RNA–Protein interactions for RNA: ENST00000556798.1

SHMT2-225, Transcript of serine hydroxymethyltransferase 2, humanhuman

TSL 2

Gene SHMT2, Length 525 nt, Biotype retained intron, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SHMT2-225ENST00000556798 SMPD1P17405 629 aa20.02■□□□□ 0.8
SHMT2-225ENST00000556798 MRPS9P82933 396 aaKnown RBP20.02■□□□□ 0.8
SHMT2-225ENST00000556798 TNFAIP2Q03169 654 aa20.02■□□□□ 0.8
SHMT2-225ENST00000556798 AP3B2Q13367 1082 aa20.02■□□□□ 0.8
SHMT2-225ENST00000556798 XPNPEP3Q9NQH7 507 aa20.02■□□□□ 0.8
SHMT2-225ENST00000556798 OGDHLQ9ULD0 1010 aa20.02■□□□□ 0.8
SHMT2-225ENST00000556798 PCDHA4Q9UN74 947 aa20.02■□□□□ 0.8
SHMT2-225ENST00000556798 EIF3JO75822 258 aaKnown RBP20.01■□□□□ 0.79
SHMT2-225ENST00000556798 RGS20O76081 388 aa20.01■□□□□ 0.79
SHMT2-225ENST00000556798 ARIH2O95376 493 aa20.01■□□□□ 0.79
SHMT2-225ENST00000556798 PGK1P00558 417 aa20.01■□□□□ 0.79
SHMT2-225ENST00000556798 NPY5RQ15761 445 aa20.01■□□□□ 0.79
SHMT2-225ENST00000556798 PCNX4Q63HM2 1172 aa20.01■□□□□ 0.79
SHMT2-225ENST00000556798 BICD2Q8TD16 824 aa20.01■□□□□ 0.79
SHMT2-225ENST00000556798 PHF20Q9BVI0 1012 aa20.01■□□□□ 0.79
SHMT2-225ENST00000556798 WDR11Q9BZH6 1224 aa20.01■□□□□ 0.79
SHMT2-225ENST00000556798 EHMT1Q9H9B1 1298 aa20.01■□□□□ 0.79
SHMT2-225ENST00000556798 RTEL1Q9NZ71 1219 aa20.01■□□□□ 0.79
SHMT2-225ENST00000556798 SYNRGQ9UMZ2 1314 aa20.01■□□□□ 0.79
SHMT2-225ENST00000556798 RBM47A0AV96 593 aaKnown RBP20■□□□□ 0.79
SHMT2-225ENST00000556798 DUSP11O75319 330 aaKnown RBP20■□□□□ 0.79
SHMT2-225ENST00000556798 FOSP01100 380 aaPredicted RBP20■□□□□ 0.79
SHMT2-225ENST00000556798 XBP1P17861 261 aa20■□□□□ 0.79
SHMT2-225ENST00000556798 IRX5P78411 483 aaPredicted RBP20■□□□□ 0.79
SHMT2-225ENST00000556798 IQSEC1Q6DN90 963 aa20■□□□□ 0.79
SHMT2-225ENST00000556798 TEX2Q8IWB9 1127 aa20■□□□□ 0.79
SHMT2-225ENST00000556798 BLIDQ8IZY5 108 aa20■□□□□ 0.79
SHMT2-225ENST00000556798 SCFD2Q8WU76 684 aa20■□□□□ 0.79
SHMT2-225ENST00000556798 MYADML2A6NDP7 307 aa19.99■□□□□ 0.79
SHMT2-225ENST00000556798 HMGN5P82970 282 aaKnown RBP19.99■□□□□ 0.79
SHMT2-225ENST00000556798 TTLL4Q14679 1199 aa19.99■□□□□ 0.79
SHMT2-225ENST00000556798 DUSP28Q4G0W2 176 aa19.99■□□□□ 0.79
