RNA–Protein interactions for RNA: ENST00000547486.1

CPSF6-204, Transcript of cleavage and polyadenylation specific factor 6, humanhuman

TSL 2

Gene CPSF6, Length 872 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CPSF6-204ENST00000547486 ZFP91Q96JP5 570 aaPredicted RBP15.5■□□□□ 0.07
CPSF6-204ENST00000547486 CTAGE1Q96RT6 745 aa15.5■□□□□ 0.07
CPSF6-204ENST00000547486 PDCD2LQ9BRP1 358 aa15.5■□□□□ 0.07
CPSF6-204ENST00000547486 LSG1Q9H089 658 aaKnown RBP15.5■□□□□ 0.07
CPSF6-204ENST00000547486 PRUNE2Q8WUY3 3088 aa15.49■□□□□ 0.07
CPSF6-204ENST00000547486 PNMA6FA0A0J9YX94 578 aa15.49■□□□□ 0.07
CPSF6-204ENST00000547486 MYCLP12524 364 aaPredicted RBP15.49■□□□□ 0.07
CPSF6-204ENST00000547486 VSIG10LQ86VR7 867 aa15.49■□□□□ 0.07
CPSF6-204ENST00000547486 PHF6Q8IWS0 365 aaKnown RBP eCLIP15.49■□□□□ 0.07
CPSF6-204ENST00000547486 MAFAQ8NHW3 353 aaPredicted RBP15.49■□□□□ 0.07
CPSF6-204ENST00000547486 PIBF1Q8WXW3 757 aa15.49■□□□□ 0.07
CPSF6-204ENST00000547486 MYL10Q9BUA6 226 aa15.49■□□□□ 0.07
CPSF6-204ENST00000547486 LY9Q9HBG7 655 aa15.49■□□□□ 0.07
CPSF6-204ENST00000547486 MAP3K20Q9NYL2 800 aaKnown RBP15.49■□□□□ 0.07
CPSF6-204ENST00000547486 RBAK-RBAKDNI3L0D1 243 aa15.48■□□□□ 0.07
CPSF6-204ENST00000547486 FOSL2P15408 326 aa15.48■□□□□ 0.07
CPSF6-204ENST00000547486 SP2Q02086 613 aa15.48■□□□□ 0.07
CPSF6-204ENST00000547486 PTPN11Q06124 597 aaPredicted RBP15.48■□□□□ 0.07
CPSF6-204ENST00000547486 SART3Q15020 963 aaKnown RBP15.48■□□□□ 0.07
CPSF6-204ENST00000547486 PGM5Q15124 567 aa15.48■□□□□ 0.07
CPSF6-204ENST00000547486 DEFB128Q7Z7B8 93 aa15.48■□□□□ 0.07
CPSF6-204ENST00000547486 CATIPQ7Z7H3 387 aa15.48■□□□□ 0.07
CPSF6-204ENST00000547486 FCHSD1Q86WN1 690 aa15.48■□□□□ 0.07
CPSF6-204ENST00000547486 RPUSD2Q8IZ73 545 aaKnown RBP15.48■□□□□ 0.07
CPSF6-204ENST00000547486 ESYT1Q9BSJ8 1104 aa15.48■□□□□ 0.07
CPSF6-204ENST00000547486 MRVI1Q9Y6F6 885 aa15.48■□□□□ 0.07
CPSF6-204ENST00000547486 GCOM1H8Y6P7 765 aaPredicted RBP15.47■□□□□ 0.07
CPSF6-204ENST00000547486 PRC1O43663 620 aa15.47■□□□□ 0.07
CPSF6-204ENST00000547486 SORBS3O60504 671 aa15.47■□□□□ 0.07
CPSF6-204ENST00000547486 IQCF3P0C7M6 154 aa15.47■□□□□ 0.07
CPSF6-204ENST00000547486 POLR2MP0CAP2 368 aa15.47■□□□□ 0.07
