RNA–Protein interactions for RNA: ENST00000513818.1

TOPBP1-209, Transcript of DNA topoisomerase II binding protein 1, humanhuman

TSL 1 (best)

Gene TOPBP1, Length 898 nt, Biotype retained intron, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
TOPBP1-209ENST00000513818 EDNRBP24530 442 aa11.22□□□□□ -0.61
TOPBP1-209ENST00000513818 ADCYAP1R1P41586 468 aa11.22□□□□□ -0.61
TOPBP1-209ENST00000513818 NR5A1Q13285 461 aa11.22□□□□□ -0.61
TOPBP1-209ENST00000513818 EARS2Q5JPH6 523 aaKnown RBP11.22□□□□□ -0.61
TOPBP1-209ENST00000513818 GJC2Q5T442 439 aaPredicted RBP11.22□□□□□ -0.61
TOPBP1-209ENST00000513818 KRT40Q6A162 431 aa11.22□□□□□ -0.61
TOPBP1-209ENST00000513818 MAMDC4Q6UXC1 1216 aa11.22□□□□□ -0.61
TOPBP1-209ENST00000513818 TRMT44Q8IYL2 757 aaKnown RBP11.22□□□□□ -0.61
TOPBP1-209ENST00000513818 BLIDQ8IZY5 108 aa11.22□□□□□ -0.61
TOPBP1-209ENST00000513818 DNERQ8NFT8 737 aa11.22□□□□□ -0.61
TOPBP1-209ENST00000513818 NSUN6Q8TEA1 469 aaKnown RBP11.22□□□□□ -0.61
TOPBP1-209ENST00000513818 WASF1Q92558 559 aa11.22□□□□□ -0.61
TOPBP1-209ENST00000513818 ABHD8Q96I13 439 aa11.22□□□□□ -0.61
TOPBP1-209ENST00000513818 C8orf76Q96K31 380 aa11.22□□□□□ -0.61
TOPBP1-209ENST00000513818 XRN2Q9H0D6 950 aaKnown RBP eCLIP11.22□□□□□ -0.61
TOPBP1-209ENST00000513818 SH3GLB2Q9NR46 395 aa11.22□□□□□ -0.61
TOPBP1-209ENST00000513818 CNPY2Q9Y2B0 182 aa11.22□□□□□ -0.61
TOPBP1-209ENST00000513818 KIAA1217Q5T5P2 1943 aa11.21□□□□□ -0.61
TOPBP1-209ENST00000513818 DOCK5Q9H7D0 1870 aa11.21□□□□□ -0.61
TOPBP1-209ENST00000513818 NR3C2P08235 984 aa11.21□□□□□ -0.61
TOPBP1-209ENST00000513818 GNA11P29992 359 aa11.21□□□□□ -0.61
TOPBP1-209ENST00000513818 CCND2P30279 289 aa11.21□□□□□ -0.61
TOPBP1-209ENST00000513818 KRT2P35908 639 aa11.21□□□□□ -0.61
TOPBP1-209ENST00000513818 IRX5P78411 483 aaPredicted RBP11.21□□□□□ -0.61
TOPBP1-209ENST00000513818 MRPS9P82933 396 aaKnown RBP11.21□□□□□ -0.61
TOPBP1-209ENST00000513818 ACVR2BQ13705 512 aa11.21□□□□□ -0.61
TOPBP1-209ENST00000513818 TRIM29Q14134 588 aa11.21□□□□□ -0.61
TOPBP1-209ENST00000513818 SEPT14Q6ZU15 432 aa11.21□□□□□ -0.61
TOPBP1-209ENST00000513818 DIS3L2Q8IYB7 885 aaKnown RBP11.21□□□□□ -0.61
TOPBP1-209ENST00000513818 IL27Q8NEV9 243 aa11.21□□□□□ -0.61
TOPBP1-209ENST00000513818 DEFB118Q96PH6 123 aa11.21□□□□□ -0.61
