RNA–Protein interactions for RNA: ENST00000533492.1

CPSF1-211, Transcript of cleavage and polyadenylation specific factor 1, humanhuman

TSL 5

Gene CPSF1, Length 510 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CPSF1-211ENST00000533492 TRMT13Q9NUP7 481 aaKnown RBP17.88■□□□□ 0.45
CPSF1-211ENST00000533492 DDX41Q9UJV9 622 aaKnown RBP17.88■□□□□ 0.45
CPSF1-211ENST00000533492 UMODL1Q5DID0 1318 aa17.88■□□□□ 0.45
CPSF1-211ENST00000533492 FGBP02675 491 aa17.87■□□□□ 0.45
CPSF1-211ENST00000533492 CASTP20810 708 aaKnown RBP17.87■□□□□ 0.45
CPSF1-211ENST00000533492 GNAQP50148 359 aa17.87■□□□□ 0.45
CPSF1-211ENST00000533492 ARHGAP1Q07960 439 aa17.87■□□□□ 0.45
CPSF1-211ENST00000533492 NFRKBQ6P4R8 1299 aa17.87■□□□□ 0.45
CPSF1-211ENST00000533492 RPUSD2Q8IZ73 545 aaKnown RBP17.87■□□□□ 0.45
CPSF1-211ENST00000533492 RRP36Q96EU6 259 aaKnown RBP17.87■□□□□ 0.45
CPSF1-211ENST00000533492 GUCD1Q96NT3 240 aa17.87■□□□□ 0.45
CPSF1-211ENST00000533492 LZTS2Q9BRK4 669 aa17.87■□□□□ 0.45
CPSF1-211ENST00000533492 MTIF3Q9H2K0 278 aaKnown RBP17.87■□□□□ 0.45
CPSF1-211ENST00000533492 KIAA1217Q5T5P2 1943 aa17.87■□□□□ 0.45
CPSF1-211ENST00000533492 SH2B2O14492 632 aaPredicted RBP17.86■□□□□ 0.45
CPSF1-211ENST00000533492 MMP3P08254 477 aa17.86■□□□□ 0.45
CPSF1-211ENST00000533492 CYP2C9P11712 490 aa17.86■□□□□ 0.45
CPSF1-211ENST00000533492 PTPN11Q06124 597 aaPredicted RBP17.86■□□□□ 0.45
CPSF1-211ENST00000533492 LAMC2Q13753 1193 aa17.86■□□□□ 0.45
CPSF1-211ENST00000533492 PGM5Q15124 567 aa17.86■□□□□ 0.45
CPSF1-211ENST00000533492 DGKDQ16760 1214 aa17.86■□□□□ 0.45
CPSF1-211ENST00000533492 KCNV1Q6PIU1 500 aa17.86■□□□□ 0.45
CPSF1-211ENST00000533492 VSIG10LQ86VR7 867 aa17.86■□□□□ 0.45
CPSF1-211ENST00000533492 DHX37Q8IY37 1157 aaKnown RBP17.86■□□□□ 0.45
CPSF1-211ENST00000533492 PPP1R13LQ8WUF5 828 aa17.86■□□□□ 0.45
CPSF1-211ENST00000533492 SPZ1Q9BXG8 430 aa17.86■□□□□ 0.45
CPSF1-211ENST00000533492 SEC63Q9UGP8 760 aaKnown RBP17.86■□□□□ 0.45
CPSF1-211ENST00000533492 NOD1Q9Y239 953 aa17.86■□□□□ 0.45
CPSF1-211ENST00000533492 CALM1P0DP23 149 aa17.85■□□□□ 0.45
CPSF1-211ENST00000533492 CALM2P0DP24 149 aa17.85■□□□□ 0.45
CPSF1-211ENST00000533492 CALM3P0DP25 149 aa17.85■□□□□ 0.45
