RNA–Protein interactions for RNA: ENST00000537408.1

CLSTN3-207, Transcript of calsyntenin 3, humanhuman

APPRIS ALT2 TSL 1 (best) BASIC

Gene CLSTN3, Length 4,296 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Endoplasmic reticulum, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLSTN3-207ENST00000537408 CCDC92Q53HC0 331 aaPredicted RBP11.94□□□□□ -0.5
CLSTN3-207ENST00000537408 IFT81Q8WYA0 676 aa11.94□□□□□ -0.5
CLSTN3-207ENST00000537408 TRAPPC9Q96Q05 1148 aa11.94□□□□□ -0.5
CLSTN3-207ENST00000537408 LRRC1Q9BTT6 524 aa11.94□□□□□ -0.5
CLSTN3-207ENST00000537408 KCNH3Q9ULD8 1083 aa11.94□□□□□ -0.5
CLSTN3-207ENST00000537408 ITIH6Q6UXX5 1313 aa11.93□□□□□ -0.5
CLSTN3-207ENST00000537408 ITGA6P23229 1130 aa11.93□□□□□ -0.5
CLSTN3-207ENST00000537408 KRT9P35527 623 aa11.93□□□□□ -0.5
CLSTN3-207ENST00000537408 SLC39A14Q15043 492 aa11.93□□□□□ -0.5
CLSTN3-207ENST00000537408 WHAMMQ8TF30 809 aa11.93□□□□□ -0.5
CLSTN3-207ENST00000537408 LRRC2Q9BYS8 371 aa11.93□□□□□ -0.5
CLSTN3-207ENST00000537408 ATXN10Q9UBB4 475 aa11.93□□□□□ -0.5
CLSTN3-207ENST00000537408 XIRP1Q702N8 1843 aaKnown RBP11.93□□□□□ -0.5
CLSTN3-207ENST00000537408 KIF20BQ96Q89 1820 aa11.93□□□□□ -0.5
CLSTN3-207ENST00000537408 TUBGCP6Q96RT7 1819 aa11.93□□□□□ -0.5
CLSTN3-207ENST00000537408 TEX33O43247 280 aa11.93□□□□□ -0.5
CLSTN3-207ENST00000537408 CAMTA2O94983 1202 aa11.93□□□□□ -0.5
CLSTN3-207ENST00000537408 SPAG1Q07617 926 aa11.93□□□□□ -0.5
CLSTN3-207ENST00000537408 KLC1Q07866 573 aa11.93□□□□□ -0.5
CLSTN3-207ENST00000537408 SUSD4Q5VX71 490 aa11.93□□□□□ -0.5
CLSTN3-207ENST00000537408 DHX32Q7L7V1 743 aaKnown RBP11.93□□□□□ -0.5
CLSTN3-207ENST00000537408 SYNE4Q8N205 404 aa11.93□□□□□ -0.5
CLSTN3-207ENST00000537408 SCOCQ9UIL1 159 aa11.93□□□□□ -0.5
CLSTN3-207ENST00000537408 MAN1B1Q9UKM7 699 aa11.93□□□□□ -0.5
CLSTN3-207ENST00000537408 RGL2O15211 777 aa11.93□□□□□ -0.5
CLSTN3-207ENST00000537408 USO1O60763 962 aaKnown RBP11.93□□□□□ -0.5
CLSTN3-207ENST00000537408 PARP1P09874 1014 aaKnown RBP11.93□□□□□ -0.5
CLSTN3-207ENST00000537408 ITGB3BPQ13352 177 aaPredicted RBP11.93□□□□□ -0.5
CLSTN3-207ENST00000537408 POSTNQ15063 836 aa11.93□□□□□ -0.5
CLSTN3-207ENST00000537408 SPATA1Q5VX52 437 aa11.93□□□□□ -0.5
CLSTN3-207ENST00000537408 ZCWPW1Q9H0M4 648 aa11.93□□□□□ -0.5
