RNA–Protein interactions for RNA: ENST00000557740.5

SHMT2-235, Transcript of serine hydroxymethyltransferase 2, humanhuman

TSL 4

Gene SHMT2, Length 569 nt, Biotype processed transcript, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SHMT2-235ENST00000557740 MYCLP12524 364 aaPredicted RBP16.97■□□□□ 0.31
SHMT2-235ENST00000557740 CASTP20810 708 aaKnown RBP16.97■□□□□ 0.31
SHMT2-235ENST00000557740 RFC2P35250 354 aa16.97■□□□□ 0.31
SHMT2-235ENST00000557740 BFSP2Q13515 415 aa16.97■□□□□ 0.31
SHMT2-235ENST00000557740 DGKDQ16760 1214 aa16.97■□□□□ 0.31
SHMT2-235ENST00000557740 STOX1Q6ZVD7 989 aa16.97■□□□□ 0.31
SHMT2-235ENST00000557740 DEFB128Q7Z7B8 93 aa16.97■□□□□ 0.31
SHMT2-235ENST00000557740 SAMD3Q8N6K7 520 aa16.97■□□□□ 0.31
SHMT2-235ENST00000557740 CCDC155Q8N6L0 562 aa16.97■□□□□ 0.31
SHMT2-235ENST00000557740 PDCD2LQ9BRP1 358 aa16.97■□□□□ 0.31
SHMT2-235ENST00000557740 RIOX1Q9H6W3 641 aa16.97■□□□□ 0.31
SHMT2-235ENST00000557740 SENP2Q9HC62 589 aa16.97■□□□□ 0.31
SHMT2-235ENST00000557740 RBM8AQ9Y5S9 174 aaKnown RBP16.97■□□□□ 0.31
SHMT2-235ENST00000557740 GCOM1H8Y6P7 765 aaPredicted RBP16.96■□□□□ 0.31
SHMT2-235ENST00000557740 POLR2MP0CAP2 368 aa16.96■□□□□ 0.31
SHMT2-235ENST00000557740 ACTN1P12814 892 aa16.96■□□□□ 0.31
SHMT2-235ENST00000557740 PTGISQ16647 500 aa16.96■□□□□ 0.31
SHMT2-235ENST00000557740 SLC35G1Q2M3R5 365 aa16.96■□□□□ 0.31
SHMT2-235ENST00000557740 MAP4K1Q92918 833 aa16.96■□□□□ 0.31
SHMT2-235ENST00000557740 EMID1Q96A84 441 aaPredicted RBP16.96■□□□□ 0.31
SHMT2-235ENST00000557740 NKX2-4Q9H2Z4 354 aa16.96■□□□□ 0.31
SHMT2-235ENST00000557740 SLC28A3Q9HAS3 691 aa16.96■□□□□ 0.31
SHMT2-235ENST00000557740 DDX41Q9UJV9 622 aaKnown RBP16.96■□□□□ 0.31
SHMT2-235ENST00000557740 PNMA6FA0A0J9YX94 578 aa16.95■□□□□ 0.3
SHMT2-235ENST00000557740 ATP2A2P16615 1042 aaKnown RBP16.95■□□□□ 0.3
SHMT2-235ENST00000557740 CCND2P30279 289 aa16.95■□□□□ 0.3
SHMT2-235ENST00000557740 ANTXR2P58335 489 aa16.95■□□□□ 0.3
SHMT2-235ENST00000557740 TROAPQ12815 778 aa16.95■□□□□ 0.3
SHMT2-235ENST00000557740 LAMC2Q13753 1193 aa16.95■□□□□ 0.3
SHMT2-235ENST00000557740 PGM5Q15124 567 aa16.95■□□□□ 0.3
SHMT2-235ENST00000557740 KCNV1Q6PIU1 500 aa16.95■□□□□ 0.3