CPSF1-211ENST00000533492 SMARCA1P28370 1054 aa17.85■□□□□ 0.45
CPSF1-211ENST00000533492 CCND2P30279 289 aa17.85■□□□□ 0.45
CPSF1-211ENST00000533492 LIFRP42702 1097 aa17.85■□□□□ 0.45
CPSF1-211ENST00000533492 CDX2Q99626 313 aaPredicted RBP17.85■□□□□ 0.45
CPSF1-211ENST00000533492 SCN10AQ9Y5Y9 1956 aa17.85■□□□□ 0.45
CPSF1-211ENST00000533492 SLC12A7Q9Y666 1083 aa17.85■□□□□ 0.45
CPSF1-211ENST00000533492 TMEM265A0A087WTH1 108 aa17.84■□□□□ 0.45
CPSF1-211ENST00000533492 DNAJB2P25686 324 aa17.84■□□□□ 0.45
CPSF1-211ENST00000533492 SYNE3Q6ZMZ3 975 aa17.84■□□□□ 0.45
CPSF1-211ENST00000533492 OTOP2Q7RTS6 562 aa17.84■□□□□ 0.45
CPSF1-211ENST00000533492 RETREG2Q8NC44 543 aa17.84■□□□□ 0.45
CPSF1-211ENST00000533492 HERVK_113Q902F9 699 aa17.84■□□□□ 0.45
CPSF1-211ENST00000533492 CUL5Q93034 780 aa17.84■□□□□ 0.45
CPSF1-211ENST00000533492 EMID1Q96A84 441 aaPredicted RBP17.84■□□□□ 0.45
CPSF1-211ENST00000533492 SCLYQ96I15 445 aa17.84■□□□□ 0.45
CPSF1-211ENST00000533492 CCDC136Q96JN2 1154 aa17.84■□□□□ 0.45
CPSF1-211ENST00000533492 LRRC2Q9BYS8 371 aa17.84■□□□□ 0.45
CPSF1-211ENST00000533492 WNT8AQ9H1J5 351 aa17.84■□□□□ 0.45
CPSF1-211ENST00000533492 TTYH1Q9H313 450 aaPredicted RBP17.84■□□□□ 0.45
CPSF1-211ENST00000533492 MYH7BA7E2Y1 1941 aa17.83■□□□□ 0.44
CPSF1-211ENST00000533492 CDC45O75419 566 aa17.83■□□□□ 0.44
CPSF1-211ENST00000533492 TGFB3P10600 412 aa17.83■□□□□ 0.44
CPSF1-211ENST00000533492 RXRAP19793 462 aa17.83■□□□□ 0.44
CPSF1-211ENST00000533492 RASIP1Q5U651 963 aa17.83■□□□□ 0.44
CPSF1-211ENST00000533492 IL31RAQ8NI17 732 aa17.83■□□□□ 0.44
CPSF1-211ENST00000533492 SMARCC2Q8TAQ2 1214 aa17.83■□□□□ 0.44
CPSF1-211ENST00000533492 ZFP91Q96JP5 570 aaPredicted RBP17.83■□□□□ 0.44
CPSF1-211ENST00000533492 NEK1Q96PY6 1258 aa17.83■□□□□ 0.44
CPSF1-211ENST00000533492 COL6A3P12111 3177 aa17.83■□□□□ 0.44
CPSF1-211ENST00000533492 GRXCR1A8MXD5 290 aa17.82■□□□□ 0.44
CPSF1-211ENST00000533492 SORBS3O60504 671 aa17.82■□□□□ 0.44
CPSF1-211ENST00000533492 RGS20O76081 388 aa17.82■□□□□ 0.44
CPSF1-211ENST00000533492 PLEKHA8P1O95397 391 aa17.82■□□□□ 0.44
CPSF1-211ENST00000533492 GGPS1O95749 300 aa17.82■□□□□ 0.44
CPSF1-211ENST00000533492 BFSP2Q13515 415 aa17.82■□□□□ 0.44
