RNA–Protein interactions for RNA: ENST00000546744.5

PTCH1-212, Transcript of patched 1, humanhuman

TSL 2

Gene PTCH1, Length 4,389 nt, Biotype retained intron, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
PTCH1-212ENST00000546744 PLAAQ9Y263 795 aa13.92□□□□□ -0.18
PTCH1-212ENST00000546744 BTBD18B2RXH4 712 aa13.91□□□□□ -0.18
PTCH1-212ENST00000546744 IFNAR1P17181 557 aa13.91□□□□□ -0.18
PTCH1-212ENST00000546744 CCND1P24385 295 aa13.91□□□□□ -0.18
PTCH1-212ENST00000546744 ASPHQ12797 758 aa13.91□□□□□ -0.18
PTCH1-212ENST00000546744 SDCCAG3Q96C92 435 aa13.91□□□□□ -0.18
PTCH1-212ENST00000546744 AATFQ9NY61 560 aaKnown RBP eCLIP13.91□□□□□ -0.18
PTCH1-212ENST00000546744 KIF20BQ96Q89 1820 aa13.91□□□□□ -0.18
PTCH1-212ENST00000546744 SPARCL1Q14515 664 aa13.91□□□□□ -0.18
PTCH1-212ENST00000546744 UBE3CQ15386 1083 aa13.91□□□□□ -0.18
PTCH1-212ENST00000546744 EXOC3L4Q17RC7 722 aa13.91□□□□□ -0.18
PTCH1-212ENST00000546744 CCDC144BQ3MJ40 725 aa13.91□□□□□ -0.18
PTCH1-212ENST00000546744 ZMYM1Q5SVZ6 1142 aa13.91□□□□□ -0.18
PTCH1-212ENST00000546744 FMR1NBQ8N0W7 255 aaPredicted RBP13.91□□□□□ -0.18
PTCH1-212ENST00000546744 RPGRQ92834 1020 aaKnown RBP13.91□□□□□ -0.18
PTCH1-212ENST00000546744 TEKT1Q969V4 418 aa13.91□□□□□ -0.18
PTCH1-212ENST00000546744 SLITRK6Q9H5Y7 841 aa13.91□□□□□ -0.18
PTCH1-212ENST00000546744 ZCCHC17Q9NP64 241 aaKnown RBP13.91□□□□□ -0.18
PTCH1-212ENST00000546744 ATP8A2Q9NTI2 1148 aa13.91□□□□□ -0.18
PTCH1-212ENST00000546744 PCDHA13Q9Y5I0 950 aa13.91□□□□□ -0.18
PTCH1-212ENST00000546744 H2AFXP16104 143 aaPredicted RBP13.91□□□□□ -0.18
PTCH1-212ENST00000546744 NUGGCQ68CJ6 796 aa13.91□□□□□ -0.18
PTCH1-212ENST00000546744 NCAPH2Q6IBW4 605 aa13.91□□□□□ -0.18
PTCH1-212ENST00000546744 ZNF804AQ7Z570 1209 aa13.91□□□□□ -0.18
PTCH1-212ENST00000546744 GNL3Q9BVP2 549 aaKnown RBP eCLIP13.91□□□□□ -0.18
PTCH1-212ENST00000546744 ZDHHC9Q9Y397 364 aa13.91□□□□□ -0.18
PTCH1-212ENST00000546744 KNDC1Q76NI1 1749 aa13.9□□□□□ -0.18
PTCH1-212ENST00000546744 SPAG7O75391 227 aa13.9□□□□□ -0.18
PTCH1-212ENST00000546744 KIF11P52732 1056 aa13.9□□□□□ -0.18
PTCH1-212ENST00000546744 SUGP1Q8IWZ8 645 aaKnown RBP13.9□□□□□ -0.18
PTCH1-212ENST00000546744 CHAMP1Q96JM3 812 aa13.9□□□□□ -0.18
