RNA–Protein interactions for RNA: ENST00000534647.1

CTNND1-238, Transcript of catenin delta 1, human

TSL 5

Gene CTNND1, Length 866 nt, Biotype protein coding, Subcellular localisation Cytosol, Nucleus .

RNA		Protein				Prediction (catRAPID)		Interaction (ENCODE eCLIP)
Transcript Symbol	Ensembl Transcript ID	Gene	UniProt Accession	Length	Protein Status	Prediction Score	Prediction z-Score	p-Value	Fold Change
CTNND1-238	ENST00000534647	CCDC136	Q96JN2	1154 aa		13.53	□□□□□ -0.24
CTNND1-238	ENST00000534647	SLC9A7	Q96T83	725 aa		13.53	□□□□□ -0.24
CTNND1-238	ENST00000534647	RNF41	Q9H4P4	317 aa	Predicted RBP	13.53	□□□□□ -0.24
CTNND1-238	ENST00000534647	ZBBX	A8MT70	800 aa		13.52	□□□□□ -0.25
CTNND1-238	ENST00000534647	MYOG	P15173	224 aa		13.52	□□□□□ -0.25
CTNND1-238	ENST00000534647	MFAP1	P55081	439 aa	Known RBP	13.52	□□□□□ -0.25
CTNND1-238	ENST00000534647	NMI	Q13287	307 aa	Predicted RBP	13.52	□□□□□ -0.25
CTNND1-238	ENST00000534647	BFSP2	Q13515	415 aa		13.52	□□□□□ -0.25
CTNND1-238	ENST00000534647	AAMP	Q13685	434 aa		13.52	□□□□□ -0.25
CTNND1-238	ENST00000534647	CCDC85B	Q15834	202 aa	Predicted RBP	13.52	□□□□□ -0.25
CTNND1-238	ENST00000534647	ZNF589	Q86UQ0	364 aa	Predicted RBP	13.52	□□□□□ -0.25
CTNND1-238	ENST00000534647	SESTD1	Q86VW0	696 aa		13.52	□□□□□ -0.25
CTNND1-238	ENST00000534647	RETREG2	Q8NC44	543 aa		13.52	□□□□□ -0.25
CTNND1-238	ENST00000534647	EXOC6	Q8TAG9	804 aa		13.52	□□□□□ -0.25
CTNND1-238	ENST00000534647	ADAMTS19	Q8TE59	1207 aa		13.52	□□□□□ -0.25
CTNND1-238	ENST00000534647	ESR2	Q92731	530 aa		13.52	□□□□□ -0.25
CTNND1-238	ENST00000534647	CCDC171	Q6TFL3	1326 aa		13.52	□□□□□ -0.25
CTNND1-238	ENST00000534647	SCN10A	Q9Y5Y9	1956 aa		13.51	□□□□□ -0.25
CTNND1-238	ENST00000534647	BAIAP3	O94812	1187 aa		13.51	□□□□□ -0.25
CTNND1-238	ENST00000534647	BMP1	P13497	986 aa		13.51	□□□□□ -0.25
CTNND1-238	ENST00000534647	AAK1	Q2M2I8	961 aa		13.51	□□□□□ -0.25
CTNND1-238	ENST00000534647	DEFB128	Q7Z7B8	93 aa		13.51	□□□□□ -0.25
CTNND1-238	ENST00000534647	IWS1	Q96ST2	819 aa		13.51	□□□□□ -0.25
CTNND1-238	ENST00000534647	CRBN	Q96SW2	442 aa		13.51	□□□□□ -0.25
CTNND1-238	ENST00000534647	BDP1	A6H8Y1	2624 aa		13.51	□□□□□ -0.25
CTNND1-238	ENST00000534647	MYO9B	Q13459	2157 aa		13.51	□□□□□ -0.25
CTNND1-238	ENST00000534647	NCOR1	O75376	2440 aa		13.5	□□□□□ -0.25
CTNND1-238	ENST00000534647	ABCB11	O95342	1321 aa		13.5	□□□□□ -0.25
CTNND1-238	ENST00000534647	ARIH2	O95376	493 aa		13.5	□□□□□ -0.25