SHMT2-235ENST00000557740 CASC1Q6TDU7 716 aa16.95■□□□□ 0.3
SHMT2-235ENST00000557740 DHX37Q8IY37 1157 aaKnown RBP16.95■□□□□ 0.3
SHMT2-235ENST00000557740 MB21D2Q8IYB1 491 aaPredicted RBP16.95■□□□□ 0.3
SHMT2-235ENST00000557740 PPTC7Q8NI37 304 aa16.95■□□□□ 0.3
SHMT2-235ENST00000557740 KATNAL1Q9BW62 490 aa16.95■□□□□ 0.3
SHMT2-235ENST00000557740 FTOQ9C0B1 505 aaKnown RBP eCLIP16.95■□□□□ 0.3
SHMT2-235ENST00000557740 PRDM12Q9H4Q4 367 aa16.95■□□□□ 0.3
SHMT2-235ENST00000557740 MYH6P13533 1939 aa16.94■□□□□ 0.3
SHMT2-235ENST00000557740 DDAH1O94760 285 aa16.94■□□□□ 0.3
SHMT2-235ENST00000557740 ZNF286BP0CG31 522 aa16.94■□□□□ 0.3
SHMT2-235ENST00000557740 KIF5BP33176 963 aa16.94■□□□□ 0.3
SHMT2-235ENST00000557740 SESTD1Q86VW0 696 aa16.94■□□□□ 0.3
SHMT2-235ENST00000557740 FCHSD1Q86WN1 690 aa16.94■□□□□ 0.3
SHMT2-235ENST00000557740 C7orf31Q8N865 590 aa16.94■□□□□ 0.3
SHMT2-235ENST00000557740 IL31RAQ8NI17 732 aa16.94■□□□□ 0.3
SHMT2-235ENST00000557740 CTCFLQ8NI51 663 aaPredicted RBP16.94■□□□□ 0.3
SHMT2-235ENST00000557740 CAGE1Q8TC20 777 aa16.94■□□□□ 0.3
SHMT2-235ENST00000557740 PIBF1Q8WXW3 757 aa16.94■□□□□ 0.3
SHMT2-235ENST00000557740 KAT2BQ92831 832 aa16.94■□□□□ 0.3
SHMT2-235ENST00000557740 YBX2Q9Y2T7 364 aaKnown RBP16.94■□□□□ 0.3
SHMT2-235ENST00000557740 CYTH3O43739 400 aa16.93■□□□□ 0.3
SHMT2-235ENST00000557740 IQCF3P0C7M6 154 aa16.93■□□□□ 0.3
SHMT2-235ENST00000557740 PSEN2P49810 448 aa16.93■□□□□ 0.3
SHMT2-235ENST00000557740 RABGGTBP53611 331 aa16.93■□□□□ 0.3
SHMT2-235ENST00000557740 MFSD10Q14728 455 aa16.93■□□□□ 0.3
SHMT2-235ENST00000557740 PPP2R2DQ66LE6 453 aa16.93■□□□□ 0.3
SHMT2-235ENST00000557740 GDF6Q6KF10 455 aaPredicted RBP16.93■□□□□ 0.3
SHMT2-235ENST00000557740 NFXL1Q6ZNB6 911 aa16.93■□□□□ 0.3
SHMT2-235ENST00000557740 IGDCC4Q8TDY8 1250 aa16.93■□□□□ 0.3
SHMT2-235ENST00000557740 VWCEQ96DN2 955 aa16.93■□□□□ 0.3
SHMT2-235ENST00000557740 RRP36Q96EU6 259 aaKnown RBP16.93■□□□□ 0.3
SHMT2-235ENST00000557740 SPATA33Q96N06 139 aa16.93■□□□□ 0.3
SHMT2-235ENST00000557740 ALG1Q9BT22 464 aa16.93■□□□□ 0.3
SHMT2-235ENST00000557740 COL25A1Q9BXS0 654 aaPredicted RBP16.93■□□□□ 0.3
