RNA–Protein interactions for RNA: ENST00000494728.5

VTI1A-208, Transcript of vesicle transport through interaction with t-SNAREs 1A, human

TSL 2

Gene VTI1A, Length 463 nt, Biotype processed transcript, Subcellular localisation Cytoplasm, Cytosol, Nucleus .

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RNA		Protein				Prediction (catRAPID)		Interaction (ENCODE eCLIP)
Transcript Symbol	Ensembl Transcript ID	Gene	UniProt Accession	Length	Protein Status	Prediction Score	Prediction z-Score	p-Value	Fold Change
VTI1A-208	ENST00000494728	KAT2B	Q92831	832 aa		13.55	□□□□□ -0.24
VTI1A-208	ENST00000494728	MAP4K1	Q92918	833 aa		13.55	□□□□□ -0.24
VTI1A-208	ENST00000494728	ZFP91	Q96JP5	570 aa	Predicted RBP	13.55	□□□□□ -0.24
VTI1A-208	ENST00000494728	CTAGE1	Q96RT6	745 aa		13.55	□□□□□ -0.24
VTI1A-208	ENST00000494728	MYL10	Q9BUA6	226 aa		13.55	□□□□□ -0.24
VTI1A-208	ENST00000494728	AMN	Q9BXJ7	453 aa		13.55	□□□□□ -0.24
VTI1A-208	ENST00000494728	LSG1	Q9H089	658 aa	Known RBP	13.55	□□□□□ -0.24
VTI1A-208	ENST00000494728	RIOX1	Q9H6W3	641 aa		13.55	□□□□□ -0.24
VTI1A-208	ENST00000494728	TRDN	Q13061	729 aa		13.54	□□□□□ -0.24
VTI1A-208	ENST00000494728	WTAP	Q15007	396 aa		13.54	□□□□□ -0.24
VTI1A-208	ENST00000494728	ARHGEF16	Q5VV41	709 aa		13.54	□□□□□ -0.24
VTI1A-208	ENST00000494728	RALYL	Q86SE5	291 aa	Known RBP	13.54	□□□□□ -0.24
VTI1A-208	ENST00000494728	MCF2L2	Q86YR7	1114 aa		13.54	□□□□□ -0.24
VTI1A-208	ENST00000494728	USP38	Q8NB14	1042 aa		13.54	□□□□□ -0.24
VTI1A-208	ENST00000494728	MAFA	Q8NHW3	353 aa	Predicted RBP	13.54	□□□□□ -0.24
VTI1A-208	ENST00000494728	NCOA7	Q8NI08	942 aa		13.54	□□□□□ -0.24
VTI1A-208	ENST00000494728	IGDCC4	Q8TDY8	1250 aa		13.54	□□□□□ -0.24
VTI1A-208	ENST00000494728	HERVK_113	Q902F9	699 aa		13.54	□□□□□ -0.24
VTI1A-208	ENST00000494728	GPKOW	Q92917	476 aa	Predicted RBP eCLIP	13.54	□□□□□ -0.24
VTI1A-208	ENST00000494728	TIFA	Q96CG3	184 aa		13.54	□□□□□ -0.24
VTI1A-208	ENST00000494728	MPHOSPH6	Q99547	160 aa	Known RBP	13.54	□□□□□ -0.24
VTI1A-208	ENST00000494728	PDCD2L	Q9BRP1	358 aa		13.54	□□□□□ -0.24
VTI1A-208	ENST00000494728	LY9	Q9HBG7	655 aa		13.54	□□□□□ -0.24
VTI1A-208	ENST00000494728	YBX2	Q9Y2T7	364 aa	Known RBP	13.54	□□□□□ -0.24
VTI1A-208	ENST00000494728	SI	P14410	1827 aa		13.54	□□□□□ -0.24
VTI1A-208	ENST00000494728	MICAL3	Q7RTP6	2002 aa		13.53	□□□□□ -0.24
VTI1A-208	ENST00000494728	TMEM265	A0A087WTH1	108 aa		13.53	□□□□□ -0.24
VTI1A-208	ENST00000494728	DLL1	O00548	723 aa		13.53	□□□□□ -0.24