CPSF6-204ENST00000547486 CASTP20810 708 aaKnown RBP15.47■□□□□ 0.07
CPSF6-204ENST00000547486 RABGGTBP53611 331 aa15.47■□□□□ 0.07
CPSF6-204ENST00000547486 GDF6Q6KF10 455 aaPredicted RBP15.47■□□□□ 0.07
CPSF6-204ENST00000547486 ZNF654Q8IZM8 581 aa15.47■□□□□ 0.07
CPSF6-204ENST00000547486 SAMD3Q8N6K7 520 aa15.47■□□□□ 0.07
CPSF6-204ENST00000547486 GPKOWQ92917 476 aaPredicted RBP eCLIP15.47■□□□□ 0.07
CPSF6-204ENST00000547486 EMID1Q96A84 441 aaPredicted RBP15.47■□□□□ 0.07
CPSF6-204ENST00000547486 BCAS3Q9H6U6 928 aa15.47■□□□□ 0.07
CPSF6-204ENST00000547486 YBX2Q9Y2T7 364 aaKnown RBP15.47■□□□□ 0.07
CPSF6-204ENST00000547486 SLC27A2O14975 620 aa15.46■□□□□ 0.07
CPSF6-204ENST00000547486 MYOGP15173 224 aa15.46■□□□□ 0.07
CPSF6-204ENST00000547486 LAMC2Q13753 1193 aa15.46■□□□□ 0.07
CPSF6-204ENST00000547486 NECTIN1Q15223 517 aa15.46■□□□□ 0.07
CPSF6-204ENST00000547486 PTGISQ16647 500 aa15.46■□□□□ 0.07
CPSF6-204ENST00000547486 DGKDQ16760 1214 aa15.46■□□□□ 0.07
CPSF6-204ENST00000547486 MYSM1Q5VVJ2 828 aa15.46■□□□□ 0.07
CPSF6-204ENST00000547486 SESTD1Q86VW0 696 aa15.46■□□□□ 0.07
CPSF6-204ENST00000547486 DHX37Q8IY37 1157 aaKnown RBP15.46■□□□□ 0.07
CPSF6-204ENST00000547486 MTIF3Q9H2K0 278 aaKnown RBP15.46■□□□□ 0.07
CPSF6-204ENST00000547486 NKX2-4Q9H2Z4 354 aa15.46■□□□□ 0.07
CPSF6-204ENST00000547486 SLC4A7Q9Y6M7 1214 aa15.46■□□□□ 0.07
CPSF6-204ENST00000547486 SCN10AQ9Y5Y9 1956 aa15.45■□□□□ 0.06
CPSF6-204ENST00000547486 CHD9Q3L8U1 2897 aa15.45■□□□□ 0.06
CPSF6-204ENST00000547486 PITPNM1O00562 1244 aa15.45■□□□□ 0.06
CPSF6-204ENST00000547486 SH2B2O14492 632 aaPredicted RBP15.45■□□□□ 0.06
CPSF6-204ENST00000547486 MRPS9P82933 396 aaKnown RBP15.45■□□□□ 0.06
CPSF6-204ENST00000547486 GPNMBQ14956 572 aa15.45■□□□□ 0.06
CPSF6-204ENST00000547486 HSDL1Q3SXM5 330 aa15.45■□□□□ 0.06
CPSF6-204ENST00000547486 CELF3Q5SZQ8 465 aaKnown RBP15.45■□□□□ 0.06
CPSF6-204ENST00000547486 CREB3L3Q68CJ9 461 aa15.45■□□□□ 0.06
CPSF6-204ENST00000547486 SRBD1Q8N5C6 995 aaKnown RBP15.45■□□□□ 0.06
CPSF6-204ENST00000547486 RETREG2Q8NC44 543 aa15.45■□□□□ 0.06
CPSF6-204ENST00000547486 PPTC7Q8NI37 304 aa15.45■□□□□ 0.06
CPSF6-204ENST00000547486 DHX38Q92620 1227 aaKnown RBP15.45■□□□□ 0.06