CLSTN3-207ENST00000537408 NDST4Q9H3R1 872 aa11.93□□□□□ -0.5
CLSTN3-207ENST00000537408 C5orf60A6NFR6 353 aa11.92□□□□□ -0.5
CLSTN3-207ENST00000537408 NQO1P15559 274 aaKnown RBP11.92□□□□□ -0.5
CLSTN3-207ENST00000537408 VEGFAP15692 232 aaPredicted RBP11.92□□□□□ -0.5
CLSTN3-207ENST00000537408 IL15P40933 162 aaPredicted RBP11.92□□□□□ -0.5
CLSTN3-207ENST00000537408 PDE4BQ07343 736 aa11.92□□□□□ -0.5
CLSTN3-207ENST00000537408 TMED1Q13445 227 aa11.92□□□□□ -0.5
CLSTN3-207ENST00000537408 POLA2Q14181 598 aa11.92□□□□□ -0.5
CLSTN3-207ENST00000537408 GCKRQ14397 625 aa11.92□□□□□ -0.5
CLSTN3-207ENST00000537408 SAFBQ15424 915 aaKnown RBP eCLIP11.92□□□□□ -0.5
CLSTN3-207ENST00000537408 PROSER3Q2NL68 480 aa11.92□□□□□ -0.5
CLSTN3-207ENST00000537408 LRIG3Q6UXM1 1119 aa11.92□□□□□ -0.5
CLSTN3-207ENST00000537408 NACAP1Q9BZK3 213 aa11.92□□□□□ -0.5
CLSTN3-207ENST00000537408 MON2Q7Z3U7 1717 aa11.92□□□□□ -0.5
CLSTN3-207ENST00000537408 PPP6R2O75170 966 aa11.92□□□□□ -0.5
CLSTN3-207ENST00000537408 SASH1O94885 1247 aa11.92□□□□□ -0.5
CLSTN3-207ENST00000537408 CTSWP56202 376 aa11.92□□□□□ -0.5
CLSTN3-207ENST00000537408 SLC7A5Q01650 507 aa11.92□□□□□ -0.5
CLSTN3-207ENST00000537408 MFSD4BQ5TF39 518 aa11.92□□□□□ -0.5
CLSTN3-207ENST00000537408 GBP5Q96PP8 586 aa11.92□□□□□ -0.5
CLSTN3-207ENST00000537408 CRAMP1Q96RY5 1269 aa11.92□□□□□ -0.5
CLSTN3-207ENST00000537408 CNOT10Q9H9A5 744 aaKnown RBP11.92□□□□□ -0.5
CLSTN3-207ENST00000537408 ABT1Q9ULW3 272 aaKnown RBP11.92□□□□□ -0.5
CLSTN3-207ENST00000537408 NEDD4P46934 1319 aa11.92□□□□□ -0.5
CLSTN3-207ENST00000537408 XDHP47989 1333 aa11.92□□□□□ -0.5
CLSTN3-207ENST00000537408 SYNRGQ9UMZ2 1314 aa11.92□□□□□ -0.5
CLSTN3-207ENST00000537408 SEMA3EO15041 775 aa11.92□□□□□ -0.5
CLSTN3-207ENST00000537408 PRC1O43663 620 aa11.92□□□□□ -0.5
CLSTN3-207ENST00000537408 PPP2R2AP63151 447 aa11.92□□□□□ -0.5
CLSTN3-207ENST00000537408 ZBED6P86452 979 aa11.92□□□□□ -0.5
CLSTN3-207ENST00000537408 DEUP1Q05D60 604 aa11.92□□□□□ -0.5
CLSTN3-207ENST00000537408 KIF5AQ12840 1032 aa11.92□□□□□ -0.5
CLSTN3-207ENST00000537408 ZNF268Q14587 947 aaPredicted RBP11.92□□□□□ -0.5
CLSTN3-207ENST00000537408 HLFQ16534 295 aa11.92□□□□□ -0.5
CLSTN3-207ENST00000537408 KLHL10Q6JEL2 608 aa11.92□□□□□ -0.5
