RNA–Protein interactions for RNA: ENST00000506880.5

PDGFC-205, Transcript of platelet derived growth factor C, humanhuman

TSL 2

Gene PDGFC, Length 1,014 nt, Biotype nonsense mediated decay, Subcellular localisation Cytoplasm, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
PDGFC-205ENST00000506880 PCSK9Q8NBP7 692 aaKnown RBP9.66□□□□□ -0.86
PDGFC-205ENST00000506880 CRYGNQ8WXF5 182 aa9.66□□□□□ -0.86
PDGFC-205ENST00000506880 C8orf76Q96K31 380 aa9.66□□□□□ -0.86
PDGFC-205ENST00000506880 KATNBL1Q9H079 304 aa9.66□□□□□ -0.86
PDGFC-205ENST00000506880 XRN2Q9H0D6 950 aaKnown RBP eCLIP9.66□□□□□ -0.86
PDGFC-205ENST00000506880 UPF3AQ9H1J1 476 aaKnown RBP9.66□□□□□ -0.86
PDGFC-205ENST00000506880 BIN2Q9UBW5 565 aaPredicted RBP9.66□□□□□ -0.86
PDGFC-205ENST00000506880 DDX20Q9UHI6 824 aaKnown RBP9.66□□□□□ -0.86
PDGFC-205ENST00000506880 SMC3Q9UQE7 1217 aa9.66□□□□□ -0.86
PDGFC-205ENST00000506880 NFASCO94856 1347 aa9.65□□□□□ -0.86
PDGFC-205ENST00000506880 MOXD2PA6NHM9 499 aa9.65□□□□□ -0.86
PDGFC-205ENST00000506880 SNAI1O95863 264 aaPredicted RBP9.65□□□□□ -0.86
PDGFC-205ENST00000506880 BMP15O95972 392 aa9.65□□□□□ -0.86
PDGFC-205ENST00000506880 PGK2P07205 417 aa9.65□□□□□ -0.86
PDGFC-205ENST00000506880 ZNF865P0CJ78 1059 aaPredicted RBP9.65□□□□□ -0.86
PDGFC-205ENST00000506880 FDPSP14324 419 aaKnown RBP9.65□□□□□ -0.86
PDGFC-205ENST00000506880 U2AF2P26368 475 aaKnown RBP eCLIP9.65□□□□□ -0.86
PDGFC-205ENST00000506880 CAP1Q01518 475 aa9.65□□□□□ -0.86
PDGFC-205ENST00000506880 CNTN2Q02246 1040 aa9.65□□□□□ -0.86
PDGFC-205ENST00000506880 NONOQ15233 471 aaKnown RBP eCLIP9.65□□□□□ -0.86
PDGFC-205ENST00000506880 CEP55Q53EZ4 464 aa9.65□□□□□ -0.86
PDGFC-205ENST00000506880 PPP4R3AQ6IN85 833 aa9.65□□□□□ -0.86
PDGFC-205ENST00000506880 RNF180Q86T96 592 aa9.65□□□□□ -0.86
PDGFC-205ENST00000506880 CCDC83Q8IWF9 413 aa9.65□□□□□ -0.86
PDGFC-205ENST00000506880 TNS4Q8IZW8 715 aa9.65□□□□□ -0.86
PDGFC-205ENST00000506880 CMTR1Q8N1G2 835 aaKnown RBP9.65□□□□□ -0.86
PDGFC-205ENST00000506880 GPKOWQ92917 476 aaPredicted RBP eCLIP9.65□□□□□ -0.86
PDGFC-205ENST00000506880 TNPO1Q92973 898 aaKnown RBP9.65□□□□□ -0.86
PDGFC-205ENST00000506880 ANO3Q9BYT9 981 aa9.65□□□□□ -0.86