PTCH1-212ENST00000546744 FGD4Q96M96 766 aa13.9□□□□□ -0.18
PTCH1-212ENST00000546744 MTA3Q9BTC8 594 aa13.9□□□□□ -0.18
PTCH1-212ENST00000546744 PHF23Q9BUL5 403 aaPredicted RBP13.9□□□□□ -0.18
PTCH1-212ENST00000546744 ABHD10Q9NUJ1 306 aa13.9□□□□□ -0.18
PTCH1-212ENST00000546744 A0A1W2PQC6 194 aa13.9□□□□□ -0.18
PTCH1-212ENST00000546744 FMNL1O95466 1100 aaPredicted RBP13.9□□□□□ -0.18
PTCH1-212ENST00000546744 TTC4O95801 387 aa13.9□□□□□ -0.18
PTCH1-212ENST00000546744 PSMD6Q15008 389 aa13.9□□□□□ -0.18
PTCH1-212ENST00000546744 HADHQ16836 314 aaKnown RBP13.9□□□□□ -0.18
PTCH1-212ENST00000546744 CDKL2Q92772 493 aa13.9□□□□□ -0.18
PTCH1-212ENST00000546744 SATB2Q9UPW6 733 aa13.9□□□□□ -0.18
PTCH1-212ENST00000546744 ARHGEF35A5YM69 484 aa13.9□□□□□ -0.18
PTCH1-212ENST00000546744 HSPA8P11142 646 aaKnown RBP13.9□□□□□ -0.18
PTCH1-212ENST00000546744 SCG2P13521 617 aa13.9□□□□□ -0.18
PTCH1-212ENST00000546744 CCZ1BP86790 482 aa13.9□□□□□ -0.18
PTCH1-212ENST00000546744 CCZ1P86791 482 aaPredicted RBP13.9□□□□□ -0.18
PTCH1-212ENST00000546744 KLC1Q07866 573 aa13.9□□□□□ -0.18
PTCH1-212ENST00000546744 PPP4R3CPQ6ZMV5 832 aa13.9□□□□□ -0.18
PTCH1-212ENST00000546744 RSAD2Q8WXG1 361 aa13.9□□□□□ -0.18
PTCH1-212ENST00000546744 MRPL40Q9NQ50 206 aaKnown RBP13.9□□□□□ -0.18
PTCH1-212ENST00000546744 USP40Q9NVE5 1235 aa13.9□□□□□ -0.18
PTCH1-212ENST00000546744 CD2APQ9Y5K6 639 aa13.9□□□□□ -0.18
PTCH1-212ENST00000546744 C1orf167Q5SNV9 1468 aa13.9□□□□□ -0.19
PTCH1-212ENST00000546744 LMTK3Q96Q04 1460 aa13.9□□□□□ -0.19
PTCH1-212ENST00000546744 LGALS16A8MUM7 142 aa13.9□□□□□ -0.19
PTCH1-212ENST00000546744 IRS4O14654 1257 aaPredicted RBP13.9□□□□□ -0.19
PTCH1-212ENST00000546744 RESP18Q5W5W9 173 aa13.9□□□□□ -0.19
PTCH1-212ENST00000546744 SGSM3Q96HU1 749 aa13.9□□□□□ -0.19
PTCH1-212ENST00000546744 PITPNM3Q9BZ71 974 aa13.9□□□□□ -0.19
PTCH1-212ENST00000546744 VPS54Q9P1Q0 977 aa13.9□□□□□ -0.19
PTCH1-212ENST00000546744 ZBTB12Q9Y330 459 aaPredicted RBP13.9□□□□□ -0.19
PTCH1-212ENST00000546744 LRRC7Q96NW7 1537 aa13.89□□□□□ -0.19
PTCH1-212ENST00000546744 MROH5Q6ZUA9 1318 aa13.89□□□□□ -0.19
PTCH1-212ENST00000546744 INHBAP08476 426 aa13.89□□□□□ -0.19
PTCH1-212ENST00000546744 CYP21A2P08686 494 aa13.89□□□□□ -0.19