TOPBP1-209ENST00000513818 UIMC1Q96RL1 719 aa11.21□□□□□ -0.61
TOPBP1-209ENST00000513818 RNF208Q9H0X6 261 aa11.21□□□□□ -0.61
TOPBP1-209ENST00000513818 RTEL1Q9NZ71 1219 aa11.21□□□□□ -0.61
TOPBP1-209ENST00000513818 ZSCAN21Q9Y5A6 473 aaPredicted RBP11.21□□□□□ -0.61
TOPBP1-209ENST00000513818 KIF28PB7ZC32 967 aa11.2□□□□□ -0.62
TOPBP1-209ENST00000513818 M0R2N6 131 aa11.2□□□□□ -0.62
TOPBP1-209ENST00000513818 ARIH2O95376 493 aa11.2□□□□□ -0.62
TOPBP1-209ENST00000513818 MMP1P03956 469 aa11.2□□□□□ -0.62
TOPBP1-209ENST00000513818 XBP1P17861 261 aa11.2□□□□□ -0.62
TOPBP1-209ENST00000513818 SOX10P56693 466 aa11.2□□□□□ -0.62
TOPBP1-209ENST00000513818 AP3B2Q13367 1082 aa11.2□□□□□ -0.62
TOPBP1-209ENST00000513818 CCDC144BQ3MJ40 725 aa11.2□□□□□ -0.62
TOPBP1-209ENST00000513818 TAPT1Q6NXT6 567 aa11.2□□□□□ -0.62
TOPBP1-209ENST00000513818 PIK3AP1Q6ZUJ8 805 aa11.2□□□□□ -0.62
TOPBP1-209ENST00000513818 MSL3Q8N5Y2 521 aaKnown RBP11.2□□□□□ -0.62
TOPBP1-209ENST00000513818 DAGLBQ8NCG7 672 aa11.2□□□□□ -0.62
TOPBP1-209ENST00000513818 MORC4Q8TE76 937 aa11.2□□□□□ -0.62
TOPBP1-209ENST00000513818 COPS5Q92905 334 aa11.2□□□□□ -0.62
TOPBP1-209ENST00000513818 ABHD16BQ9H3Z7 469 aa11.2□□□□□ -0.62
TOPBP1-209ENST00000513818 HMX1Q9NP08 348 aaPredicted RBP11.2□□□□□ -0.62
TOPBP1-209ENST00000513818 MAP3K20Q9NYL2 800 aaKnown RBP11.2□□□□□ -0.62
TOPBP1-209ENST00000513818 PKD2L1Q9P0L9 805 aa11.2□□□□□ -0.62
TOPBP1-209ENST00000513818 POTEFA5A3E0 1075 aa11.19□□□□□ -0.62
TOPBP1-209ENST00000513818 CCDC85CA6NKD9 419 aa11.19□□□□□ -0.62
TOPBP1-209ENST00000513818 BTBD18B2RXH4 712 aa11.19□□□□□ -0.62
TOPBP1-209ENST00000513818 RGS20O76081 388 aa11.19□□□□□ -0.62
TOPBP1-209ENST00000513818 HSP90AA1P07900 732 aaKnown RBP11.19□□□□□ -0.62
TOPBP1-209ENST00000513818 SREBF1P36956 1147 aa11.19□□□□□ -0.62
TOPBP1-209ENST00000513818 ARHGAP4P98171 946 aa11.19□□□□□ -0.62
TOPBP1-209ENST00000513818 STXBP2Q15833 593 aa11.19□□□□□ -0.62
TOPBP1-209ENST00000513818 INF2Q27J81 1249 aa11.19□□□□□ -0.62
TOPBP1-209ENST00000513818 VSIG10LQ86VR7 867 aa11.19□□□□□ -0.62
TOPBP1-209ENST00000513818 SAMD3Q8N6K7 520 aa11.19□□□□□ -0.62
TOPBP1-209ENST00000513818 CYP2W1Q8TAV3 490 aa11.19□□□□□ -0.62
TOPBP1-209ENST00000513818 BICD2Q8TD16 824 aa11.19□□□□□ -0.62