PDGFC-205ENST00000506880 DAXXQ9UER7 740 aaPredicted RBP9.65□□□□□ -0.86
PDGFC-205ENST00000506880 OGDHLQ9ULD0 1010 aa9.65□□□□□ -0.86
PDGFC-205ENST00000506880 PCDHA6Q9UN73 950 aa9.65□□□□□ -0.86
PDGFC-205ENST00000506880 PCDHA8Q9Y5H6 950 aa9.65□□□□□ -0.86
PDGFC-205ENST00000506880 STK24Q9Y6E0 443 aa9.65□□□□□ -0.86
PDGFC-205ENST00000506880 MORC2Q9Y6X9 1032 aaPredicted RBP9.65□□□□□ -0.86
PDGFC-205ENST00000506880 CENPFP49454 3210 aa9.65□□□□□ -0.87
PDGFC-205ENST00000506880 KAT6AQ92794 2004 aa9.65□□□□□ -0.87
PDGFC-205ENST00000506880 MYH9P35579 1960 aaKnown RBP9.64□□□□□ -0.87
PDGFC-205ENST00000506880 CCDC194A0A1B0GVG4 234 aa9.64□□□□□ -0.87
PDGFC-205ENST00000506880 DNM1LO00429 736 aa9.64□□□□□ -0.87
PDGFC-205ENST00000506880 MEIS1O00470 390 aa9.64□□□□□ -0.87
PDGFC-205ENST00000506880 LAD1O00515 517 aa9.64□□□□□ -0.87
PDGFC-205ENST00000506880 LARGE1O95461 756 aa9.64□□□□□ -0.87
PDGFC-205ENST00000506880 SGPL1O95470 568 aa9.64□□□□□ -0.87
PDGFC-205ENST00000506880 RPLP2P05387 115 aaKnown RBP9.64□□□□□ -0.87
PDGFC-205ENST00000506880 HOXD8P13378 290 aaPredicted RBP9.64□□□□□ -0.87
PDGFC-205ENST00000506880 CCL5P13501 91 aa9.64□□□□□ -0.87
PDGFC-205ENST00000506880 SLC4A3P48751 1232 aa9.64□□□□□ -0.87
PDGFC-205ENST00000506880 CPT1AP50416 773 aa9.64□□□□□ -0.87
PDGFC-205ENST00000506880 GJA9P57773 515 aa9.64□□□□□ -0.87
PDGFC-205ENST00000506880 SNAP25P60880 206 aa9.64□□□□□ -0.87
PDGFC-205ENST00000506880 ARHGAP4P98171 946 aa9.64□□□□□ -0.87
PDGFC-205ENST00000506880 LAMC2Q13753 1193 aa9.64□□□□□ -0.87
PDGFC-205ENST00000506880 C1orf53Q5VUE5 145 aa9.64□□□□□ -0.87
PDGFC-205ENST00000506880 ATL3Q6DD88 541 aa9.64□□□□□ -0.87
PDGFC-205ENST00000506880 TYW1BQ6NUM6 668 aa9.64□□□□□ -0.87
PDGFC-205ENST00000506880 CCDC62Q6P9F0 684 aa9.64□□□□□ -0.87
PDGFC-205ENST00000506880 BRAPQ7Z569 592 aa9.64□□□□□ -0.87
PDGFC-205ENST00000506880 KCTD17Q8N5Z5 321 aa9.64□□□□□ -0.87
PDGFC-205ENST00000506880 NECAB1Q8N987 351 aa9.64□□□□□ -0.87
PDGFC-205ENST00000506880 RDM1Q8NG50 284 aa9.64□□□□□ -0.87
PDGFC-205ENST00000506880 ABHD8Q96I13 439 aa9.64□□□□□ -0.87
PDGFC-205ENST00000506880 FAM20AQ96MK3 541 aa9.64□□□□□ -0.87
PDGFC-205ENST00000506880 MBOAT7Q96N66 472 aa9.64□□□□□ -0.87
PDGFC-205ENST00000506880 TAAR1Q96RJ0 339 aa9.64□□□□□ -0.87