SHMT2-225ENST00000556798 TLK2Q86UE8 772 aa19.99■□□□□ 0.79
SHMT2-225ENST00000556798 DAGLBQ8NCG7 672 aa19.99■□□□□ 0.79
SHMT2-225ENST00000556798 DIS3LQ8TF46 1054 aaKnown RBP19.99■□□□□ 0.79
SHMT2-225ENST00000556798 COPS5Q92905 334 aa19.99■□□□□ 0.79
SHMT2-225ENST00000556798 GNEQ9Y223 722 aaKnown RBP19.99■□□□□ 0.79
SHMT2-225ENST00000556798 MRVI1Q9Y6F6 885 aa19.99■□□□□ 0.79
SHMT2-225ENST00000556798 ALPK3Q96L96 1907 aa19.98■□□□□ 0.79
SHMT2-225ENST00000556798 ADAMTS4O75173 837 aa19.98■□□□□ 0.79
SHMT2-225ENST00000556798 FARP2O94887 1054 aaPredicted RBP19.98■□□□□ 0.79
SHMT2-225ENST00000556798 TXNP10599 105 aaKnown RBP19.98■□□□□ 0.79
SHMT2-225ENST00000556798 SREBF1P36956 1147 aa19.98■□□□□ 0.79
SHMT2-225ENST00000556798 MNX1P50219 401 aaPredicted RBP19.98■□□□□ 0.79
SHMT2-225ENST00000556798 GUCY1B3Q02153 619 aa19.98■□□□□ 0.79
SHMT2-225ENST00000556798 LY6KQ17RY6 165 aa19.98■□□□□ 0.79
SHMT2-225ENST00000556798 FAM177A1Q8N128 213 aaPredicted RBP19.98■□□□□ 0.79
SHMT2-225ENST00000556798 FAM184AQ8NB25 1140 aa19.98■□□□□ 0.79
SHMT2-225ENST00000556798 OXER1Q8TDS5 423 aa19.98■□□□□ 0.79
SHMT2-225ENST00000556798 M0R2N6 131 aa19.97■□□□□ 0.79
SHMT2-225ENST00000556798 SORBS3O60504 671 aa19.97■□□□□ 0.79
SHMT2-225ENST00000556798 C6orf222P0C671 652 aaPredicted RBP19.97■□□□□ 0.79
SHMT2-225ENST00000556798 ARHGAP4P98171 946 aa19.97■□□□□ 0.79
SHMT2-225ENST00000556798 TRIM29Q14134 588 aa19.97■□□□□ 0.79
SHMT2-225ENST00000556798 LRRC41Q15345 812 aa19.97■□□□□ 0.79
SHMT2-225ENST00000556798 KRT40Q6A162 431 aa19.97■□□□□ 0.79
SHMT2-225ENST00000556798 GALNT17Q6IS24 598 aa19.97■□□□□ 0.79
SHMT2-225ENST00000556798 XRRA1Q6P2D8 792 aa19.97■□□□□ 0.79
SHMT2-225ENST00000556798 CCDC62Q6P9F0 684 aa19.97■□□□□ 0.79
SHMT2-225ENST00000556798 INPP4AQ96PE3 977 aaPredicted RBP19.97■□□□□ 0.79
SHMT2-225ENST00000556798 MKI67P46013 3256 aaKnown RBP19.97■□□□□ 0.79
SHMT2-225ENST00000556798 K7ELQ4 463 aaPredicted RBP19.96■□□□□ 0.79
SHMT2-225ENST00000556798 DYNC1LI2O43237 492 aaPredicted RBP19.96■□□□□ 0.79
SHMT2-225ENST00000556798 STAM2O75886 525 aa19.96■□□□□ 0.79
SHMT2-225ENST00000556798 ITGB5P18084 799 aa19.96■□□□□ 0.79
SHMT2-225ENST00000556798 BEX3Q00994 111 aa19.96■□□□□ 0.79
