RNA–Protein interactions for RNA: ENST00000553949.1

SHMT2-209, Transcript of serine hydroxymethyltransferase 2, humanhuman

TSL 3

Gene SHMT2, Length 552 nt, Biotype processed transcript, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SHMT2-209ENST00000553949 CYP3A4P08684 503 aa13.95□□□□□ -0.18
SHMT2-209ENST00000553949 USP11P51784 963 aa13.95□□□□□ -0.18
SHMT2-209ENST00000553949 TRIM32Q13049 653 aa13.95□□□□□ -0.18
SHMT2-209ENST00000553949 PKP1Q13835 747 aa13.95□□□□□ -0.18
SHMT2-209ENST00000553949 PRAMEF19Q5SWL8 479 aa13.95□□□□□ -0.18
SHMT2-209ENST00000553949 EEPD1Q7L9B9 569 aa13.95□□□□□ -0.18
SHMT2-209ENST00000553949 FBXO16Q8IX29 292 aaPredicted RBP13.95□□□□□ -0.18
SHMT2-209ENST00000553949 SH3TC2Q8TF17 1288 aa13.95□□□□□ -0.18
SHMT2-209ENST00000553949 ZFP91Q96JP5 570 aaPredicted RBP13.95□□□□□ -0.18
SHMT2-209ENST00000553949 IPO9Q96P70 1041 aaKnown RBP13.95□□□□□ -0.18
SHMT2-209ENST00000553949 KATNBL1Q9H079 304 aa13.95□□□□□ -0.18
SHMT2-209ENST00000553949 ABHD16BQ9H3Z7 469 aa13.95□□□□□ -0.18
SHMT2-209ENST00000553949 NRBP1Q9UHY1 535 aa13.95□□□□□ -0.18
SHMT2-209ENST00000553949 CNPY2Q9Y2B0 182 aa13.95□□□□□ -0.18
SHMT2-209ENST00000553949 PRKAR2AP13861 404 aaKnown RBP13.94□□□□□ -0.18
SHMT2-209ENST00000553949 DDIT3P35638 169 aa13.94□□□□□ -0.18
SHMT2-209ENST00000553949 ZNF76P36508 570 aa13.94□□□□□ -0.18
SHMT2-209ENST00000553949 ACVR2BQ13705 512 aa13.94□□□□□ -0.18
SHMT2-209ENST00000553949 SLC9C1Q4G0N8 1177 aa13.94□□□□□ -0.18
SHMT2-209ENST00000553949 MAP3K21Q5TCX8 1036 aa13.94□□□□□ -0.18
SHMT2-209ENST00000553949 NEK8Q86SG6 692 aa13.94□□□□□ -0.18
SHMT2-209ENST00000553949 FERMT3Q86UX7 667 aa13.94□□□□□ -0.18
SHMT2-209ENST00000553949 VTA1Q9NP79 307 aa13.94□□□□□ -0.18
SHMT2-209ENST00000553949 RTEL1Q9NZ71 1219 aa13.94□□□□□ -0.18
SHMT2-209ENST00000553949 ZHX1Q9UKY1 873 aaPredicted RBP13.94□□□□□ -0.18
SHMT2-209ENST00000553949 ZNFX1Q9P2E3 1918 aaKnown RBP13.94□□□□□ -0.18
SHMT2-209ENST00000553949 FAM86B1E9PN63 330 aa13.93□□□□□ -0.18
SHMT2-209ENST00000553949 RGS20O76081 388 aa13.93□□□□□ -0.18
SHMT2-209ENST00000553949 FAM86B2P0C5J1 330 aa13.93□□□□□ -0.18
SHMT2-209ENST00000553949 ZNF865P0CJ78 1059 aaPredicted RBP13.93□□□□□ -0.18
SHMT2-209ENST00000553949 ZSCAN22P10073 491 aaPredicted RBP13.93□□□□□ -0.18
