RNA–Protein interactions for RNA: ENST00000559834.1

HDDC3-204, Transcript of HD domain containing 3, humanhuman

TSL 2

Gene HDDC3, Length 1,076 nt, Biotype retained intron, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
HDDC3-204ENST00000559834 BMP1P13497 986 aa10.69□□□□□ -0.7
HDDC3-204ENST00000559834 SELPP16109 830 aa10.69□□□□□ -0.7
HDDC3-204ENST00000559834 COL9A1P20849 921 aa10.69□□□□□ -0.7
HDDC3-204ENST00000559834 TRAF1Q13077 416 aa10.69□□□□□ -0.7
HDDC3-204ENST00000559834 QRICH1Q2TAL8 776 aa10.69□□□□□ -0.7
HDDC3-204ENST00000559834 KCNV1Q6PIU1 500 aa10.69□□□□□ -0.7
HDDC3-204ENST00000559834 CHD1LQ86WJ1 897 aa10.69□□□□□ -0.7
HDDC3-204ENST00000559834 PLEKHM2Q8IWE5 1019 aa10.69□□□□□ -0.7
HDDC3-204ENST00000559834 DHX37Q8IY37 1157 aaKnown RBP10.69□□□□□ -0.7
HDDC3-204ENST00000559834 PPP1R13LQ8WUF5 828 aa10.69□□□□□ -0.7
HDDC3-204ENST00000559834 ARNTL2Q8WYA1 636 aa10.69□□□□□ -0.7
HDDC3-204ENST00000559834 ZBED2Q9BTP6 218 aa10.69□□□□□ -0.7
HDDC3-204ENST00000559834 AMNQ9BXJ7 453 aa10.69□□□□□ -0.7
HDDC3-204ENST00000559834 CERS4Q9HA82 394 aa10.69□□□□□ -0.7
HDDC3-204ENST00000559834 DDX41Q9UJV9 622 aaKnown RBP10.69□□□□□ -0.7
HDDC3-204ENST00000559834 MTCH2Q9Y6C9 303 aa10.69□□□□□ -0.7
HDDC3-204ENST00000559834 MRVI1Q9Y6F6 885 aa10.69□□□□□ -0.7
HDDC3-204ENST00000559834 LAMA2P24043 3122 aaKnown RBP10.69□□□□□ -0.7
HDDC3-204ENST00000559834 SCN10AQ9Y5Y9 1956 aa10.68□□□□□ -0.7
HDDC3-204ENST00000559834 LRRC37A2A6NM11 1700 aa10.68□□□□□ -0.7
HDDC3-204ENST00000559834 ABHD14A-ACY1A0A1B0GW23 586 aa10.68□□□□□ -0.7
HDDC3-204ENST00000559834 RFXAPO00287 272 aa10.68□□□□□ -0.7
HDDC3-204ENST00000559834 PPFIA4O75335 1185 aa10.68□□□□□ -0.7
HDDC3-204ENST00000559834 CFBP00751 764 aa10.68□□□□□ -0.7
HDDC3-204ENST00000559834 EIF2AK2P19525 551 aaKnown RBP10.68□□□□□ -0.7
HDDC3-204ENST00000559834 TAP1Q03518 808 aa10.68□□□□□ -0.7
HDDC3-204ENST00000559834 ARHGAP1Q07960 439 aa10.68□□□□□ -0.7
HDDC3-204ENST00000559834 RBL2Q08999 1139 aa10.68□□□□□ -0.7
HDDC3-204ENST00000559834 GDF6Q6KF10 455 aaPredicted RBP10.68□□□□□ -0.7
HDDC3-204ENST00000559834 CNKSR3Q6P9H4 555 aa10.68□□□□□ -0.7
HDDC3-204ENST00000559834 LRRC8DQ7L1W4 858 aa10.68□□□□□ -0.7