CLSTN3-207ENST00000537408 TMEM154Q6P9G4 183 aa11.92□□□□□ -0.5
CLSTN3-207ENST00000537408 ARHGAP18Q8N392 663 aa11.92□□□□□ -0.5
CLSTN3-207ENST00000537408 DDX27Q96GQ7 796 aaKnown RBP11.92□□□□□ -0.5
CLSTN3-207ENST00000537408 MAST3O60307 1309 aa11.92□□□□□ -0.5
CLSTN3-207ENST00000537408 EIF4E1BA6NMX2 242 aaKnown RBP11.91□□□□□ -0.5
CLSTN3-207ENST00000537408 IFIT3O14879 490 aaKnown RBP11.91□□□□□ -0.5
CLSTN3-207ENST00000537408 ZNF189O75820 626 aaPredicted RBP11.91□□□□□ -0.5
CLSTN3-207ENST00000537408 GSTA2P09210 222 aa11.91□□□□□ -0.5
CLSTN3-207ENST00000537408 TCP1P17987 556 aaKnown RBP11.91□□□□□ -0.5
CLSTN3-207ENST00000537408 GJA8P48165 433 aa11.91□□□□□ -0.5
CLSTN3-207ENST00000537408 ERVK-24P63145 666 aa11.91□□□□□ -0.5
CLSTN3-207ENST00000537408 ITIH4Q14624 930 aa11.91□□□□□ -0.5
CLSTN3-207ENST00000537408 STK11IPQ8N1F8 1099 aa11.91□□□□□ -0.5
CLSTN3-207ENST00000537408 PROM2Q8N271 834 aa11.91□□□□□ -0.5
CLSTN3-207ENST00000537408 RNF10Q8N5U6 811 aaKnown RBP11.91□□□□□ -0.5
CLSTN3-207ENST00000537408 CHMP6Q96FZ7 201 aa11.91□□□□□ -0.5
CLSTN3-207ENST00000537408 RMDN2Q96LZ7 410 aa11.91□□□□□ -0.5
CLSTN3-207ENST00000537408 TMCO1Q9UM00 188 aa11.91□□□□□ -0.5
CLSTN3-207ENST00000537408 CEMIPQ8WUJ3 1361 aa11.91□□□□□ -0.5
CLSTN3-207ENST00000537408 ZNF233A6NK53 670 aa11.91□□□□□ -0.5
CLSTN3-207ENST00000537408 M0R2C6 588 aa11.91□□□□□ -0.5
CLSTN3-207ENST00000537408 SGSM1Q2NKQ1 1148 aa11.91□□□□□ -0.5
CLSTN3-207ENST00000537408 FAM133BQ5BKY9 247 aaKnown RBP11.91□□□□□ -0.5
CLSTN3-207ENST00000537408 FKBP15Q5T1M5 1219 aa11.91□□□□□ -0.5
CLSTN3-207ENST00000537408 ATL2Q8NHH9 583 aa11.91□□□□□ -0.5
CLSTN3-207ENST00000537408 LRRC45Q96CN5 670 aa11.91□□□□□ -0.5
CLSTN3-207ENST00000537408 PLAAQ9Y263 795 aa11.91□□□□□ -0.5
CLSTN3-207ENST00000537408 ALS2Q96Q42 1657 aa11.91□□□□□ -0.5
CLSTN3-207ENST00000537408 A0A0D9SFI3 127 aa11.91□□□□□ -0.5
CLSTN3-207ENST00000537408 F8W031 263 aaPredicted RBP11.91□□□□□ -0.5
CLSTN3-207ENST00000537408 FMR1Q06787 632 aaKnown RBP eCLIP11.91□□□□□ -0.5
CLSTN3-207ENST00000537408 MKRN4PQ13434 485 aaPredicted RBP11.91□□□□□ -0.5
CLSTN3-207ENST00000537408 SESTD1Q86VW0 696 aa11.91□□□□□ -0.5
CLSTN3-207ENST00000537408 METTL16Q86W50 562 aaKnown RBP11.91□□□□□ -0.5
Retrieved 100 of 20,778 RNA–protein pairs in 14.1 ms