ENST00000560445 ZNF654Q8IZM8 581 aa16.28■□□□□ 0.2
TPM1-223ENST00000560445 PPTC7Q8NI37 304 aa16.28■□□□□ 0.2
TPM1-223ENST00000560445 IGDCC4Q8TDY8 1250 aa16.28■□□□□ 0.2
TPM1-223ENST00000560445 HERVK_113Q902F9 699 aa16.28■□□□□ 0.2
TPM1-223ENST00000560445 PIGSQ96S52 555 aa16.28■□□□□ 0.2
TPM1-223ENST00000560445 PDCD2LQ9BRP1 358 aa16.28■□□□□ 0.2
TPM1-223ENST00000560445 TRPV6Q9H1D0 765 aa16.28■□□□□ 0.2
TPM1-223ENST00000560445 GRIN2DO15399 1336 aa16.27■□□□□ 0.2
TPM1-223ENST00000560445 DNAJB2P25686 324 aa16.27■□□□□ 0.2
TPM1-223ENST00000560445 LIFRP42702 1097 aa16.27■□□□□ 0.2
TPM1-223ENST00000560445 ARHGAP1Q07960 439 aa16.27■□□□□ 0.2
TPM1-223ENST00000560445 KRT32Q14532 448 aa16.27■□□□□ 0.2
TPM1-223ENST00000560445 NBPF20Q3BBV1 942 aa16.27■□□□□ 0.2
TPM1-223ENST00000560445 XRRA1Q6P2D8 792 aa16.27■□□□□ 0.2
TPM1-223ENST00000560445 SESTD1Q86VW0 696 aa16.27■□□□□ 0.2
TPM1-223ENST00000560445 CAGE1Q8TC20 777 aa16.27■□□□□ 0.2
TPM1-223ENST00000560445 LSG1Q9H089 658 aaKnown RBP16.27■□□□□ 0.2
TPM1-223ENST00000560445 SEMA6BQ9H3T3 888 aa16.27■□□□□ 0.2
TPM1-223ENST00000560445 LY9Q9HBG7 655 aa16.27■□□□□ 0.2
TPM1-223ENST00000560445 COL20A1Q9P218 1284 aa16.27■□□□□ 0.2
TPM1-223ENST00000560445 MSRAQ9UJ68 235 aa16.27■□□□□ 0.2
TPM1-223ENST00000560445 SLC12A7Q9Y666 1083 aa16.27■□□□□ 0.2
TPM1-223ENST00000560445 SLC27A2O14975 620 aa16.26■□□□□ 0.19
TPM1-223ENST00000560445 MYCLP12524 364 aaPredicted RBP16.26■□□□□ 0.19
TPM1-223ENST00000560445 ZNF365Q70YC5 407 aa16.26■□□□□ 0.19
TPM1-223ENST00000560445 CHST3Q7LGC8 479 aa16.26■□□□□ 0.19
TPM1-223ENST00000560445 VSIG10LQ86VR7 867 aa16.26■□□□□ 0.19
TPM1-223ENST00000560445 AFG1LQ8WV93 481 aa16.26■□□□□ 0.19
TPM1-223ENST00000560445 TBC1D5Q92609 795 aa16.26■□□□□ 0.19
TPM1-223ENST00000560445 TRMT13Q9NUP7 481 aaKnown RBP16.26■□□□□ 0.19
TPM1-223ENST00000560445 DDX41Q9UJV9 622 aaKnown RBP16.26■□□□□ 0.19
TPM1-223ENST00000560445 SH2B2O14492 632 aaPredicted RBP16.25■□□□□ 0.19
TPM1-223ENST00000560445 PPP1R11O60927 126 aaPredicted RBP16.25■□□□□ 0.19
TPM1-223ENST00000560445 CDC45O75419 566 aa16.25■□□□□ 0.19
TPM1-223ENST00000560445 ARIH2O95376 493 aa16.25■□□□□ 0.19
TPM1-223ENST00000560445 HMGB1P09429 215 aaKnown RBP16.25■□□□□ 0.19
TPM1-223ENST00000560445 ANTXR2P58335 489 aa16.25■□□□□ 0.19
TPM1-223ENST00000560445 PGM5Q15124 567 aa16.25■□□□□ 0.19
TPM1-223ENST00000560445 LY6KQ17RY6 165 aa16.25■□□□□ 0.19
TPM1-223ENST00000560445 TMEM63BQ5T3F8 832 aa16.25■□□□□ 0.19
TPM1-223ENST00000560445 RASIP1Q5U651 963 aa16.25■□□□□ 0.19
TPM1-223ENST00000560445 CREB3L3Q68CJ9 461 aa16.25■□□□□ 0.19
TPM1-223ENST00000560445 C7orf31Q8N865 590 aa16.25■□□□□ 0.19
TPM1-223ENST00000560445 SMARCC2Q8TAQ2 1214 aa16.25■□□□□ 0.19
TPM1-223ENST00000560445 COPS5Q92905 334 aa16.25■□□□□ 0.19
TPM1-223ENST00000560445 TIFAQ96CG3 184 aa16.25■□□□□ 0.19
TPM1-223ENST00000560445 FAM161BQ96MY7 647 aa16.25■□□□□ 0.19
TPM1-223ENST00000560445 GUCD1Q96NT3 240 aa16.25■□□□□ 0.19
TPM1-223ENST00000560445 EHMT1Q9H9B1 1298 aa16.25■□□□□ 0.19