SHMT2-225ENST00000556798 SEMA3FQ13275 785 aa19.96■□□□□ 0.79
SHMT2-225ENST00000556798 GNPTABQ3T906 1256 aa19.96■□□□□ 0.79
SHMT2-225ENST00000556798 ANKLE1Q8NAG6 615 aa19.96■□□□□ 0.79
SHMT2-225ENST00000556798 OR6J1Q8NGC5 347 aa19.96■□□□□ 0.79
SHMT2-225ENST00000556798 C8orf76Q96K31 380 aa19.96■□□□□ 0.79
SHMT2-225ENST00000556798 UPF3AQ9H1J1 476 aaKnown RBP19.96■□□□□ 0.79
SHMT2-225ENST00000556798 DDX41Q9UJV9 622 aaKnown RBP19.96■□□□□ 0.79
SHMT2-225ENST00000556798 DNM1LO00429 736 aa19.95■□□□□ 0.78
SHMT2-225ENST00000556798 CTAGE5O15320 804 aa19.95■□□□□ 0.78
SHMT2-225ENST00000556798 MMP1P03956 469 aa19.95■□□□□ 0.78
SHMT2-225ENST00000556798 UBA1P22314 1058 aaKnown RBP19.95■□□□□ 0.78
SHMT2-225ENST00000556798 GJB2P29033 226 aa19.95■□□□□ 0.78
SHMT2-225ENST00000556798 KRT2P35908 639 aa19.95■□□□□ 0.78
SHMT2-225ENST00000556798 GJA9P57773 515 aa19.95■□□□□ 0.78
SHMT2-225ENST00000556798 CUL4AQ13619 759 aa19.95■□□□□ 0.78
SHMT2-225ENST00000556798 MCTP2Q6DN12 878 aa19.95■□□□□ 0.78
SHMT2-225ENST00000556798 RNF180Q86T96 592 aa19.95■□□□□ 0.78
SHMT2-225ENST00000556798 ARRDC4Q8NCT1 418 aa19.95■□□□□ 0.78
SHMT2-225ENST00000556798 CYP2W1Q8TAV3 490 aa19.95■□□□□ 0.78
SHMT2-225ENST00000556798 CRYGNQ8WXF5 182 aa19.95■□□□□ 0.78
SHMT2-225ENST00000556798 SNX21Q969T3 373 aa19.95■□□□□ 0.78
SHMT2-225ENST00000556798 PAWRQ96IZ0 340 aaKnown RBP19.95■□□□□ 0.78
SHMT2-225ENST00000556798 AP5M1Q9H0R1 490 aa19.95■□□□□ 0.78
SHMT2-225ENST00000556798 UBIAD1Q9Y5Z9 338 aa19.95■□□□□ 0.78
SHMT2-225ENST00000556798 KBTBD13C9JR72 458 aa19.94■□□□□ 0.78
SHMT2-225ENST00000556798 NKRFO15226 690 aaKnown RBP eCLIP19.94■□□□□ 0.78
SHMT2-225ENST00000556798 ZNF76P36508 570 aa19.94■□□□□ 0.78
SHMT2-225ENST00000556798 SP2Q02086 613 aa19.94■□□□□ 0.78
SHMT2-225ENST00000556798 NR5A1Q13285 461 aa19.94■□□□□ 0.78
SHMT2-225ENST00000556798 UBE2Q1Q7Z7E8 422 aa19.94■□□□□ 0.78
SHMT2-225ENST00000556798 NLRX1Q86UT6 975 aa19.94■□□□□ 0.78
SHMT2-225ENST00000556798 KLHDC9Q8NEP7 349 aa19.94■□□□□ 0.78
SHMT2-225ENST00000556798 SPC25Q9HBM1 224 aa19.94■□□□□ 0.78
SHMT2-225ENST00000556798 PKD2L1Q9P0L9 805 aa19.94■□□□□ 0.78
Retrieved 100 of 20,778 RNA–protein pairs in 23.7 ms