VTI1A-208	ENST00000494728	SORBS3	O60504	671 aa		13.53	□□□□□ -0.24
VTI1A-208	ENST00000494728	GH1	P01241	217 aa		13.53	□□□□□ -0.24
VTI1A-208	ENST00000494728	NR3C2	P08235	984 aa		13.53	□□□□□ -0.24
VTI1A-208	ENST00000494728	ZNF286B	P0CG31	522 aa		13.53	□□□□□ -0.24
VTI1A-208	ENST00000494728	FOSL2	P15408	326 aa		13.53	□□□□□ -0.24
VTI1A-208	ENST00000494728	STXBP2	Q15833	593 aa		13.53	□□□□□ -0.24
VTI1A-208	ENST00000494728	TMEM67	Q5HYA8	995 aa		13.53	□□□□□ -0.24
VTI1A-208	ENST00000494728	PHF6	Q8IWS0	365 aa	Known RBP eCLIP	13.53	□□□□□ -0.24
VTI1A-208	ENST00000494728	PIBF1	Q8WXW3	757 aa		13.53	□□□□□ -0.24
VTI1A-208	ENST00000494728	IWS1	Q96ST2	819 aa		13.53	□□□□□ -0.24
VTI1A-208	ENST00000494728	MAF1	Q9H063	256 aa		13.53	□□□□□ -0.24
VTI1A-208	ENST00000494728	ZNF576	Q9H609	170 aa		13.53	□□□□□ -0.24
VTI1A-208	ENST00000494728	DDX41	Q9UJV9	622 aa	Known RBP	13.53	□□□□□ -0.24
VTI1A-208	ENST00000494728	PCDHA1	Q9Y5I3	950 aa		13.53	□□□□□ -0.24
VTI1A-208	ENST00000494728	PRRC2B	Q5JSZ5	2229 aa	Known RBP	13.53	□□□□□ -0.24
VTI1A-208	ENST00000494728	BRWD1	Q9NSI6	2320 aa		13.52	□□□□□ -0.24
VTI1A-208	ENST00000494728	RABGGTB	P53611	331 aa		13.52	□□□□□ -0.25
VTI1A-208	ENST00000494728	CHMP4BP1	P59074	171 aa		13.52	□□□□□ -0.25
VTI1A-208	ENST00000494728	SP2	Q02086	613 aa		13.52	□□□□□ -0.25
VTI1A-208	ENST00000494728	PGM5	Q15124	567 aa		13.52	□□□□□ -0.25
VTI1A-208	ENST00000494728	GDF6	Q6KF10	455 aa	Predicted RBP	13.52	□□□□□ -0.25
VTI1A-208	ENST00000494728	NFRKB	Q6P4R8	1299 aa		13.52	□□□□□ -0.25
VTI1A-208	ENST00000494728	RAB11FIP4	Q86YS3	637 aa		13.52	□□□□□ -0.25
VTI1A-208	ENST00000494728	ZNF654	Q8IZM8	581 aa		13.52	□□□□□ -0.25
VTI1A-208	ENST00000494728	ESYT1	Q9BSJ8	1104 aa		13.52	□□□□□ -0.25
VTI1A-208	ENST00000494728	SEZ6L	Q9BYH1	1024 aa		13.52	□□□□□ -0.25
VTI1A-208	ENST00000494728	BCAS3	Q9H6U6	928 aa		13.52	□□□□□ -0.25
VTI1A-208	ENST00000494728	FRMPD4	Q14CM0	1322 aa		13.51	□□□□□ -0.25
VTI1A-208	ENST00000494728	SH2B2	O14492	632 aa	Predicted RBP	13.51	□□□□□ -0.25
VTI1A-208	ENST00000494728	SLC27A2	O14975	620 aa		13.51	□□□□□ -0.25
VTI1A-208	ENST00000494728	PLEKHA8P1	O95397	391 aa		13.51	□□□□□ -0.25
VTI1A-208	ENST00000494728	FGB	P02675	491 aa		13.51	□□□□□ -0.25
VTI1A-208	ENST00000494728	MYCL	P12524	364 aa	Predicted RBP	13.51	□□□□□ -0.25
VTI1A-208	ENST00000494728	MYOG	P15173	224 aa		13.51	□□□□□ -0.25
VTI1A-208	ENST00000494728	RXRA	P19793	462 aa		13.51	□□□□□ -0.25
VTI1A-208	ENST00000494728	UBA1	P22314	1058 aa	Known RBP	13.51	□□□□□ -0.25
VTI1A-208	ENST00000494728	HIC1	Q14526	733 aa		13.51	□□□□□ -0.25