SHMT2-209ENST00000553949 CYBAP13498 195 aa13.93□□□□□ -0.18
SHMT2-209ENST00000553949 ITGB5P18084 799 aa13.93□□□□□ -0.18
SHMT2-209ENST00000553949 CIITAP33076 1130 aa13.93□□□□□ -0.18
SHMT2-209ENST00000553949 CACNB2Q08289 660 aaPredicted RBP13.93□□□□□ -0.18
SHMT2-209ENST00000553949 RESTQ13127 1097 aa13.93□□□□□ -0.18
SHMT2-209ENST00000553949 LETM2Q2VYF4 491 aa13.93□□□□□ -0.18
SHMT2-209ENST00000553949 CEP55Q53EZ4 464 aa13.93□□□□□ -0.18
SHMT2-209ENST00000553949 SEPT14Q6ZU15 432 aa13.93□□□□□ -0.18
SHMT2-209ENST00000553949 BRAPQ7Z569 592 aa13.93□□□□□ -0.18
SHMT2-209ENST00000553949 TRPV1Q8NER1 839 aa13.93□□□□□ -0.18
SHMT2-209ENST00000553949 CYP2W1Q8TAV3 490 aa13.93□□□□□ -0.18
SHMT2-209ENST00000553949 INPP4AQ96PE3 977 aaPredicted RBP13.93□□□□□ -0.18
SHMT2-209ENST00000553949 MXRA8Q9BRK3 442 aa13.93□□□□□ -0.18
SHMT2-209ENST00000553949 JADE2Q9NQC1 790 aa13.93□□□□□ -0.18
SHMT2-209ENST00000553949 UBIAD1Q9Y5Z9 338 aa13.93□□□□□ -0.18
SHMT2-209ENST00000553949 CYP3A7-CYP3A51PA0A087WV96 503 aa13.92□□□□□ -0.18
SHMT2-209ENST00000553949 TDP2O95551 362 aa13.92□□□□□ -0.18
SHMT2-209ENST00000553949 CYP3A7P24462 503 aa13.92□□□□□ -0.18
SHMT2-209ENST00000553949 TRAPPC10P48553 1259 aa13.92□□□□□ -0.18
SHMT2-209ENST00000553949 GNPTABQ3T906 1256 aa13.92□□□□□ -0.18
SHMT2-209ENST00000553949 FOXD4L5Q5VV16 416 aaPredicted RBP13.92□□□□□ -0.18
SHMT2-209ENST00000553949 TAPT1Q6NXT6 567 aa13.92□□□□□ -0.18
SHMT2-209ENST00000553949 MOXD1Q6UVY6 613 aa13.92□□□□□ -0.18
SHMT2-209ENST00000553949 NLRX1Q86UT6 975 aa13.92□□□□□ -0.18
SHMT2-209ENST00000553949 FOXD4L4Q8WXT5 416 aaPredicted RBP13.92□□□□□ -0.18
SHMT2-209ENST00000553949 NAP1L4Q99733 375 aaKnown RBP13.92□□□□□ -0.18
SHMT2-209ENST00000553949 WDR11Q9BZH6 1224 aa13.92□□□□□ -0.18
SHMT2-209ENST00000553949 MCOLN1Q9GZU1 580 aa13.92□□□□□ -0.18
SHMT2-209ENST00000553949 PDGFCQ9NRA1 345 aa13.92□□□□□ -0.18
SHMT2-209ENST00000553949 NOL7Q9UMY1 257 aaKnown RBP13.92□□□□□ -0.18
SHMT2-209ENST00000553949 PLXNA1Q9UIW2 1896 aa13.92□□□□□ -0.18
SHMT2-209ENST00000553949 IGLV3-22A0A075B6J6 115 aa13.91□□□□□ -0.18
SHMT2-209ENST00000553949 RBM47A0AV96 593 aaKnown RBP13.91□□□□□ -0.18
SHMT2-209ENST00000553949 MEIS1O00470 390 aa13.91□□□□□ -0.18