CTNND1-238	ENST00000534647	PARN	O95453	639 aa	Known RBP	13.5	□□□□□ -0.25
CTNND1-238	ENST00000534647	CA3	P07451	260 aa		13.5	□□□□□ -0.25
CTNND1-238	ENST00000534647	HAND2	P61296	217 aa		13.5	□□□□□ -0.25
CTNND1-238	ENST00000534647	RBL2	Q08999	1139 aa		13.5	□□□□□ -0.25
CTNND1-238	ENST00000534647	FAM47C	Q5HY64	1035 aa		13.5	□□□□□ -0.25
CTNND1-238	ENST00000534647	B4GALNT3	Q6L9W6	998 aa		13.5	□□□□□ -0.25
CTNND1-238	ENST00000534647	MCF2L2	Q86YR7	1114 aa		13.5	□□□□□ -0.25
CTNND1-238	ENST00000534647	TBC1D10C	Q8IV04	446 aa		13.5	□□□□□ -0.25
CTNND1-238	ENST00000534647	CAGE1	Q8TC20	777 aa		13.5	□□□□□ -0.25
CTNND1-238	ENST00000534647	NSUN6	Q8TEA1	469 aa	Known RBP	13.5	□□□□□ -0.25
CTNND1-238	ENST00000534647	COPS5	Q92905	334 aa		13.5	□□□□□ -0.25
CTNND1-238	ENST00000534647	CTAGE1	Q96RT6	745 aa		13.5	□□□□□ -0.25
CTNND1-238	ENST00000534647	UHRF1	Q96T88	793 aa	Predicted RBP	13.5	□□□□□ -0.25
CTNND1-238	ENST00000534647	OSBPL3	Q9H4L5	887 aa		13.5	□□□□□ -0.25
CTNND1-238	ENST00000534647	MTCH2	Q9Y6C9	303 aa		13.5	□□□□□ -0.25
CTNND1-238	ENST00000534647	CHD7	Q9P2D1	2997 aa		13.5	□□□□□ -0.25
CTNND1-238	ENST00000534647	KIF28P	B7ZC32	967 aa		13.49	□□□□□ -0.25
CTNND1-238	ENST00000534647	ZNF213	O14771	459 aa		13.49	□□□□□ -0.25
CTNND1-238	ENST00000534647	GH1	P01241	217 aa		13.49	□□□□□ -0.25
CTNND1-238	ENST00000534647	SDS	P20132	328 aa		13.49	□□□□□ -0.25
CTNND1-238	ENST00000534647	TAP1	Q03518	808 aa		13.49	□□□□□ -0.25
CTNND1-238	ENST00000534647	PTGIS	Q16647	500 aa		13.49	□□□□□ -0.25
CTNND1-238	ENST00000534647	IQCA1	Q86XH1	822 aa		13.49	□□□□□ -0.25
CTNND1-238	ENST00000534647	HERC6	Q8IVU3	1022 aa		13.49	□□□□□ -0.25
CTNND1-238	ENST00000534647	CCDC155	Q8N6L0	562 aa		13.49	□□□□□ -0.25
CTNND1-238	ENST00000534647	PNMA1	Q8ND90	353 aa		13.49	□□□□□ -0.25
CTNND1-238	ENST00000534647	SYTL5	Q8TDW5	730 aa	Predicted RBP	13.49	□□□□□ -0.25
CTNND1-238	ENST00000534647	AFAP1L1	Q8TED9	768 aa		13.49	□□□□□ -0.25
CTNND1-238	ENST00000534647	EMID1	Q96A84	441 aa	Predicted RBP	13.49	□□□□□ -0.25
CTNND1-238	ENST00000534647	MMP3	P08254	477 aa		13.48	□□□□□ -0.25
CTNND1-238	ENST00000534647	GOLGA8H	P0CJ92	632 aa		13.48	□□□□□ -0.25
CTNND1-238	ENST00000534647	CAST	P20810	708 aa	Known RBP	13.48	□□□□□ -0.25
CTNND1-238	ENST00000534647	COL9A1	P20849	921 aa		13.48	□□□□□ -0.25
CTNND1-238	ENST00000534647	GHRHR	Q02643	423 aa		13.48	□□□□□ -0.25
CTNND1-238	ENST00000534647	ARHGAP1	Q07960	439 aa		13.48	□□□□□ -0.25
CTNND1-238	ENST00000534647	GPNMB	Q14956	572 aa		13.48	□□□□□ -0.25
