RNA–Protein interactions for RNA: ENST00000543552.5

RTN3-213, Transcript of reticulon 3, humanhuman

TSL 4

Gene RTN3, Length 529 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Endoplasmic reticulum, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
RTN3-213ENST00000543552 GAS2L1Q99501 681 aaPredicted RBP15.22■□□□□ 0.03
RTN3-213ENST00000543552 KATNAL1Q9BW62 490 aa15.22■□□□□ 0.03
RTN3-213ENST00000543552 KIAA1217Q5T5P2 1943 aa15.21■□□□□ 0.03
RTN3-213ENST00000543552 ZBBXA8MT70 800 aa15.21■□□□□ 0.03
RTN3-213ENST00000543552 GCOM1H8Y6P7 765 aaPredicted RBP15.21■□□□□ 0.03
RTN3-213ENST00000543552 POLR2MP0CAP2 368 aa15.21■□□□□ 0.03
RTN3-213ENST00000543552 KIF5BP33176 963 aa15.21■□□□□ 0.03
RTN3-213ENST00000543552 CHMP4BP1P59074 171 aa15.21■□□□□ 0.03
RTN3-213ENST00000543552 GRIN2CQ14957 1233 aa15.21■□□□□ 0.03
RTN3-213ENST00000543552 CASC1Q6TDU7 716 aa15.21■□□□□ 0.03
RTN3-213ENST00000543552 STOX1Q6ZVD7 989 aa15.21■□□□□ 0.03
RTN3-213ENST00000543552 CHST3Q7LGC8 479 aa15.21■□□□□ 0.03
RTN3-213ENST00000543552 SESTD1Q86VW0 696 aa15.21■□□□□ 0.03
RTN3-213ENST00000543552 MAP4K1Q92918 833 aa15.21■□□□□ 0.03
RTN3-213ENST00000543552 SCLYQ96I15 445 aa15.21■□□□□ 0.03
RTN3-213ENST00000543552 MTA3Q9BTC8 594 aa15.21■□□□□ 0.03
RTN3-213ENST00000543552 RIOX1Q9H6W3 641 aa15.21■□□□□ 0.03
RTN3-213ENST00000543552 VCANP13611 3396 aa15.21■□□□□ 0.03
RTN3-213ENST00000543552 CHD9Q3L8U1 2897 aa15.21■□□□□ 0.02
RTN3-213ENST00000543552 PNMA6FA0A0J9YX94 578 aa15.2■□□□□ 0.02
RTN3-213ENST00000543552 OPLAHO14841 1288 aa15.2■□□□□ 0.02
RTN3-213ENST00000543552 CCND2P30279 289 aa15.2■□□□□ 0.02
RTN3-213ENST00000543552 TROAPQ12815 778 aa15.2■□□□□ 0.02
RTN3-213ENST00000543552 PTGISQ16647 500 aa15.2■□□□□ 0.02
RTN3-213ENST00000543552 DHX37Q8IY37 1157 aaKnown RBP15.2■□□□□ 0.02
RTN3-213ENST00000543552 PPTC7Q8NI37 304 aa15.2■□□□□ 0.02
RTN3-213ENST00000543552 CTCFLQ8NI51 663 aaPredicted RBP15.2■□□□□ 0.02
RTN3-213ENST00000543552 CAGE1Q8TC20 777 aa15.2■□□□□ 0.02
RTN3-213ENST00000543552 PIGSQ96S52 555 aa15.2■□□□□ 0.02
RTN3-213ENST00000543552 MAP3K14Q99558 947 aa15.2■□□□□ 0.02
RTN3-213ENST00000543552 PDCD2LQ9BRP1 358 aa15.2■□□□□ 0.02
RTN3-213ENST00000543552 SLC28A3Q9HAS3 691 aa15.2■□□□□ 0.02
RTN3-213ENST00000543552 CXXC1Q9P0U4 656 aaPredicted RBP15.2■□□□□ 0.02
RTN3-213ENST00000543552 DDX41Q9UJV9 622 aaKnown RBP15.2■□□□□ 0.02
RTN3-213ENST00000543552 RBM8AQ9Y5S9 174 aaKnown RBP15.2■□□□□ 0.02
RTN3-213ENST00000543552 GRXCR1A8MXD5 290 aa15.19■□□□□ 0.02
RTN3-213ENST00000543552 PPP1R11O60927 126 aaPredicted RBP15.19■□□□□ 0.02
RTN3-213ENST00000543552 DDAH1O94760 285 aa15.19■□□□□ 0.02
RTN3-213ENST00000543552 PARNO95453 639 aaKnown RBP15.19■□□□□ 0.02
RTN3-213ENST00000543552 TGFB3P10600 412 aa15.19■□□□□ 0.02
RTN3-213ENST00000543552 MYCLP12524 364 aaPredicted RBP15.19■□□□□ 0.02
RTN3-213ENST00000543552 PBX2P40425 430 aa15.19■□□□□ 0.02
RTN3-213ENST00000543552 TMTC2Q8N394 836 aa15.19■□□□□ 0.02
RTN3-213ENST00000543552 C7orf31Q8N865 590 aa15.19■□□□□ 0.02
RTN3-213ENST00000543552 AFAP1L1Q8TED9 768 aa15.19■□□□□ 0.02
RTN3-213ENST00000543552 LZTS2Q9BRK4 669 aa15.19■□□□□ 0.02
RTN3-213ENST00000543552 TANC1Q9C0D5 1861 aa15.18■□□□□ 0.02
RTN3-213ENST00000543552 STAM2O75886 525 aa15.18■□□□□ 0.02