HDDC3-204ENST00000559834 ENAHQ8N8S7 591 aaPredicted RBP10.68□□□□□ -0.7
HDDC3-204ENST00000559834 PPTC7Q8NI37 304 aa10.68□□□□□ -0.7
HDDC3-204ENST00000559834 KAT2BQ92831 832 aa10.68□□□□□ -0.7
HDDC3-204ENST00000559834 EMID1Q96A84 441 aaPredicted RBP10.68□□□□□ -0.7
HDDC3-204ENST00000559834 JMJD4Q9H9V9 463 aa10.68□□□□□ -0.7
HDDC3-204ENST00000559834 COL20A1Q9P218 1284 aa10.68□□□□□ -0.7
HDDC3-204ENST00000559834 GTF2IRD1Q9UHL9 959 aa10.68□□□□□ -0.7
HDDC3-204ENST00000559834 UNC80Q8N2C7 3258 aa10.68□□□□□ -0.7
HDDC3-204ENST00000559834 LCTP09848 1927 aa10.67□□□□□ -0.7
HDDC3-204ENST00000559834 KLRF2D3W0D1 207 aa10.67□□□□□ -0.7
HDDC3-204ENST00000559834 TGFB3P10600 412 aa10.67□□□□□ -0.7
HDDC3-204ENST00000559834 CKBP12277 381 aa10.67□□□□□ -0.7
HDDC3-204ENST00000559834 PSEN2P49810 448 aa10.67□□□□□ -0.7
HDDC3-204ENST00000559834 NUCB1Q02818 461 aa10.67□□□□□ -0.7
HDDC3-204ENST00000559834 TRDNQ13061 729 aa10.67□□□□□ -0.7
HDDC3-204ENST00000559834 PTK7Q13308 1070 aa10.67□□□□□ -0.7
HDDC3-204ENST00000559834 IKBKEQ14164 716 aa10.67□□□□□ -0.7
HDDC3-204ENST00000559834 IFIT1BQ5T764 474 aaKnown RBP10.67□□□□□ -0.7
HDDC3-204ENST00000559834 HLA-CQ95604 372 aa10.67□□□□□ -0.7
HDDC3-204ENST00000559834 ALG1Q9BT22 464 aa10.67□□□□□ -0.7
HDDC3-204ENST00000559834 C1QTNF1Q9BXJ1 281 aa10.67□□□□□ -0.7
HDDC3-204ENST00000559834 PXMP2Q9NR77 195 aa10.67□□□□□ -0.7
HDDC3-204ENST00000559834 LMCD1Q9NZU5 365 aa10.67□□□□□ -0.7
HDDC3-204ENST00000559834 HDAC6Q9UBN7 1215 aa10.67□□□□□ -0.7
HDDC3-204ENST00000559834 PCDHA1Q9Y5I3 950 aa10.67□□□□□ -0.7
HDDC3-204ENST00000559834 ZBTB5O15062 677 aa10.66□□□□□ -0.7
HDDC3-204ENST00000559834 CXCL10P02778 98 aa10.66□□□□□ -0.7
HDDC3-204ENST00000559834 MYCLP12524 364 aaPredicted RBP10.66□□□□□ -0.7
HDDC3-204ENST00000559834 HSD17B4P51659 736 aa10.66□□□□□ -0.7
HDDC3-204ENST00000559834 WDR5P61964 334 aaKnown RBP10.66□□□□□ -0.7
HDDC3-204ENST00000559834 TFF2Q03403 129 aa10.66□□□□□ -0.7
HDDC3-204ENST00000559834 MFSD10Q14728 455 aa10.66□□□□□ -0.7
HDDC3-204ENST00000559834 KIAA0753Q2KHM9 967 aa10.66□□□□□ -0.7
HDDC3-204ENST00000559834 STOX1Q6ZVD7 989 aa10.66□□□□□ -0.7
HDDC3-204ENST00000559834 SPATA33Q96N06 139 aa10.66□□□□□ -0.7