SHMT2-235ENST00000557740 PCDHA11Q9Y5I1 949 aa16.93■□□□□ 0.3
SHMT2-235ENST00000557740 PRC1O43663 620 aa16.92■□□□□ 0.3
SHMT2-235ENST00000557740 SORBS3O60504 671 aa16.92■□□□□ 0.3
SHMT2-235ENST00000557740 RGS20O76081 388 aa16.92■□□□□ 0.3
SHMT2-235ENST00000557740 GGPS1O95749 300 aa16.92■□□□□ 0.3
SHMT2-235ENST00000557740 F2P00734 622 aa16.92■□□□□ 0.3
SHMT2-235ENST00000557740 KIAA0753Q2KHM9 967 aa16.92■□□□□ 0.3
SHMT2-235ENST00000557740 CELF3Q5SZQ8 465 aaKnown RBP16.92■□□□□ 0.3
SHMT2-235ENST00000557740 VSIG10LQ86VR7 867 aa16.92■□□□□ 0.3
SHMT2-235ENST00000557740 ZNF654Q8IZM8 581 aa16.92■□□□□ 0.3
SHMT2-235ENST00000557740 AFAP1L1Q8TED9 768 aa16.92■□□□□ 0.3
SHMT2-235ENST00000557740 MYL10Q9BUA6 226 aa16.92■□□□□ 0.3
SHMT2-235ENST00000557740 SPZ1Q9BXG8 430 aa16.92■□□□□ 0.3
SHMT2-235ENST00000557740 LY9Q9HBG7 655 aa16.92■□□□□ 0.3
SHMT2-235ENST00000557740 SEC63Q9UGP8 760 aaKnown RBP16.92■□□□□ 0.3
SHMT2-235ENST00000557740 GTF2IRD1Q9UHL9 959 aa16.92■□□□□ 0.3
SHMT2-235ENST00000557740 CDH23Q9H251 3354 aa16.92■□□□□ 0.3
SHMT2-235ENST00000557740 CCDC69A6NI79 296 aa16.91■□□□□ 0.3
SHMT2-235ENST00000557740 TGFB3P10600 412 aa16.91■□□□□ 0.3
SHMT2-235ENST00000557740 SELPP16109 830 aa16.91■□□□□ 0.3
SHMT2-235ENST00000557740 UBA1P22314 1058 aaKnown RBP16.91■□□□□ 0.3
SHMT2-235ENST00000557740 MCM5P33992 734 aa16.91■□□□□ 0.3
SHMT2-235ENST00000557740 GNPTABQ3T906 1256 aa16.91■□□□□ 0.3
SHMT2-235ENST00000557740 CUL5Q93034 780 aa16.91■□□□□ 0.3
SHMT2-235ENST00000557740 SLC9A7Q96T83 725 aa16.91■□□□□ 0.3
SHMT2-235ENST00000557740 MAP3K14Q99558 947 aa16.91■□□□□ 0.3
SHMT2-235ENST00000557740 ESYT1Q9BSJ8 1104 aa16.91■□□□□ 0.3
SHMT2-235ENST00000557740 MTA3Q9BTC8 594 aa16.91■□□□□ 0.3
SHMT2-235ENST00000557740 LSG1Q9H089 658 aaKnown RBP16.91■□□□□ 0.3
SHMT2-235ENST00000557740 MLXIPQ9HAP2 919 aa16.91■□□□□ 0.3
SHMT2-235ENST00000557740 HDAC6Q9UBN7 1215 aa16.91■□□□□ 0.3
SHMT2-235ENST00000557740 UNC80Q8N2C7 3258 aa16.9■□□□□ 0.3
SHMT2-235ENST00000557740 KIAA1217Q5T5P2 1943 aa16.9■□□□□ 0.3
SHMT2-235ENST00000557740 SH2B2O14492 632 aaPredicted RBP16.9■□□□□ 0.3
SHMT2-235ENST00000557740 HOXD8P13378 290 aaPredicted RBP16.9■□□□□ 0.3
Retrieved 100 of 20,778 RNA–protein pairs in 13.7 ms