RTN3-213ENST00000543552 ATP2A2P16615 1042 aaKnown RBP15.18■□□□□ 0.02
RTN3-213ENST00000543552 HOXA13P31271 388 aaPredicted RBP15.18■□□□□ 0.02
RTN3-213ENST00000543552 MCM5P33992 734 aa15.18■□□□□ 0.02
RTN3-213ENST00000543552 GNAQP50148 359 aa15.18■□□□□ 0.02
RTN3-213ENST00000543552 PGM5Q15124 567 aa15.18■□□□□ 0.02
RTN3-213ENST00000543552 GNPTABQ3T906 1256 aa15.18■□□□□ 0.02
RTN3-213ENST00000543552 DEFB128Q7Z7B8 93 aa15.18■□□□□ 0.02
RTN3-213ENST00000543552 VSIG10LQ86VR7 867 aa15.18■□□□□ 0.02
RTN3-213ENST00000543552 MB21D2Q8IYB1 491 aaPredicted RBP15.18■□□□□ 0.02
RTN3-213ENST00000543552 RRP36Q96EU6 259 aaKnown RBP15.18■□□□□ 0.02
RTN3-213ENST00000543552 SEC63Q9UGP8 760 aaKnown RBP15.18■□□□□ 0.02
RTN3-213ENST00000543552 PCDHA11Q9Y5I1 949 aa15.18■□□□□ 0.02
RTN3-213ENST00000543552 BAIAP3O94812 1187 aa15.17■□□□□ 0.02
RTN3-213ENST00000543552 F2P00734 622 aa15.17■□□□□ 0.02
RTN3-213ENST00000543552 IQCF3P0C7M6 154 aa15.17■□□□□ 0.02
RTN3-213ENST00000543552 CALM1P0DP23 149 aa15.17■□□□□ 0.02
RTN3-213ENST00000543552 CALM2P0DP24 149 aa15.17■□□□□ 0.02
RTN3-213ENST00000543552 CALM3P0DP25 149 aa15.17■□□□□ 0.02
RTN3-213ENST00000543552 NFXL1Q6ZNB6 911 aa15.17■□□□□ 0.02
RTN3-213ENST00000543552 ZNF654Q8IZM8 581 aa15.17■□□□□ 0.02
RTN3-213ENST00000543552 IGDCC4Q8TDY8 1250 aa15.17■□□□□ 0.02
RTN3-213ENST00000543552 CUL5Q93034 780 aa15.17■□□□□ 0.02
RTN3-213ENST00000543552 TMEM87BQ96K49 555 aa15.17■□□□□ 0.02
RTN3-213ENST00000543552 SLC9A7Q96T83 725 aa15.17■□□□□ 0.02
RTN3-213ENST00000543552 SPZ1Q9BXG8 430 aa15.17■□□□□ 0.02
RTN3-213ENST00000543552 FTOQ9C0B1 505 aaKnown RBP eCLIP15.17■□□□□ 0.02
RTN3-213ENST00000543552 CCDC69A6NI79 296 aa15.16■□□□□ 0.02
RTN3-213ENST00000543552 PRC1O43663 620 aa15.16■□□□□ 0.02
RTN3-213ENST00000543552 CYTH3O43739 400 aa15.16■□□□□ 0.02
RTN3-213ENST00000543552 PPFIA4O75335 1185 aa15.16■□□□□ 0.02
RTN3-213ENST00000543552 GGPS1O95749 300 aa15.16■□□□□ 0.02
RTN3-213ENST00000543552 SMARCA1P28370 1054 aa15.16■□□□□ 0.02
RTN3-213ENST00000543552 PSEN2P49810 448 aa15.16■□□□□ 0.02
RTN3-213ENST00000543552 ANTXR2P58335 489 aa15.16■□□□□ 0.02
RTN3-213ENST00000543552 MFSD10Q14728 455 aa15.16■□□□□ 0.02
RTN3-213ENST00000543552 CELF3Q5SZQ8 465 aaKnown RBP15.16■□□□□ 0.02
RTN3-213ENST00000543552 PPP2R2DQ66LE6 453 aa15.16■□□□□ 0.02
RTN3-213ENST00000543552 FCHSD1Q86WN1 690 aa15.16■□□□□ 0.02
RTN3-213ENST00000543552 PHOSPHO2Q8TCD6 241 aa15.16■□□□□ 0.02
RTN3-213ENST00000543552 KAT2BQ92831 832 aa15.16■□□□□ 0.02
RTN3-213ENST00000543552 SPATA33Q96N06 139 aa15.16■□□□□ 0.02
RTN3-213ENST00000543552 NKX2-4Q9H2Z4 354 aa15.16■□□□□ 0.02
RTN3-213ENST00000543552 PRDM12Q9H4Q4 367 aa15.16■□□□□ 0.02
RTN3-213ENST00000543552 LY9Q9HBG7 655 aa15.16■□□□□ 0.02
RTN3-213ENST00000543552 SENP2Q9HC62 589 aa15.16■□□□□ 0.02
RTN3-213ENST00000543552 GTF2IRD1Q9UHL9 959 aa15.16■□□□□ 0.02
RTN3-213ENST00000543552 TAF6LQ9Y6J9 622 aa15.16■□□□□ 0.02
RTN3-213ENST00000543552 CHD7Q9P2D1 2997 aa15.15■□□□□ 0.02
RTN3-213ENST00000543552 ZNF286BP0CG31 522 aa15.15■□□□□ 0.02
RTN3-213ENST00000543552 HOXD8P13378 290 aaPredicted RBP15.15■□□□□ 0.02
RTN3-213ENST00000543552 SELPP16109 830 aa15.15■□□□□ 0.02
RTN3-213ENST00000543552 RBL2Q08999 1139 aa15.15■□□□□ 0.02
Retrieved 100 of 20,778 RNA–protein pairs in 19.3 ms