TPM1-223ENST00000560445 SLC4A7Q9Y6M7 1214 aa16.25■□□□□ 0.19
TPM1-223ENST00000560445 OPLAHO14841 1288 aa16.24■□□□□ 0.19
TPM1-223ENST00000560445 PPFIA4O75335 1185 aa16.24■□□□□ 0.19
TPM1-223ENST00000560445 FOSL2P15408 326 aa16.24■□□□□ 0.19
TPM1-223ENST00000560445 HOXA13P31271 388 aaPredicted RBP16.24■□□□□ 0.19
TPM1-223ENST00000560445 CCL23P55773 120 aa16.24■□□□□ 0.19
TPM1-223ENST00000560445 PTGISQ16647 500 aa16.24■□□□□ 0.19
TPM1-223ENST00000560445 FCHSD1Q86WN1 690 aa16.24■□□□□ 0.19
TPM1-223ENST00000560445 GIMAP8Q8ND71 665 aaPredicted RBP16.24■□□□□ 0.19
TPM1-223ENST00000560445 AFAP1L1Q8TED9 768 aa16.24■□□□□ 0.19
TPM1-223ENST00000560445 CDHR1Q96JP9 859 aa16.24■□□□□ 0.19
TPM1-223ENST00000560445 CDX2Q99626 313 aaPredicted RBP16.24■□□□□ 0.19
TPM1-223ENST00000560445 MLXIPQ9HAP2 919 aa16.24■□□□□ 0.19
TPM1-223ENST00000560445 BAZ2BQ9UIF8 2168 aaKnown RBP16.23■□□□□ 0.19
TPM1-223ENST00000560445 PIK3CDO00329 1044 aa16.23■□□□□ 0.19
TPM1-223ENST00000560445 NOP56O00567 594 aaKnown RBP16.23■□□□□ 0.19
TPM1-223ENST00000560445 CYTH3O43739 400 aa16.23■□□□□ 0.19
TPM1-223ENST00000560445 F2P00734 622 aa16.23■□□□□ 0.19
TPM1-223ENST00000560445 ACRP10323 421 aa16.23■□□□□ 0.19
TPM1-223ENST00000560445 PTGS1P23219 599 aa16.23■□□□□ 0.19
TPM1-223ENST00000560445 CHMP4BP1P59074 171 aa16.23■□□□□ 0.19
TPM1-223ENST00000560445 NEDD9Q14511 834 aa16.23■□□□□ 0.19
TPM1-223ENST00000560445 NECTIN1Q15223 517 aa16.23■□□□□ 0.19
TPM1-223ENST00000560445 SGMS1Q86VZ5 419 aa16.23■□□□□ 0.19
TPM1-223ENST00000560445 SPATA33Q96N06 139 aa16.23■□□□□ 0.19
TPM1-223ENST00000560445 WNT8AQ9H1J5 351 aa16.23■□□□□ 0.19
TPM1-223ENST00000560445 RBM28Q9NW13 759 aaKnown RBP16.23■□□□□ 0.19
TPM1-223ENST00000560445 FRMPD4Q14CM0 1322 aa16.22■□□□□ 0.19
TPM1-223ENST00000560445 ZBBXA8MT70 800 aa16.22■□□□□ 0.19
TPM1-223ENST00000560445 FIBPO43427 364 aa16.22■□□□□ 0.19
TPM1-223ENST00000560445 BAIAP3O94812 1187 aa16.22■□□□□ 0.19
TPM1-223ENST00000560445 GGPS1O95749 300 aa16.22■□□□□ 0.19
TPM1-223ENST00000560445 CYP2C9P11712 490 aa16.22■□□□□ 0.19
TPM1-223ENST00000560445 HOXD8P13378 290 aaPredicted RBP16.22■□□□□ 0.19
TPM1-223ENST00000560445 CELF3Q5SZQ8 465 aaKnown RBP16.22■□□□□ 0.19
TPM1-223ENST00000560445 C16orf59Q7L2K0 433 aa16.22■□□□□ 0.19
TPM1-223ENST00000560445 NLRX1Q86UT6 975 aa16.22■□□□□ 0.19
TPM1-223ENST00000560445 NEK1Q96PY6 1258 aa16.22■□□□□ 0.19
TPM1-223ENST00000560445 GAS2L1Q99501 681 aaPredicted RBP16.22■□□□□ 0.19
TPM1-223ENST00000560445 ZNF576Q9H609 170 aa16.22■□□□□ 0.19
TPM1-223ENST00000560445 SLC28A3Q9HAS3 691 aa16.22■□□□□ 0.19
TPM1-223ENST00000560445 TAF6LQ9Y6J9 622 aa16.22■□□□□ 0.19
TPM1-223ENST00000560445 TANC1Q9C0D5 1861 aa16.22■□□□□ 0.19
TPM1-223ENST00000560445 LAMA2P24043 3122 aaKnown RBP16.21■□□□□ 0.19
TPM1-223ENST00000560445 hCG_1984214I3L0E3 225 aa16.21■□□□□ 0.19
TPM1-223ENST00000560445 PSEN2P49810 448 aa16.21■□□□□ 0.19
TPM1-223ENST00000560445 RCAN1P53805 252 aa16.21■□□□□ 0.19
TPM1-223ENST00000560445 FGD1P98174 961 aa16.21■□□□□ 0.19
Retrieved 100 of 20,778 RNA–protein pairs in 23.1 ms