SHMT2-209ENST00000553949 WNT7AO00755 349 aa13.91□□□□□ -0.18
SHMT2-209ENST00000553949 CCNT1O60563 726 aaKnown RBP13.91□□□□□ -0.18
SHMT2-209ENST00000553949 BRD1O95696 1058 aa13.91□□□□□ -0.18
SHMT2-209ENST00000553949 ATP2B1P20020 1258 aa13.91□□□□□ -0.18
SHMT2-209ENST00000553949 CCND3P30281 292 aaPredicted RBP13.91□□□□□ -0.18
SHMT2-209ENST00000553949 ICAM3P32942 547 aa13.91□□□□□ -0.18
SHMT2-209ENST00000553949 ADCYAP1R1P41586 468 aa13.91□□□□□ -0.18
SHMT2-209ENST00000553949 TOB1P50616 345 aaPredicted RBP13.91□□□□□ -0.18
SHMT2-209ENST00000553949 MTMR1Q13613 665 aa13.91□□□□□ -0.18
SHMT2-209ENST00000553949 CCDC144BQ3MJ40 725 aa13.91□□□□□ -0.18
SHMT2-209ENST00000553949 PRR16Q569H4 304 aa13.91□□□□□ -0.18
SHMT2-209ENST00000553949 PPP4R3AQ6IN85 833 aa13.91□□□□□ -0.18
SHMT2-209ENST00000553949 NIPA1Q7RTP0 329 aa13.91□□□□□ -0.18
SHMT2-209ENST00000553949 SCFD2Q8WU76 684 aa13.91□□□□□ -0.18
SHMT2-209ENST00000553949 ARMC5Q96C12 935 aa13.91□□□□□ -0.18
SHMT2-209ENST00000553949 GPRASP2Q96D09 838 aa13.91□□□□□ -0.18
SHMT2-209ENST00000553949 MBOAT7Q96N66 472 aa13.91□□□□□ -0.18
SHMT2-209ENST00000553949 ZSCAN16Q9H4T2 348 aaPredicted RBP13.91□□□□□ -0.18
SHMT2-209ENST00000553949 ZDHHC9Q9Y397 364 aa13.91□□□□□ -0.18
SHMT2-209ENST00000553949 SPATA31C2B4DYI2 1134 aa13.9□□□□□ -0.18
SHMT2-209ENST00000553949 SEPT4O43236 478 aa13.9□□□□□ -0.18
SHMT2-209ENST00000553949 FIBPO43427 364 aa13.9□□□□□ -0.18
SHMT2-209ENST00000553949 F13A1P00488 732 aa13.9□□□□□ -0.18
SHMT2-209ENST00000553949 GCFC2P16383 781 aaKnown RBP13.9□□□□□ -0.18
SHMT2-209ENST00000553949 CNGA1P29973 690 aa13.9□□□□□ -0.18
SHMT2-209ENST00000553949 SETQ01105 290 aaPredicted RBP13.9□□□□□ -0.18
SHMT2-209ENST00000553949 SEMA3FQ13275 785 aa13.9□□□□□ -0.18
SHMT2-209ENST00000553949 TTLL4Q14679 1199 aa13.9□□□□□ -0.18
SHMT2-209ENST00000553949 Q4G0T1 1027 aa13.9□□□□□ -0.18
SHMT2-209ENST00000553949 RILPL1Q5EBL4 403 aa13.9□□□□□ -0.18
SHMT2-209ENST00000553949 TTC38Q5R3I4 469 aa13.9□□□□□ -0.18
SHMT2-209ENST00000553949 MYSM1Q5VVJ2 828 aa13.9□□□□□ -0.18
SHMT2-209ENST00000553949 IQSEC1Q6DN90 963 aa13.9□□□□□ -0.18
SHMT2-209ENST00000553949 CCDC62Q6P9F0 684 aa13.9□□□□□ -0.18
SHMT2-209ENST00000553949 KCNV1Q6PIU1 500 aa13.9□□□□□ -0.18
Retrieved 100 of 20,778 RNA–protein pairs in 15.3 ms