HDDC3-204ENST00000559834 RAD9AQ99638 391 aa10.66□□□□□ -0.7
HDDC3-204ENST00000559834 ERICH2A1L162 156 aa10.65□□□□□ -0.7
HDDC3-204ENST00000559834 EPOPA6NHQ4 379 aa10.65□□□□□ -0.7
HDDC3-204ENST00000559834 HAS3O00219 553 aa10.65□□□□□ -0.7
HDDC3-204ENST00000559834 NBNO60934 754 aa10.65□□□□□ -0.7
HDDC3-204ENST00000559834 F2P00734 622 aa10.65□□□□□ -0.7
HDDC3-204ENST00000559834 IGHDP01880 384 aa10.65□□□□□ -0.7
HDDC3-204ENST00000559834 GHRHRQ02643 423 aa10.65□□□□□ -0.7
HDDC3-204ENST00000559834 GRB10Q13322 594 aa10.65□□□□□ -0.7
HDDC3-204ENST00000559834 GPNMBQ14956 572 aa10.65□□□□□ -0.7
HDDC3-204ENST00000559834 CELF3Q5SZQ8 465 aaKnown RBP10.65□□□□□ -0.7
HDDC3-204ENST00000559834 MYSM1Q5VVJ2 828 aa10.65□□□□□ -0.7
HDDC3-204ENST00000559834 VSIG10LQ86VR7 867 aa10.65□□□□□ -0.7
HDDC3-204ENST00000559834 STAG2Q8N3U4 1231 aa10.65□□□□□ -0.7
HDDC3-204ENST00000559834 DHX38Q92620 1227 aaKnown RBP10.65□□□□□ -0.7
HDDC3-204ENST00000559834 CTAGE1Q96RT6 745 aa10.65□□□□□ -0.7
HDDC3-204ENST00000559834 PDCD2LQ9BRP1 358 aa10.65□□□□□ -0.7
HDDC3-204ENST00000559834 MLXIPQ9HAP2 919 aa10.65□□□□□ -0.7
HDDC3-204ENST00000559834 PRRC2BQ5JSZ5 2229 aaKnown RBP10.65□□□□□ -0.71
HDDC3-204ENST00000559834 EMSYQ7Z589 1322 aa10.64□□□□□ -0.71
HDDC3-204ENST00000559834 GBF1Q92538 1859 aa10.64□□□□□ -0.71
HDDC3-204ENST00000559834 SCN5AQ14524 2016 aa10.64□□□□□ -0.71
HDDC3-204ENST00000559834 PALM3A6NDB9 673 aaPredicted RBP10.64□□□□□ -0.71
HDDC3-204ENST00000559834 GCOM1H8Y6P7 765 aaPredicted RBP10.64□□□□□ -0.71
HDDC3-204ENST00000559834 LGR5O75473 907 aa10.64□□□□□ -0.71
HDDC3-204ENST00000559834 GJB5O95377 273 aa10.64□□□□□ -0.71
HDDC3-204ENST00000559834 POLR2MP0CAP2 368 aa10.64□□□□□ -0.71
HDDC3-204ENST00000559834 CCND2P30279 289 aa10.64□□□□□ -0.71
HDDC3-204ENST00000559834 KCNQ1P51787 676 aa10.64□□□□□ -0.71
HDDC3-204ENST00000559834 PGM5Q15124 567 aa10.64□□□□□ -0.71
HDDC3-204ENST00000559834 ZNF618Q5T7W0 954 aa10.64□□□□□ -0.71
HDDC3-204ENST00000559834 MTMR8Q96EF0 704 aa10.64□□□□□ -0.71
HDDC3-204ENST00000559834 NECAB3Q96P71 396 aaPredicted RBP10.64□□□□□ -0.71
HDDC3-204ENST00000559834 TGS1Q96RS0 853 aaKnown RBP10.64□□□□□ -0.71
Retrieved 100 of 20,778 RNA–protein pairs in 94.7 ms