CPSF1-211ENST00000533492 PTGISQ16647 500 aa17.82■□□□□ 0.44
CPSF1-211ENST00000533492 RAB11FIP4Q86YS3 637 aa17.82■□□□□ 0.44
CPSF1-211ENST00000533492 CMTR1Q8N1G2 835 aaKnown RBP17.82■□□□□ 0.44
CPSF1-211ENST00000533492 SRBD1Q8N5C6 995 aaKnown RBP17.82■□□□□ 0.44
CPSF1-211ENST00000533492 PPTC7Q8NI37 304 aa17.82■□□□□ 0.44
CPSF1-211ENST00000533492 TIFAQ96CG3 184 aa17.82■□□□□ 0.44
CPSF1-211ENST00000533492 KATNAL1Q9BW62 490 aa17.82■□□□□ 0.44
CPSF1-211ENST00000533492 MLXIPQ9HAP2 919 aa17.82■□□□□ 0.44
CPSF1-211ENST00000533492 ZBBXA8MT70 800 aa17.81■□□□□ 0.44
CPSF1-211ENST00000533492 PPFIA4O75335 1185 aa17.81■□□□□ 0.44
CPSF1-211ENST00000533492 PFKMP08237 780 aa17.81■□□□□ 0.44
CPSF1-211ENST00000533492 PSEN2P49810 448 aa17.81■□□□□ 0.44
CPSF1-211ENST00000533492 COL9A3Q14050 684 aaPredicted RBP17.81■□□□□ 0.44
CPSF1-211ENST00000533492 GNPTABQ3T906 1256 aa17.81■□□□□ 0.44
CPSF1-211ENST00000533492 CELF3Q5SZQ8 465 aaKnown RBP17.81■□□□□ 0.44
CPSF1-211ENST00000533492 MYSM1Q5VVJ2 828 aa17.81■□□□□ 0.44
CPSF1-211ENST00000533492 DEFB128Q7Z7B8 93 aa17.81■□□□□ 0.44
CPSF1-211ENST00000533492 CCDC82Q8N4S0 544 aa17.81■□□□□ 0.44
CPSF1-211ENST00000533492 CCDC155Q8N6L0 562 aa17.81■□□□□ 0.44
CPSF1-211ENST00000533492 C7orf31Q8N865 590 aa17.81■□□□□ 0.44
CPSF1-211ENST00000533492 FANCBQ8NB91 859 aa17.81■□□□□ 0.44
CPSF1-211ENST00000533492 MYLIPQ8WY64 445 aa17.81■□□□□ 0.44
CPSF1-211ENST00000533492 KAT2BQ92831 832 aa17.81■□□□□ 0.44
CPSF1-211ENST00000533492 SPATA33Q96N06 139 aa17.81■□□□□ 0.44
CPSF1-211ENST00000533492 ALG1Q9BT22 464 aa17.81■□□□□ 0.44
CPSF1-211ENST00000533492 CXXC1Q9P0U4 656 aaPredicted RBP17.81■□□□□ 0.44
CPSF1-211ENST00000533492 MSRAQ9UJ68 235 aa17.81■□□□□ 0.44
CPSF1-211ENST00000533492 PITPNM1O00562 1244 aa17.8■□□□□ 0.44
CPSF1-211ENST00000533492 STAM2O75886 525 aa17.8■□□□□ 0.44
CPSF1-211ENST00000533492 RFC2P35250 354 aa17.8■□□□□ 0.44
CPSF1-211ENST00000533492 USP17L6PQ6QN14 398 aa17.8■□□□□ 0.44
CPSF1-211ENST00000533492 SESTD1Q86VW0 696 aa17.8■□□□□ 0.44
CPSF1-211ENST00000533492 SGMS1Q86VZ5 419 aa17.8■□□□□ 0.44
CPSF1-211ENST00000533492 MICU3Q86XE3 530 aa17.8■□□□□ 0.44
Retrieved 100 of 20,778 RNA–protein pairs in 54.1 ms