CPSF6-204ENST00000547486 MAP3K14Q99558 947 aa15.45■□□□□ 0.06
CPSF6-204ENST00000547486 ALG1Q9BT22 464 aa15.45■□□□□ 0.06
CPSF6-204ENST00000547486 PRDM12Q9H4Q4 367 aa15.45■□□□□ 0.06
CPSF6-204ENST00000547486 HDAC6Q9UBN7 1215 aa15.45■□□□□ 0.06
CPSF6-204ENST00000547486 MSRAQ9UJ68 235 aa15.45■□□□□ 0.06
CPSF6-204ENST00000547486 ZBBXA8MT70 800 aa15.44■□□□□ 0.06
CPSF6-204ENST00000547486 HAS3O00219 553 aa15.44■□□□□ 0.06
CPSF6-204ENST00000547486 DDAH1O94760 285 aa15.44■□□□□ 0.06
CPSF6-204ENST00000547486 PLEKHA8P1O95397 391 aa15.44■□□□□ 0.06
CPSF6-204ENST00000547486 PFKMP08237 780 aa15.44■□□□□ 0.06
CPSF6-204ENST00000547486 ZNF286BP0CG31 522 aa15.44■□□□□ 0.06
CPSF6-204ENST00000547486 MCM5P33992 734 aa15.44■□□□□ 0.06
CPSF6-204ENST00000547486 PSEN2P49810 448 aa15.44■□□□□ 0.06
CPSF6-204ENST00000547486 TRAF1Q13077 416 aa15.44■□□□□ 0.06
CPSF6-204ENST00000547486 HIC1Q14526 733 aa15.44■□□□□ 0.06
CPSF6-204ENST00000547486 RAB30Q15771 203 aa15.44■□□□□ 0.06
CPSF6-204ENST00000547486 CASC1Q6TDU7 716 aa15.44■□□□□ 0.06
CPSF6-204ENST00000547486 CMTR1Q8N1G2 835 aaKnown RBP15.44■□□□□ 0.06
CPSF6-204ENST00000547486 USP38Q8NB14 1042 aa15.44■□□□□ 0.06
CPSF6-204ENST00000547486 MTA3Q9BTC8 594 aa15.44■□□□□ 0.06
CPSF6-204ENST00000547486 SPZ1Q9BXG8 430 aa15.44■□□□□ 0.06
CPSF6-204ENST00000547486 COL25A1Q9BXS0 654 aaPredicted RBP15.44■□□□□ 0.06
CPSF6-204ENST00000547486 GTF2IRD1Q9UHL9 959 aa15.44■□□□□ 0.06
CPSF6-204ENST00000547486 NOD1Q9Y239 953 aa15.44■□□□□ 0.06
CPSF6-204ENST00000547486 PPFIA4O75335 1185 aa15.43■□□□□ 0.06
CPSF6-204ENST00000547486 GGPS1O95749 300 aa15.43■□□□□ 0.06
CPSF6-204ENST00000547486 F2P00734 622 aa15.43■□□□□ 0.06
CPSF6-204ENST00000547486 HOXD8P13378 290 aaPredicted RBP15.43■□□□□ 0.06
CPSF6-204ENST00000547486 ATP2A2P16615 1042 aaKnown RBP15.43■□□□□ 0.06
CPSF6-204ENST00000547486 RXRAP19793 462 aa15.43■□□□□ 0.06
CPSF6-204ENST00000547486 UBA1P22314 1058 aaKnown RBP15.43■□□□□ 0.06
CPSF6-204ENST00000547486 SMARCA1P28370 1054 aa15.43■□□□□ 0.06
CPSF6-204ENST00000547486 CCND2P30279 289 aa15.43■□□□□ 0.06
CPSF6-204ENST00000547486 RFC2P35250 354 aa15.43■□□□□ 0.06
CPSF6-204ENST00000547486 ZNF200P98182 395 aaPredicted RBP15.43■□□□□ 0.06
Retrieved 100 of 20,778 RNA–protein pairs in 26.5 ms