PTCH1-212ENST00000546744 ADD1P35611 737 aaKnown RBP13.89□□□□□ -0.19
PTCH1-212ENST00000546744 GARSP41250 739 aaKnown RBP13.89□□□□□ -0.19
PTCH1-212ENST00000546744 RCAN1P53805 252 aa13.89□□□□□ -0.19
PTCH1-212ENST00000546744 PTGDRQ13258 359 aa13.89□□□□□ -0.19
PTCH1-212ENST00000546744 APOA5Q6Q788 366 aa13.89□□□□□ -0.19
PTCH1-212ENST00000546744 CTAGE3PQ8IX95 158 aa13.89□□□□□ -0.19
PTCH1-212ENST00000546744 RHOT2Q8IXI1 618 aa13.89□□□□□ -0.19
PTCH1-212ENST00000546744 KIFC2Q96AC6 838 aa13.89□□□□□ -0.19
PTCH1-212ENST00000546744 ELAC2Q9BQ52 826 aaKnown RBP13.89□□□□□ -0.19
PTCH1-212ENST00000546744 PRDM4Q9UKN5 801 aa13.89□□□□□ -0.19
PTCH1-212ENST00000546744 NFU1Q9UMS0 254 aa13.89□□□□□ -0.19
PTCH1-212ENST00000546744 COL4A3BPQ9Y5P4 624 aa13.89□□□□□ -0.19
PTCH1-212ENST00000546744 SIPA1L2Q9P2F8 1722 aaPredicted RBP13.89□□□□□ -0.19
PTCH1-212ENST00000546744 FAM187AA6NFU0 413 aa13.89□□□□□ -0.19
PTCH1-212ENST00000546744 SPECC1L-ADORA2AF8WAN1 911 aa13.89□□□□□ -0.19
PTCH1-212ENST00000546744 ZMYND10O75800 440 aa13.89□□□□□ -0.19
PTCH1-212ENST00000546744 PLTPP55058 493 aa13.89□□□□□ -0.19
PTCH1-212ENST00000546744 TCP11X2Q5H9J9 407 aa13.89□□□□□ -0.19
PTCH1-212ENST00000546744 KRT80Q6KB66 452 aa13.89□□□□□ -0.19
PTCH1-212ENST00000546744 MB21D1Q8N884 522 aa13.89□□□□□ -0.19
PTCH1-212ENST00000546744 ABTB1Q969K4 478 aaPredicted RBP13.89□□□□□ -0.19
PTCH1-212ENST00000546744 CLIC6Q96NY7 704 aa13.89□□□□□ -0.19
PTCH1-212ENST00000546744 KCNF1Q9H3M0 494 aa13.89□□□□□ -0.19
PTCH1-212ENST00000546744 TAF1DQ9H5J8 278 aaPredicted RBP13.89□□□□□ -0.19
PTCH1-212ENST00000546744 SYNGAP1Q96PV0 1343 aa13.89□□□□□ -0.19
PTCH1-212ENST00000546744 KDM4FA0A1W2PPD8 638 aa13.89□□□□□ -0.19
PTCH1-212ENST00000546744 E7ENQ6 273 aa13.89□□□□□ -0.19
PTCH1-212ENST00000546744 ATP1A3P13637 1013 aa13.89□□□□□ -0.19
PTCH1-212ENST00000546744 LIFRP42702 1097 aa13.89□□□□□ -0.19
PTCH1-212ENST00000546744 BYSLQ13895 437 aaKnown RBP13.89□□□□□ -0.19
PTCH1-212ENST00000546744 PARP10Q53GL7 1025 aa13.89□□□□□ -0.19
PTCH1-212ENST00000546744 ATG16L1Q676U5 607 aa13.89□□□□□ -0.19
PTCH1-212ENST00000546744 SYT2Q8N9I0 419 aaPredicted RBP13.89□□□□□ -0.19
PTCH1-212ENST00000546744 NDUFA13Q9P0J0 144 aa13.89□□□□□ -0.19
Retrieved 100 of 20,778 RNA–protein pairs in 25.4 ms