CTNND1-238	ENST00000534647	STXBP2	Q15833	593 aa		13.48	□□□□□ -0.25
CTNND1-238	ENST00000534647	CDC37	Q16543	378 aa	Predicted RBP	13.48	□□□□□ -0.25
CTNND1-238	ENST00000534647	USH1G	Q495M9	461 aa		13.48	□□□□□ -0.25
CTNND1-238	ENST00000534647	ASPRV1	Q53RT3	343 aa		13.48	□□□□□ -0.25
CTNND1-238	ENST00000534647	SMC5	Q8IY18	1101 aa		13.48	□□□□□ -0.25
CTNND1-238	ENST00000534647	ADGRF4	Q8IZF3	695 aa		13.48	□□□□□ -0.25
CTNND1-238	ENST00000534647	AFG1L	Q8WV93	481 aa		13.48	□□□□□ -0.25
CTNND1-238	ENST00000534647	TBC1D5	Q92609	795 aa		13.48	□□□□□ -0.25
CTNND1-238	ENST00000534647	KAT2B	Q92831	832 aa		13.48	□□□□□ -0.25
CTNND1-238	ENST00000534647	TAAR1	Q96RJ0	339 aa		13.48	□□□□□ -0.25
CTNND1-238	ENST00000534647	FTO	Q9C0B1	505 aa	Known RBP eCLIP	13.48	□□□□□ -0.25
CTNND1-238	ENST00000534647	UBA5	Q9GZZ9	404 aa		13.48	□□□□□ -0.25
CTNND1-238	ENST00000534647	GZF1	Q9H116	711 aa	Predicted RBP	13.48	□□□□□ -0.25
CTNND1-238	ENST00000534647	MAP3K20	Q9NYL2	800 aa	Known RBP	13.48	□□□□□ -0.25
CTNND1-238	ENST00000534647	COG5	Q9UP83	839 aa		13.48	□□□□□ -0.25
CTNND1-238	ENST00000534647	NOD1	Q9Y239	953 aa		13.48	□□□□□ -0.25
CTNND1-238	ENST00000534647	NEDD4	P46934	1319 aa		13.47	□□□□□ -0.25
CTNND1-238	ENST00000534647	MUC3A	Q02505	3323 aa		13.47	□□□□□ -0.25
CTNND1-238	ENST00000534647	GBF1	Q92538	1859 aa		13.47	□□□□□ -0.25
CTNND1-238	ENST00000534647	TRIM6-TRIM34	B2RNG4	842 aa		13.47	□□□□□ -0.25
CTNND1-238	ENST00000534647	EIF3J	O75822	258 aa	Known RBP	13.47	□□□□□ -0.25
CTNND1-238	ENST00000534647	CXCL10	P02778	98 aa		13.47	□□□□□ -0.25
CTNND1-238	ENST00000534647	SELP	P16109	830 aa		13.47	□□□□□ -0.25
CTNND1-238	ENST00000534647	DGKD	Q16760	1214 aa		13.47	□□□□□ -0.25
CTNND1-238	ENST00000534647	LY6K	Q17RY6	165 aa		13.47	□□□□□ -0.25
CTNND1-238	ENST00000534647	SAMD3	Q8N6K7	520 aa		13.47	□□□□□ -0.25
CTNND1-238	ENST00000534647	ZSCAN10	Q96SZ4	725 aa	Predicted RBP	13.47	□□□□□ -0.25
CTNND1-238	ENST00000534647	RMDN3	Q96TC7	470 aa		13.47	□□□□□ -0.25
CTNND1-238	ENST00000534647	ZKSCAN3	Q9BRR0	538 aa		13.47	□□□□□ -0.25
CTNND1-238	ENST00000534647	KAT14	Q9H8E8	782 aa		13.47	□□□□□ -0.25
CTNND1-238	ENST00000534647	LMCD1	Q9NZU5	365 aa		13.47	□□□□□ -0.25
CTNND1-238	ENST00000534647	ZSWIM5	Q9P217	1185 aa		13.47	□□□□□ -0.25
CTNND1-238	ENST00000534647	COL20A1	Q9P218	1284 aa		13.47	□□□□□ -0.25
CTNND1-238	ENST00000534647	DDX41	Q9UJV9	622 aa	Known RBP	13.47	□□□□□ -0.25
CTNND1-238	ENST00000534647	MRPL11	Q9Y3B7	192 aa	Known RBP	13.47	□□□□□ -0.25

Retrieved 100 of 20,778 RNA–protein pairs in 28.6 ms