PDGFC-205ENST00000506880 RNF208Q9H0X6 261 aa9.64□□□□□ -0.87
PDGFC-205ENST00000506880 JADE2Q9NQC1 790 aa9.64□□□□□ -0.87
PDGFC-205ENST00000506880 TBC1D22BQ9NU19 505 aa9.64□□□□□ -0.87
PDGFC-205ENST00000506880 VPS54Q9P1Q0 977 aa9.64□□□□□ -0.87
PDGFC-205ENST00000506880 UBIAD1Q9Y5Z9 338 aa9.64□□□□□ -0.87
PDGFC-205ENST00000506880 ASTN1O14525 1302 aa9.63□□□□□ -0.87
PDGFC-205ENST00000506880 SCN10AQ9Y5Y9 1956 aa9.63□□□□□ -0.87
PDGFC-205ENST00000506880 LOXHD1Q8IVV2 1947 aa9.63□□□□□ -0.87
PDGFC-205ENST00000506880 SPATA31C2B4DYI2 1134 aa9.63□□□□□ -0.87
PDGFC-205ENST00000506880 GH1P01241 217 aa9.63□□□□□ -0.87
PDGFC-205ENST00000506880 HSP90AA1P07900 732 aaKnown RBP9.63□□□□□ -0.87
PDGFC-205ENST00000506880 ELNP15502 786 aa9.63□□□□□ -0.87
PDGFC-205ENST00000506880 SLC26A2P50443 739 aa9.63□□□□□ -0.87
PDGFC-205ENST00000506880 TNFAIP2Q03169 654 aa9.63□□□□□ -0.87
PDGFC-205ENST00000506880 ST3GAL1Q11201 340 aa9.63□□□□□ -0.87
PDGFC-205ENST00000506880 NPY5RQ15761 445 aa9.63□□□□□ -0.87
PDGFC-205ENST00000506880 CCDC144BQ3MJ40 725 aa9.63□□□□□ -0.87
PDGFC-205ENST00000506880 Q4G0T1 1027 aa9.63□□□□□ -0.87
PDGFC-205ENST00000506880 RILPL1Q5EBL4 403 aa9.63□□□□□ -0.87
PDGFC-205ENST00000506880 KRT40Q6A162 431 aa9.63□□□□□ -0.87
PDGFC-205ENST00000506880 TAPT1Q6NXT6 567 aa9.63□□□□□ -0.87
PDGFC-205ENST00000506880 USP17L6PQ6QN14 398 aa9.63□□□□□ -0.87
PDGFC-205ENST00000506880 METTL7BQ6UX53 244 aa9.63□□□□□ -0.87
PDGFC-205ENST00000506880 NEK8Q86SG6 692 aa9.63□□□□□ -0.87
PDGFC-205ENST00000506880 RAB11FIP4Q86YS3 637 aa9.63□□□□□ -0.87
PDGFC-205ENST00000506880 SLFN12Q8IYM2 578 aa9.63□□□□□ -0.87
PDGFC-205ENST00000506880 RIT2Q99578 217 aa9.63□□□□□ -0.87
PDGFC-205ENST00000506880 MXRA8Q9BRK3 442 aa9.63□□□□□ -0.87
PDGFC-205ENST00000506880 WDR11Q9BZH6 1224 aa9.63□□□□□ -0.87
PDGFC-205ENST00000506880 AP5M1Q9H0R1 490 aa9.63□□□□□ -0.87
PDGFC-205ENST00000506880 ZSCAN16Q9H4T2 348 aaPredicted RBP9.63□□□□□ -0.87
PDGFC-205ENST00000506880 POLR3EQ9NVU0 708 aa9.63□□□□□ -0.87
PDGFC-205ENST00000506880 FLRT1Q9NZU1 646 aa9.63□□□□□ -0.87
PDGFC-205ENST00000506880 COL20A1Q9P218 1284 aa9.63□□□□□ -0.87
PDGFC-205ENST00000506880 TCEAL9Q9UHQ7 104 aa9.63□□□□□ -0.87
Retrieved 100 of 20,778 RNA–protein pairs in 16.6 ms