TOPBP1-209ENST00000513818 TBCKQ8TEA7 893 aa11.19□□□□□ -0.62
TOPBP1-209ENST00000513818 IWS1Q96ST2 819 aa11.19□□□□□ -0.62
TOPBP1-209ENST00000513818 MPHOSPH6Q99547 160 aaKnown RBP11.19□□□□□ -0.62
TOPBP1-209ENST00000513818 GLT8D2Q9H1C3 349 aa11.19□□□□□ -0.62
TOPBP1-209ENST00000513818 VTA1Q9NP79 307 aa11.19□□□□□ -0.62
TOPBP1-209ENST00000513818 PAK6Q9NQU5 681 aaPredicted RBP11.19□□□□□ -0.62
TOPBP1-209ENST00000513818 DDX20Q9UHI6 824 aaKnown RBP11.19□□□□□ -0.62
TOPBP1-209ENST00000513818 MKI67P46013 3256 aaKnown RBP11.18□□□□□ -0.62
TOPBP1-209ENST00000513818 CCDC194A0A1B0GVG4 234 aa11.18□□□□□ -0.62
TOPBP1-209ENST00000513818 VPS37CA5D8V6 355 aaPredicted RBP11.18□□□□□ -0.62
TOPBP1-209ENST00000513818 MYADML2A6NDP7 307 aa11.18□□□□□ -0.62
TOPBP1-209ENST00000513818 H3BQV1 296 aa11.18□□□□□ -0.62
TOPBP1-209ENST00000513818 WNT7AO00755 349 aa11.18□□□□□ -0.62
TOPBP1-209ENST00000513818 SEPT4O43236 478 aa11.18□□□□□ -0.62
TOPBP1-209ENST00000513818 EDIL3O43854 480 aa11.18□□□□□ -0.62
TOPBP1-209ENST00000513818 TDP2O95551 362 aa11.18□□□□□ -0.62
TOPBP1-209ENST00000513818 FOSP01100 380 aaPredicted RBP11.18□□□□□ -0.62
TOPBP1-209ENST00000513818 AKR1A1P14550 325 aa11.18□□□□□ -0.62
TOPBP1-209ENST00000513818 SMPD1P17405 629 aa11.18□□□□□ -0.62
TOPBP1-209ENST00000513818 ITGB5P18084 799 aa11.18□□□□□ -0.62
TOPBP1-209ENST00000513818 SEMA3FQ13275 785 aa11.18□□□□□ -0.62
TOPBP1-209ENST00000513818 LY6KQ17RY6 165 aa11.18□□□□□ -0.62
TOPBP1-209ENST00000513818 IFFO2Q5TF58 517 aa11.18□□□□□ -0.62
TOPBP1-209ENST00000513818 PCNX4Q63HM2 1172 aa11.18□□□□□ -0.62
TOPBP1-209ENST00000513818 GALNT17Q6IS24 598 aa11.18□□□□□ -0.62
TOPBP1-209ENST00000513818 FBXO18Q8NFZ0 1043 aa11.18□□□□□ -0.62
TOPBP1-209ENST00000513818 TNFRSF25Q93038 417 aa11.18□□□□□ -0.62
TOPBP1-209ENST00000513818 WDR11Q9BZH6 1224 aa11.18□□□□□ -0.62
TOPBP1-209ENST00000513818 MAF1Q9H063 256 aa11.18□□□□□ -0.62
TOPBP1-209ENST00000513818 ZMYND15Q9H091 742 aa11.18□□□□□ -0.62
TOPBP1-209ENST00000513818 EHMT1Q9H9B1 1298 aa11.18□□□□□ -0.62
TOPBP1-209ENST00000513818 BRMS1Q9HCU9 246 aa11.18□□□□□ -0.62
TOPBP1-209ENST00000513818 MRVI1Q9Y6F6 885 aa11.18□□□□□ -0.62
TOPBP1-209ENST00000513818 SYNRGQ9UMZ2 1314 aa11.17□□□□□ -0.62
Retrieved 100 of 20,778 RNA–protein pairs in 16.8 ms