VTI1A-208	ENST00000494728	DEFB128	Q7Z7B8	93 aa		13.51	□□□□□ -0.25
VTI1A-208	ENST00000494728	DHX38	Q92620	1227 aa	Known RBP	13.51	□□□□□ -0.25
VTI1A-208	ENST00000494728	WNT8B	Q93098	351 aa		13.51	□□□□□ -0.25
VTI1A-208	ENST00000494728	EMID1	Q96A84	441 aa	Predicted RBP	13.51	□□□□□ -0.25
VTI1A-208	ENST00000494728	MRVI1	Q9Y6F6	885 aa		13.51	□□□□□ -0.25
VTI1A-208	ENST00000494728	PNMA6F	A0A0J9YX94	578 aa		13.5	□□□□□ -0.25
VTI1A-208	ENST00000494728	ERICH2	A1L162	156 aa		13.5	□□□□□ -0.25
VTI1A-208	ENST00000494728		B4DLN1	442 aa		13.5	□□□□□ -0.25
VTI1A-208	ENST00000494728	PRC1	O43663	620 aa		13.5	□□□□□ -0.25
VTI1A-208	ENST00000494728	EIF3J	O75822	258 aa	Known RBP	13.5	□□□□□ -0.25
VTI1A-208	ENST00000494728	F2	P00734	622 aa		13.5	□□□□□ -0.25
VTI1A-208	ENST00000494728	MRPL12	P52815	198 aa	Known RBP	13.5	□□□□□ -0.25
VTI1A-208	ENST00000494728	ADGRE1	Q14246	886 aa		13.5	□□□□□ -0.25
VTI1A-208	ENST00000494728	GPNMB	Q14956	572 aa		13.5	□□□□□ -0.25
VTI1A-208	ENST00000494728	BRDT	Q58F21	947 aa	Predicted RBP	13.5	□□□□□ -0.25
VTI1A-208	ENST00000494728	VSIG10L	Q86VR7	867 aa		13.5	□□□□□ -0.25
VTI1A-208	ENST00000494728	FCHSD1	Q86WN1	690 aa		13.5	□□□□□ -0.25
VTI1A-208	ENST00000494728	CMTR1	Q8N1G2	835 aa	Known RBP	13.5	□□□□□ -0.25
VTI1A-208	ENST00000494728	COL25A1	Q9BXS0	654 aa	Predicted RBP	13.5	□□□□□ -0.25
VTI1A-208	ENST00000494728	LRRC2	Q9BYS8	371 aa		13.5	□□□□□ -0.25
VTI1A-208	ENST00000494728	NKX2-4	Q9H2Z4	354 aa		13.5	□□□□□ -0.25
VTI1A-208	ENST00000494728	PRDM12	Q9H4Q4	367 aa		13.5	□□□□□ -0.25
VTI1A-208	ENST00000494728	TELO2	Q9Y4R8	837 aa		13.5	□□□□□ -0.25
VTI1A-208	ENST00000494728	KAT6A	Q92794	2004 aa		13.49	□□□□□ -0.25
VTI1A-208	ENST00000494728	PITPNM1	O00562	1244 aa		13.49	□□□□□ -0.25
VTI1A-208	ENST00000494728	KPNA6	O60684	536 aa		13.49	□□□□□ -0.25
VTI1A-208	ENST00000494728	ARHGEF15	O94989	841 aa		13.49	□□□□□ -0.25
VTI1A-208	ENST00000494728	SUPT20HL2	P0C7V6	817 aa		13.49	□□□□□ -0.25
VTI1A-208	ENST00000494728	HOXD8	P13378	290 aa	Predicted RBP	13.49	□□□□□ -0.25
VTI1A-208	ENST00000494728	MRPS9	P82933	396 aa	Known RBP	13.49	□□□□□ -0.25
VTI1A-208	ENST00000494728	PTPN11	Q06124	597 aa	Predicted RBP	13.49	□□□□□ -0.25
VTI1A-208	ENST00000494728	SEMA3F	Q13275	785 aa		13.49	□□□□□ -0.25
VTI1A-208	ENST00000494728	SART3	Q15020	963 aa	Known RBP	13.49	□□□□□ -0.25
VTI1A-208	ENST00000494728	NECTIN1	Q15223	517 aa		13.49	□□□□□ -0.25
VTI1A-208	ENST00000494728	PTGIS	Q16647	500 aa		13.49	□□□□□ -0.25

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